Wall clock time and date at job start Tue Mar 31 2020 05:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 120.00174 * 2 1 4 4 H 1.48500 * 109.47289 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46797 * 300.00159 * 3 2 1 6 6 H 1.48506 * 109.46721 * 59.99572 * 3 2 1 7 7 C 1.38815 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00189 * 179.06864 * 7 2 1 9 9 N 1.36935 * 120.00247 * 359.06715 * 7 2 1 10 10 C 1.46502 * 119.99814 * 346.97462 * 9 7 2 11 11 C 1.50705 * 109.47394 * 83.19565 * 10 9 7 12 12 O 1.20826 * 119.99320 * 6.60233 * 11 10 9 13 13 O 1.34223 * 120.00076 * 186.60095 * 11 10 9 14 14 C 1.46494 * 120.00492 * 166.97196 * 9 7 2 15 15 C 1.52994 * 109.47013 * 90.29003 * 14 9 7 16 16 H 1.08997 * 109.47941 * 303.78411 * 15 14 9 17 17 C 1.53045 * 109.47711 * 183.77433 * 15 14 9 18 18 C 1.53152 * 109.41452 * 180.68773 * 17 15 14 19 19 C 1.53315 * 108.97061 * 58.62452 * 18 17 15 20 20 C 1.52820 * 108.91207 * 305.10703 * 19 18 17 21 21 C 1.53392 * 113.48839 * 185.11846 * 20 19 18 22 22 C 1.53852 * 87.07470 * 139.67762 * 21 20 19 23 23 C 1.53425 * 113.42182 * 282.90837 * 20 19 18 24 24 O 1.42581 * 112.93907 * 53.93842 * 20 19 18 25 25 H 0.96993 * 120.00183 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47367 * 203.19812 * 10 9 7 27 27 H 1.09001 * 109.47340 * 323.19725 * 10 9 7 28 28 H 0.96705 * 116.99809 * 179.97438 * 13 11 10 29 29 H 1.09004 * 109.46718 * 330.29242 * 14 9 7 30 30 H 1.08995 * 109.47220 * 210.29536 * 14 9 7 31 31 H 1.09003 * 109.48240 * 60.70402 * 17 15 14 32 32 H 1.09003 * 109.48748 * 300.67807 * 17 15 14 33 33 H 1.09007 * 109.55513 * 298.78139 * 18 17 15 34 34 H 1.08996 * 109.64479 * 178.52312 * 18 17 15 35 35 H 1.09000 * 109.56634 * 185.27777 * 19 18 17 36 36 H 1.09000 * 109.56207 * 64.93063 * 19 18 17 37 37 H 1.08996 * 113.63364 * 254.24240 * 21 20 19 38 38 H 1.08996 * 113.63334 * 25.11692 * 21 20 19 39 39 H 1.09003 * 113.60194 * 89.44633 * 22 21 20 40 40 H 1.09002 * 113.60531 * 220.30930 * 22 21 20 41 41 H 1.08999 * 113.63383 * 334.73359 * 23 20 19 42 42 H 1.09001 * 113.63012 * 105.61019 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 -0.0147 9 7 1.3258 -2.3880 0.0204 10 6 -0.1068 -2.4018 0.3267 11 6 -0.8907 -2.0920 -0.9226 12 8 -0.3224 -1.9991 -1.9848 13 8 -2.2200 -1.9192 -0.8552 14 6 2.0259 -3.6428 -0.2647 15 6 2.5648 -4.2338 1.0395 16 1 3.2039 -3.5020 1.5334 17 6 3.3762 -5.4944 0.7316 18 6 3.9006 -6.0944 2.0395 19 6 2.7113 -6.4193 2.9509 20 6 1.8693 -5.1574 3.1352 21 6 0.7165 -5.3318 4.1320 22 6 1.0509 -3.9204 4.6449 23 6 2.4809 -4.1550 4.1226 24 8 1.4715 -4.5692 1.8988 25 1 -0.4850 0.8400 -0.0004 26 1 -0.3895 -3.3868 0.6981 27 1 -0.3231 -1.6511 1.0868 28 1 -2.6796 -1.7218 -1.6828 29 1 2.8547 -3.4497 -0.9459 30 1 1.3342 -4.3484 -0.7249 31 1 4.2167 -5.2373 0.0869 32 1 2.7404 -6.2220 0.2271 33 1 4.5539 -5.3758 2.5345 34 1 4.4571 -7.0071 1.8268 35 1 3.0763 -6.7593 3.9200 36 1 2.1035 -7.2000 2.4934 37 1 -0.2629 -5.4041 3.6591 38 1 0.8903 -6.1166 4.8681 39 1 0.5188 -3.1275 4.1191 40 1 0.9913 -3.8244 5.7290 41 1 3.1430 -4.6136 4.8571 42 1 2.9217 -3.2817 3.6419 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071402.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:22 Heat of formation + Delta-G solvation = -94.478755 kcal Electronic energy + Delta-G solvation = -24330.504193 eV Core-core repulsion = 20891.021415 eV Total energy + Delta-G solvation = -3439.482778 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.15411 -38.43656 -36.57350 -35.14295 -34.08552 -33.34823 -31.58900 -29.68395 -27.33712 -26.05224 -25.55908 -23.80095 -22.69539 -21.16666 -20.36616 -19.78285 -18.69577 -16.84428 -16.42392 -15.84340 -15.58907 -15.23626 -14.97335 -14.76668 -13.98052 -13.91195 -13.82229 -13.52043 -13.22402 -12.99416 -12.75470 -12.29010 -12.09514 -11.56713 -11.39044 -11.33004 -11.00301 -10.95858 -10.87944 -10.74117 -10.59969 -10.53673 -10.32899 -10.17691 -10.03391 -9.95383 -9.79994 -9.53541 -8.99770 -8.76486 -8.51258 -7.00648 -5.82299 -3.23008 3.36691 3.42306 3.45012 4.02539 4.17803 4.39588 4.73434 4.78446 4.82755 4.98601 5.06800 5.08465 5.23991 5.34905 5.42376 5.49562 5.63496 5.76447 5.79279 5.81451 5.94705 5.95240 6.07771 6.11726 6.15749 6.20835 6.24811 6.30183 6.40484 6.46824 6.61470 6.68127 6.76809 6.82507 7.21641 7.45232 7.65743 7.89968 8.13250 8.27012 9.11520 9.67319 9.80731 10.18476 11.23783 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.016511 B = 0.006249 C = 0.005864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.392687 B = 4479.554084 C = 4773.386665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.921 3.079 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.230 4.230 8 H 0.079 0.921 9 N -0.569 5.569 10 C 0.203 3.797 11 C 0.490 3.510 12 O -0.548 6.548 13 O -0.541 6.541 14 C 0.158 3.842 15 C 0.073 3.927 16 H 0.059 0.941 17 C -0.150 4.150 18 C -0.118 4.118 19 C -0.132 4.132 20 C 0.095 3.905 21 C -0.127 4.127 22 C -0.132 4.132 23 C -0.165 4.165 24 O -0.337 6.337 25 H 0.257 0.743 26 H 0.051 0.949 27 H 0.119 0.881 28 H 0.374 0.626 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.257 -11.541 7.566 14.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.201 4.201 3 Si 0.751 3.249 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.358 4.358 8 H 0.097 0.903 9 N -0.288 5.288 10 C 0.074 3.926 11 C 0.332 3.668 12 O -0.436 6.436 13 O -0.350 6.350 14 C 0.030 3.970 15 C 0.013 3.987 16 H 0.077 0.923 17 C -0.189 4.189 18 C -0.156 4.156 19 C -0.170 4.170 20 C 0.055 3.945 21 C -0.164 4.164 22 C -0.170 4.170 23 C -0.202 4.202 24 O -0.256 6.256 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.136 0.864 28 H 0.229 0.771 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.379 -11.400 7.596 14.109 hybrid contribution 0.447 1.166 -0.710 1.436 sum 3.827 -10.234 6.886 12.915 Atomic orbital electron populations 1.69445 1.05102 1.25264 1.57240 1.24816 0.95653 0.98292 1.01368 0.85910 0.78614 0.83173 0.77166 1.20467 1.21773 1.21694 1.19442 0.90948 0.83322 1.42130 0.90325 1.43772 1.03666 1.02110 1.79233 1.20343 0.81327 0.99467 0.91434 1.25058 0.78316 0.70774 0.92699 1.90461 1.69908 1.50627 1.32653 1.84629 1.24974 1.84479 1.40887 1.20843 0.96540 0.88031 0.91545 1.23080 0.88518 0.93647 0.93490 0.92304 1.22171 1.00362 0.98943 0.97391 1.21555 0.97364 1.00458 0.96213 1.22001 0.97171 0.97979 0.99823 1.22085 0.95137 0.91834 0.85492 1.22914 0.98857 0.97672 0.97006 1.22790 0.96803 0.97499 0.99871 1.23473 0.97147 1.00552 0.99073 1.87983 1.31320 1.79988 1.26328 0.93128 0.93105 0.86351 0.77129 0.91679 0.93504 0.91271 0.91503 0.92045 0.92254 0.91525 0.91515 0.90640 0.89734 0.89180 0.92115 0.90451 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.14 7.92 55.49 0.44 -25.70 16 2 C -0.01 -0.19 5.36 -17.43 -0.09 -0.28 16 3 Si 0.92 22.15 29.55 -169.99 -5.02 17.13 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.23 -6.15 9.70 -15.06 -0.15 -6.30 16 8 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 9 N -0.57 -14.02 2.02 -174.61 -0.35 -14.38 16 10 C 0.20 5.00 5.34 -5.19 -0.03 4.98 16 11 C 0.49 12.62 5.82 36.01 0.21 12.83 16 12 O -0.55 -15.83 17.06 -18.75 -0.32 -16.15 16 13 O -0.54 -12.09 13.42 -39.24 -0.53 -12.61 16 14 C 0.16 3.24 5.33 -4.05 -0.02 3.22 16 15 C 0.07 1.26 2.78 -26.71 -0.07 1.19 16 16 H 0.06 1.11 7.21 -51.93 -0.37 0.73 16 17 C -0.15 -2.08 5.36 -26.63 -0.14 -2.22 16 18 C -0.12 -1.41 5.96 -26.49 -0.16 -1.57 16 19 C -0.13 -1.58 5.26 -26.66 -0.14 -1.72 16 20 C 0.10 1.35 1.03 -90.29 -0.09 1.26 16 21 C -0.13 -1.62 7.46 -26.08 -0.19 -1.81 16 22 C -0.13 -1.80 8.04 -25.75 -0.21 -2.00 16 23 C -0.16 -2.26 7.12 -25.97 -0.18 -2.45 16 24 O -0.34 -5.97 8.97 -35.23 -0.32 -6.29 16 25 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.05 1.16 7.22 -51.93 -0.38 0.78 16 27 H 0.12 3.17 6.32 -51.93 -0.33 2.84 16 28 H 0.37 6.82 9.10 45.56 0.41 7.24 16 29 H 0.07 1.31 8.04 -51.93 -0.42 0.89 16 30 H 0.05 0.96 8.07 -51.93 -0.42 0.54 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.68 8.04 -51.93 -0.42 0.26 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 39 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.90 8.02 -51.93 -0.42 0.49 16 42 H 0.07 1.19 7.26 -51.93 -0.38 0.82 16 LS Contribution 333.43 15.07 5.02 5.02 Total: -1.00 -31.61 333.43 -8.40 -40.02 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -6.06 Total: 7.84 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -1.27 Total: 5.12 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.09 Total: -40.08 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -1.16 Total: -35.05 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.61 -8.40 -40.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071402.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.460 kcal (2) G-P(sol) polarization free energy of solvation -31.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds