Wall clock time and date at job start Tue Mar 31 2020 05:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 119.99958 * 2 1 4 4 H 1.48502 * 109.47109 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.46920 * 299.99558 * 3 2 1 6 6 H 1.48495 * 109.47218 * 59.99689 * 3 2 1 7 7 C 1.38956 * 120.00196 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99545 * 291.31801 * 7 2 1 9 9 N 1.37092 * 119.99826 * 111.31260 * 7 2 1 10 10 C 1.46504 * 119.99777 * 152.48212 * 9 7 2 11 11 C 1.52996 * 109.47317 * 274.48595 * 10 9 7 12 12 C 1.50702 * 109.47229 * 179.97438 * 11 10 9 13 13 O 1.20829 * 119.99820 * 0.02562 * 12 11 10 14 14 O 1.34222 * 120.00515 * 179.97438 * 12 11 10 15 15 C 1.34773 * 120.00562 * 332.48680 * 9 7 2 16 16 O 1.21301 * 119.99912 * 353.70054 * 15 9 7 17 17 C 1.50699 * 120.00194 * 173.69591 * 15 9 7 18 18 C 1.50478 * 109.62521 * 83.50564 * 17 15 9 19 19 C 1.54064 * 112.49939 * 213.85634 * 18 17 15 20 20 C 1.54069 * 112.81775 * 318.28390 * 19 18 17 21 21 C 1.50474 * 112.49413 * 318.28014 * 20 19 18 22 22 C 1.54248 * 108.51281 * 94.15819 * 21 20 19 23 23 C 1.45541 * 112.40833 * 280.00194 * 22 21 20 24 24 H 0.97003 * 120.00063 * 4.94608 * 1 2 3 25 25 H 1.09005 * 109.46784 * 34.48819 * 10 9 7 26 26 H 1.08996 * 109.47026 * 154.47874 * 10 9 7 27 27 H 1.08996 * 109.46863 * 299.99583 * 11 10 9 28 28 H 1.08998 * 109.47409 * 60.00144 * 11 10 9 29 29 H 0.96703 * 117.00637 * 180.02562 * 14 12 11 30 30 H 1.08995 * 109.78739 * 323.02442 * 17 15 9 31 31 H 1.09000 * 108.87912 * 334.63503 * 18 17 15 32 32 H 1.09002 * 108.87623 * 93.17970 * 18 17 15 33 33 H 1.09004 * 108.81680 * 197.42431 * 19 18 17 34 34 H 1.08999 * 108.81653 * 79.14374 * 19 18 17 35 35 H 1.08998 * 108.87787 * 197.51114 * 20 19 18 36 36 H 1.08994 * 108.87875 * 79.05999 * 20 19 18 37 37 H 1.08994 * 109.63270 * 213.86079 * 21 20 19 38 38 H 1.08997 * 109.63575 * 334.25387 * 21 20 19 39 39 H 1.09001 * 108.89076 * 40.75232 * 22 21 20 40 40 H 1.08995 * 108.89262 * 159.24327 * 22 21 20 41 41 H 1.09000 * 108.89346 * 182.68787 * 23 22 21 42 42 H 1.09000 * 108.89636 * 301.27897 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 1.9844 -1.8406 0.8722 9 7 2.7254 -1.5817 -1.1054 10 6 3.8913 -2.4566 -0.9588 11 6 5.1267 -1.6113 -0.6426 12 6 6.3259 -2.5113 -0.4911 13 8 6.2049 -3.7063 -0.6231 14 8 7.5286 -1.9855 -0.2107 15 6 2.3573 -1.1487 -2.3274 16 8 1.3290 -0.5199 -2.4638 17 6 3.2231 -1.4458 -3.5245 18 6 2.9117 -2.8232 -4.0443 19 6 4.1528 -3.5299 -4.6220 20 6 5.0362 -2.5911 -5.4658 21 6 4.2282 -1.6849 -6.3547 22 6 4.0071 -0.3473 -5.6191 23 6 2.9315 -0.4229 -4.6416 24 1 -0.4850 0.8369 -0.0724 25 1 3.7162 -3.1622 -0.1466 26 1 4.0536 -3.0043 -1.8871 27 1 5.3018 -0.9058 -1.4548 28 1 4.9644 -1.0637 0.2858 29 1 8.2681 -2.6026 -0.1233 30 1 4.2745 -1.3900 -3.2424 31 1 2.5105 -3.4254 -3.2291 32 1 2.1573 -2.7425 -4.8269 33 1 3.8251 -4.3605 -5.2474 34 1 4.7471 -3.9258 -3.7986 35 1 5.6992 -3.1940 -6.0863 36 1 5.6416 -1.9802 -4.7963 37 1 4.7688 -1.5065 -7.2842 38 1 3.2666 -2.1489 -6.5738 39 1 4.9290 -0.0686 -5.1086 40 1 3.7649 0.4226 -6.3517 41 1 2.7931 0.5605 -4.1923 42 1 2.0116 -0.7107 -5.1505 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071006.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:04 Heat of formation + Delta-G solvation = -127.281608 kcal Electronic energy + Delta-G solvation = -24304.919137 eV Core-core repulsion = 20864.013920 eV Total energy + Delta-G solvation = -3440.905216 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.14259 -39.45139 -37.34057 -36.03207 -34.59818 -32.82115 -32.14945 -31.53629 -30.30721 -25.87571 -24.82085 -24.27844 -23.36439 -21.05576 -20.38530 -19.56257 -18.57670 -17.94449 -17.07074 -16.41290 -15.86318 -15.38633 -14.90389 -14.86107 -14.50791 -14.16659 -13.87803 -13.61245 -13.24845 -12.91393 -12.85340 -12.58471 -12.29036 -12.15033 -11.90614 -11.88483 -11.39519 -11.38978 -10.92333 -10.68187 -10.65719 -10.55110 -10.50059 -10.33031 -10.32536 -10.21852 -10.00760 -9.93612 -9.80775 -8.69095 -8.06091 -7.50556 -6.69851 -3.47415 2.40736 3.18832 3.27875 3.47251 3.48198 4.05875 4.37028 4.54483 4.85605 4.89157 5.04935 5.12023 5.29731 5.40049 5.41389 5.44938 5.50895 5.61878 5.63727 5.74109 5.81763 5.93522 5.97555 6.03326 6.18240 6.23772 6.29918 6.32025 6.39035 6.43595 6.50654 6.53950 6.58119 6.64200 6.69194 6.77558 6.84556 7.53974 8.04862 8.13456 8.87699 9.23949 9.56054 10.21633 10.37531 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.011842 B = 0.008838 C = 0.006101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.798413 B = 3167.533794 C = 4588.561412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.717 5.717 2 C 0.193 3.807 3 Si 0.784 3.216 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.282 1.282 7 C -0.474 4.474 8 H 0.091 0.909 9 N -0.430 5.430 10 C 0.117 3.883 11 C -0.134 4.134 12 C 0.483 3.517 13 O -0.520 6.520 14 O -0.521 6.521 15 C 0.438 3.562 16 O -0.553 6.553 17 C -0.095 4.095 18 C -0.106 4.106 19 C -0.117 4.117 20 C -0.117 4.117 21 C -0.117 4.117 22 C -0.114 4.114 23 C -0.099 4.099 24 H 0.276 0.724 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.116 0.884 29 H 0.403 0.597 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.949 -3.420 -7.429 14.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.034 4.034 3 Si 0.604 3.396 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.208 1.208 7 C -0.591 4.591 8 H 0.109 0.891 9 N -0.150 5.150 10 C -0.008 4.008 11 C -0.173 4.173 12 C 0.325 3.675 13 O -0.408 6.408 14 O -0.333 6.333 15 C 0.229 3.771 16 O -0.435 6.435 17 C -0.117 4.117 18 C -0.144 4.144 19 C -0.154 4.154 20 C -0.155 4.155 21 C -0.155 4.155 22 C -0.152 4.152 23 C -0.137 4.137 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.117 0.883 28 H 0.134 0.866 29 H 0.260 0.740 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.772 -3.163 -7.475 13.488 hybrid contribution 1.216 0.667 0.216 1.404 sum 11.988 -2.496 -7.259 14.236 Atomic orbital electron populations 1.70596 1.09434 1.29467 1.24337 1.24895 0.92612 0.98446 0.87419 0.88215 0.85064 0.88330 0.78003 1.18657 1.20159 1.20833 1.17963 1.37367 1.06828 0.96972 0.89111 1.43425 1.22241 1.43965 1.05399 1.21451 0.84359 0.92796 1.02215 1.22087 0.89808 0.99110 1.06295 1.23875 0.83912 0.88345 0.71324 1.90690 1.85628 1.17391 1.47111 1.84609 1.19529 1.46037 1.83098 1.19978 0.87713 0.86200 0.83245 1.90583 1.25521 1.43392 1.83989 1.20987 0.99663 0.95930 0.95165 1.21288 0.97459 0.95169 1.00497 1.21951 0.96636 0.97836 0.99020 1.21332 0.98091 0.97976 0.98078 1.21346 1.00580 0.95876 0.97663 1.20524 0.99499 0.97032 0.98139 1.20237 0.98413 0.99670 0.95333 0.91366 0.90644 0.90761 0.88324 0.86641 0.73954 0.90790 0.91636 0.91840 0.92445 0.92167 0.92824 0.92304 0.92554 0.91530 0.92567 0.92583 0.91839 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -20.50 13.71 55.50 0.76 -19.74 16 2 C 0.19 5.37 3.17 -17.47 -0.06 5.31 16 3 Si 0.78 19.74 28.74 -169.99 -4.89 14.85 16 4 H -0.26 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.47 -12.85 9.33 -14.93 -0.14 -12.99 16 8 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 9 N -0.43 -10.21 2.55 -114.81 -0.29 -10.51 16 10 C 0.12 2.23 4.22 -4.04 -0.02 2.21 16 11 C -0.13 -2.23 6.00 -27.88 -0.17 -2.39 16 12 C 0.48 7.15 8.33 36.01 0.30 7.45 16 13 O -0.52 -8.78 16.74 -18.75 -0.31 -9.09 16 14 O -0.52 -6.16 13.42 -39.24 -0.53 -6.69 16 15 C 0.44 10.45 5.88 -10.99 -0.06 10.39 16 16 O -0.55 -15.56 13.71 5.54 0.08 -15.48 16 17 C -0.10 -1.74 1.35 -92.38 -0.12 -1.86 16 18 C -0.11 -1.72 3.96 -27.44 -0.11 -1.83 16 19 C -0.12 -1.53 5.78 -25.62 -0.15 -1.68 16 20 C -0.12 -1.39 5.31 -27.43 -0.15 -1.54 16 21 C -0.12 -1.38 5.60 -27.34 -0.15 -1.54 16 22 C -0.11 -1.54 5.26 -29.59 -0.16 -1.69 16 23 C -0.10 -1.69 4.17 -29.60 -0.12 -1.81 16 24 H 0.28 7.32 8.32 -40.82 -0.34 6.98 16 25 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 26 H 0.07 1.31 4.68 -51.93 -0.24 1.07 16 27 H 0.10 1.57 7.21 -51.93 -0.37 1.20 16 28 H 0.12 2.01 8.14 -51.93 -0.42 1.59 16 29 H 0.40 2.83 9.10 45.56 0.41 3.25 16 30 H 0.07 1.25 5.09 -51.93 -0.26 0.98 16 31 H 0.06 1.17 7.08 -51.93 -0.37 0.80 16 32 H 0.06 1.02 6.63 -51.93 -0.34 0.67 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.81 7.60 -51.93 -0.39 0.41 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.72 6.63 -51.93 -0.34 0.37 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.81 6.99 -51.93 -0.36 0.45 16 39 H 0.06 0.73 7.47 -51.93 -0.39 0.34 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 1.23 7.76 -51.93 -0.40 0.83 16 42 H 0.06 1.12 7.47 -51.93 -0.39 0.73 16 LS Contribution 327.38 15.07 4.93 4.93 Total: -1.00 -32.51 327.38 -6.90 -39.41 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -5.55 Total: 4.29 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -1.10 Total: -1.97 kcal Atomic # 7 Polarization: -30.71 SS G_CDS: 0.47 Total: -30.24 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -0.76 Total: -31.27 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.89 Total: 14.85 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.51 -6.90 -39.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071006.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.874 kcal (2) G-P(sol) polarization free energy of solvation -32.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds