Wall clock time and date at job start Tue Mar 31 2020 05:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 120.00360 * 2 1 4 4 H 1.48499 * 109.47290 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46828 * 300.00321 * 3 2 1 6 6 H 1.48502 * 109.47008 * 60.00156 * 3 2 1 7 7 C 1.37886 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99681 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47443 * 299.99445 * 9 7 2 11 11 O 1.42901 * 109.47741 * 59.99642 * 9 7 2 12 12 C 1.52997 * 109.47054 * 179.97438 * 9 7 2 13 13 N 1.46899 * 109.47285 * 178.00988 * 12 9 7 14 14 C 1.48795 * 111.00125 * 294.27144 * 13 12 9 15 15 C 1.55586 * 103.69312 * 199.22736 * 14 13 12 16 16 H 1.09001 * 109.70622 * 147.48003 * 15 14 13 17 17 C 1.51568 * 107.51065 * 266.56493 * 15 14 13 18 18 C 1.52222 * 112.86386 * 150.52343 * 17 15 14 19 19 C 1.53447 * 108.05768 * 301.29378 * 18 17 15 20 20 C 1.50791 * 107.77678 * 67.92275 * 19 18 17 21 21 C 1.49425 * 114.38536 * 305.82975 * 20 19 18 22 22 C 1.50700 * 105.70891 * 149.40548 * 21 20 19 23 23 O 1.20826 * 120.00113 * 238.87362 * 22 21 20 24 24 O 1.34237 * 119.99702 * 58.88124 * 22 21 20 25 25 C 1.48735 * 110.99984 * 178.71035 * 13 12 9 26 26 H 0.97001 * 120.00263 * 359.97438 * 1 2 3 27 27 H 0.96700 * 113.99993 * 59.99701 * 11 9 7 28 28 H 1.09008 * 109.47334 * 58.01096 * 12 9 7 29 29 H 1.08997 * 109.47276 * 298.01030 * 12 9 7 30 30 H 1.09000 * 110.60708 * 317.82263 * 14 13 12 31 31 H 1.08994 * 110.60347 * 80.63082 * 14 13 12 32 32 H 1.09000 * 108.80937 * 271.40129 * 17 15 14 33 33 H 1.09005 * 108.80510 * 29.65177 * 17 15 14 34 34 H 1.08992 * 109.74753 * 60.93777 * 18 17 15 35 35 H 1.09003 * 109.74486 * 181.65627 * 18 17 15 36 36 H 1.08994 * 109.83225 * 187.97321 * 19 18 17 37 37 H 1.09004 * 109.82848 * 308.92508 * 19 18 17 38 38 H 1.08998 * 108.18213 * 184.50801 * 20 19 18 39 39 H 1.09002 * 108.10630 * 67.09691 * 20 19 18 40 40 H 0.96699 * 116.99352 * 179.97438 * 24 22 21 41 41 H 1.09004 * 110.39517 * 274.16106 * 25 13 12 42 42 H 1.08996 * 110.40531 * 36.57060 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 1 0.6240 -2.5575 0.8880 11 8 0.4297 -2.5741 -1.1688 12 6 2.2451 -3.6621 -0.0027 13 7 1.5112 -4.9338 0.0442 14 6 0.7838 -5.0824 1.3337 15 6 0.5061 -6.6105 1.4260 16 1 0.5227 -6.9247 2.4696 17 6 -0.8703 -6.8599 0.8424 18 6 -1.0053 -8.2401 0.2147 19 6 0.0514 -8.3653 -0.8908 20 6 1.4072 -8.3894 -0.2311 21 6 1.6701 -7.2355 0.6810 22 6 2.5932 -7.7620 1.7495 23 8 2.2610 -7.7179 2.9103 24 8 3.7846 -8.2799 1.4115 25 6 2.4461 -6.0901 0.0133 26 1 -0.4850 0.8400 0.0004 27 1 0.9221 -2.5282 -1.9998 28 1 2.8951 -3.5853 0.8690 29 1 2.8480 -3.6239 -0.9100 30 1 1.4071 -4.7548 2.1657 31 1 -0.1515 -4.5230 1.3132 32 1 -1.6115 -6.7605 1.6355 33 1 -1.0709 -6.1064 0.0808 34 1 -0.8392 -9.0067 0.9715 35 1 -2.0013 -8.3541 -0.2133 36 1 -0.1093 -9.2848 -1.4536 37 1 -0.0091 -7.5063 -1.5591 38 1 2.1660 -8.3969 -1.0136 39 1 1.4890 -9.3135 0.3411 40 1 4.3423 -8.6046 2.1317 41 1 2.6957 -6.3495 -1.0156 42 1 3.3499 -5.8634 0.5788 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601075406.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:04 Heat of formation + Delta-G solvation = -141.638952 kcal Electronic energy + Delta-G solvation = -23936.340231 eV Core-core repulsion = 20494.812433 eV Total energy + Delta-G solvation = -3441.527798 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.54389 -38.88517 -36.54988 -36.24246 -34.79097 -32.36237 -32.07476 -31.22824 -27.98369 -27.04645 -24.97611 -23.76162 -22.67856 -21.66657 -21.13949 -19.95501 -18.34740 -17.96264 -17.28843 -16.78082 -15.77551 -15.08075 -14.85842 -14.61920 -14.46783 -14.40509 -14.17488 -13.62446 -13.58220 -13.19752 -12.71066 -12.55209 -12.24758 -11.94918 -11.92894 -11.73891 -11.60775 -11.36751 -11.05165 -10.94884 -10.91374 -10.78360 -10.53450 -10.31672 -10.25823 -10.06065 -10.02816 -9.93831 -8.97993 -8.56744 -8.09606 -7.85582 -6.00019 -4.18333 2.14378 2.87349 3.26825 3.35115 3.38197 4.31162 4.37817 4.46621 4.59398 4.67730 5.00879 5.12678 5.13318 5.27786 5.33330 5.36194 5.46088 5.58703 5.69249 5.81296 5.83361 5.90107 5.95447 6.01767 6.04312 6.17474 6.23276 6.24767 6.29770 6.32632 6.39920 6.50726 6.54694 6.65288 6.79614 7.26192 7.50094 7.75836 7.78201 7.86822 8.20518 8.85649 9.46965 9.63167 11.04160 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.024649 B = 0.004585 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.676897 B = 6105.046758 C = 6616.114890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.575 4.575 8 H 0.054 0.946 9 C 0.239 3.761 10 H 0.054 0.946 11 O -0.554 6.554 12 C 0.018 3.982 13 N -0.490 5.490 14 C 0.037 3.963 15 C -0.088 4.088 16 H 0.102 0.898 17 C -0.107 4.107 18 C -0.118 4.118 19 C -0.116 4.116 20 C -0.095 4.095 21 C -0.022 4.022 22 C 0.473 3.527 23 O -0.514 6.514 24 O -0.513 6.513 25 C 0.041 3.959 26 H 0.260 0.740 27 H 0.343 0.657 28 H 0.028 0.972 29 H 0.066 0.934 30 H 0.039 0.961 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.405 0.595 41 H 0.090 0.910 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.013 -18.086 0.129 18.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.613 4.613 8 H 0.073 0.927 9 C 0.181 3.819 10 H 0.072 0.928 11 O -0.355 6.355 12 C -0.110 4.110 13 N -0.214 5.214 14 C -0.091 4.091 15 C -0.107 4.107 16 H 0.120 0.880 17 C -0.144 4.144 18 C -0.156 4.156 19 C -0.154 4.154 20 C -0.132 4.132 21 C -0.024 4.024 22 C 0.315 3.685 23 O -0.402 6.402 24 O -0.324 6.324 25 C -0.088 4.088 26 H 0.070 0.930 27 H 0.186 0.814 28 H 0.046 0.954 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.263 0.737 41 H 0.109 0.891 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.684 -17.844 0.147 17.924 hybrid contribution 2.192 0.893 1.015 2.575 sum 3.875 -16.951 1.162 17.427 Atomic orbital electron populations 1.70086 1.05898 1.26289 1.47079 1.25014 0.94673 0.99052 0.93841 0.86634 0.80199 0.83935 0.77705 1.19776 1.20828 1.20908 1.21691 0.93156 0.91642 1.54820 0.92744 1.19282 0.87716 0.88399 0.86545 0.92807 1.86559 1.37735 1.96282 1.14966 1.23293 0.97572 0.90339 0.99784 1.65628 1.22339 1.01485 1.31931 1.23616 1.00337 0.94299 0.90837 1.21530 0.93121 0.95450 1.00578 0.88032 1.21111 0.94823 0.97621 1.00883 1.21475 0.98900 0.97419 0.97789 1.21216 0.93692 1.02462 0.98013 1.20327 0.99542 0.95202 0.98167 1.20148 0.93361 0.96270 0.92602 1.24199 0.80563 0.73226 0.90468 1.90656 1.74604 1.53320 1.21581 1.84581 1.29838 1.73128 1.44880 1.23269 0.94120 0.90500 1.00865 0.93044 0.81429 0.95402 0.91593 0.94296 0.88786 0.92062 0.90227 0.92530 0.91696 0.91633 0.90441 0.90596 0.92344 0.73670 0.89145 0.93856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.38 12.84 55.43 0.71 -24.67 16 2 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.57 -15.76 8.76 -34.44 -0.30 -16.06 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.24 6.01 2.78 -27.89 -0.08 5.93 16 10 H 0.05 1.50 6.97 -51.93 -0.36 1.13 16 11 O -0.55 -14.26 12.63 -35.23 -0.45 -14.71 16 12 C 0.02 0.37 4.40 -3.83 -0.02 0.36 16 13 N -0.49 -8.76 5.30 -229.31 -1.22 -9.97 16 14 C 0.04 0.65 4.88 -1.40 -0.01 0.64 16 15 C -0.09 -1.28 2.70 -90.64 -0.24 -1.52 16 16 H 0.10 1.57 5.95 -51.93 -0.31 1.26 16 17 C -0.11 -1.40 5.10 -27.85 -0.14 -1.54 16 18 C -0.12 -1.28 5.97 -26.90 -0.16 -1.44 16 19 C -0.12 -1.21 6.00 -27.61 -0.17 -1.38 16 20 C -0.09 -1.03 4.50 -29.60 -0.13 -1.16 16 21 C -0.02 -0.29 0.87 -157.78 -0.14 -0.43 16 22 C 0.47 6.29 5.76 36.01 0.21 6.50 16 23 O -0.51 -8.16 15.52 -18.75 -0.29 -8.45 16 24 O -0.51 -5.26 12.95 -39.28 -0.51 -5.77 16 25 C 0.04 0.60 5.61 -2.49 -0.01 0.59 16 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.34 7.93 9.04 45.56 0.41 8.34 16 28 H 0.03 0.58 7.98 -51.92 -0.41 0.17 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.04 0.72 7.93 -51.93 -0.41 0.31 16 31 H 0.09 1.79 7.12 -51.93 -0.37 1.42 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.19 7.59 -51.93 -0.39 0.80 16 34 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.91 8.11 -51.93 -0.42 0.49 16 38 H 0.08 0.76 7.48 -51.93 -0.39 0.37 16 39 H 0.06 0.60 7.54 -51.93 -0.39 0.21 16 40 H 0.41 2.42 9.10 45.56 0.41 2.84 16 41 H 0.09 1.22 7.47 -51.93 -0.39 0.83 16 42 H 0.04 0.66 7.18 -51.93 -0.37 0.28 16 LS Contribution 329.03 15.07 4.96 4.96 Total: -1.00 -32.08 329.03 -8.15 -40.23 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -5.05 Total: 9.59 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -1.29 Total: -7.36 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: -0.50 Total: -34.64 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -1.24 Total: -28.92 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.08 -8.15 -40.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601075406.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.408 kcal (2) G-P(sol) polarization free energy of solvation -32.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds