Wall clock time and date at job start Tue Mar 31 2020 05:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 120.00360 * 2 1 4 4 H 1.48499 * 109.47290 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46828 * 300.00321 * 3 2 1 6 6 H 1.48502 * 109.47008 * 60.00156 * 3 2 1 7 7 C 1.37886 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99681 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47443 * 299.99445 * 9 7 2 11 11 O 1.42901 * 109.47741 * 59.99642 * 9 7 2 12 12 C 1.52997 * 109.47054 * 179.97438 * 9 7 2 13 13 N 1.46899 * 109.47285 * 178.00988 * 12 9 7 14 14 C 1.48795 * 111.00125 * 294.27144 * 13 12 9 15 15 C 1.55586 * 103.69312 * 199.22736 * 14 13 12 16 16 H 1.09001 * 109.70622 * 147.48003 * 15 14 13 17 17 C 1.51568 * 107.51065 * 266.56493 * 15 14 13 18 18 C 1.52222 * 112.86386 * 150.52343 * 17 15 14 19 19 C 1.53447 * 108.05768 * 301.29378 * 18 17 15 20 20 C 1.50791 * 107.77678 * 67.92275 * 19 18 17 21 21 C 1.49425 * 114.38536 * 305.82975 * 20 19 18 22 22 C 1.50700 * 105.70891 * 149.40548 * 21 20 19 23 23 O 1.20826 * 120.00113 * 238.87362 * 22 21 20 24 24 O 1.34237 * 119.99702 * 58.88124 * 22 21 20 25 25 C 1.48735 * 110.99984 * 178.71035 * 13 12 9 26 26 H 0.97001 * 120.00263 * 359.97438 * 1 2 3 27 27 H 0.96700 * 113.99993 * 59.99701 * 11 9 7 28 28 H 1.09008 * 109.47334 * 58.01096 * 12 9 7 29 29 H 1.08997 * 109.47276 * 298.01030 * 12 9 7 30 30 H 1.09000 * 110.60708 * 317.82263 * 14 13 12 31 31 H 1.08994 * 110.60347 * 80.63082 * 14 13 12 32 32 H 1.09000 * 108.80937 * 271.40129 * 17 15 14 33 33 H 1.09005 * 108.80510 * 29.65177 * 17 15 14 34 34 H 1.08992 * 109.74753 * 60.93777 * 18 17 15 35 35 H 1.09003 * 109.74486 * 181.65627 * 18 17 15 36 36 H 1.08994 * 109.83225 * 187.97321 * 19 18 17 37 37 H 1.09004 * 109.82848 * 308.92508 * 19 18 17 38 38 H 1.08998 * 108.18213 * 184.50801 * 20 19 18 39 39 H 1.09002 * 108.10630 * 67.09691 * 20 19 18 40 40 H 0.96699 * 116.99352 * 179.97438 * 24 22 21 41 41 H 1.09004 * 110.39517 * 274.16106 * 25 13 12 42 42 H 1.08996 * 110.40531 * 36.57060 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 1 0.6240 -2.5575 0.8880 11 8 0.4297 -2.5741 -1.1688 12 6 2.2451 -3.6621 -0.0027 13 7 1.5112 -4.9338 0.0442 14 6 0.7838 -5.0824 1.3337 15 6 0.5061 -6.6105 1.4260 16 1 0.5227 -6.9247 2.4696 17 6 -0.8703 -6.8599 0.8424 18 6 -1.0053 -8.2401 0.2147 19 6 0.0514 -8.3653 -0.8908 20 6 1.4072 -8.3894 -0.2311 21 6 1.6701 -7.2355 0.6810 22 6 2.5932 -7.7620 1.7495 23 8 2.2610 -7.7179 2.9103 24 8 3.7846 -8.2799 1.4115 25 6 2.4461 -6.0901 0.0133 26 1 -0.4850 0.8400 0.0004 27 1 0.9221 -2.5282 -1.9998 28 1 2.8951 -3.5853 0.8690 29 1 2.8480 -3.6239 -0.9100 30 1 1.4071 -4.7548 2.1657 31 1 -0.1515 -4.5230 1.3132 32 1 -1.6115 -6.7605 1.6355 33 1 -1.0709 -6.1064 0.0808 34 1 -0.8392 -9.0067 0.9715 35 1 -2.0013 -8.3541 -0.2133 36 1 -0.1093 -9.2848 -1.4536 37 1 -0.0091 -7.5063 -1.5591 38 1 2.1660 -8.3969 -1.0136 39 1 1.4890 -9.3135 0.3411 40 1 4.3423 -8.6046 2.1317 41 1 2.6957 -6.3495 -1.0156 42 1 3.3499 -5.8634 0.5788 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601075406.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:04 Heat of formation + Delta-G solvation = -166.589992 kcal Electronic energy + Delta-G solvation = -23937.422189 eV Core-core repulsion = 20494.812433 eV Total energy + Delta-G solvation = -3442.609756 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.63800 -40.01659 -38.13704 -37.22464 -36.35386 -34.22840 -33.43138 -32.55145 -29.78089 -28.20965 -26.76853 -24.79146 -23.99442 -23.15005 -22.17634 -21.51529 -19.41887 -19.09783 -18.95078 -18.15972 -16.84813 -16.69719 -16.42595 -16.21046 -16.14446 -15.54587 -15.32747 -15.07653 -14.82029 -14.61411 -14.28248 -13.82645 -13.52722 -13.29115 -13.04438 -13.00958 -12.85751 -12.82259 -12.69563 -12.61564 -12.44822 -12.20169 -12.00982 -11.92814 -11.33994 -11.27531 -11.08730 -11.05707 -10.93224 -10.71155 -10.08281 -9.38493 -8.14184 -6.40383 1.10830 1.38899 1.40068 1.52140 1.93118 2.37637 3.09395 3.13157 3.26381 3.33968 3.69086 3.98419 4.10737 4.13858 4.24215 4.27025 4.33682 4.38075 4.47278 4.52603 4.60477 4.64903 4.69238 4.82109 4.91410 4.93641 5.00237 5.03420 5.06386 5.26348 5.32567 5.36412 5.45378 5.52054 5.57168 5.62491 5.71241 5.88254 5.96996 6.14228 6.72907 6.89913 7.34271 7.63091 8.90570 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.024649 B = 0.004585 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.676897 B = 6105.046758 C = 6616.114890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.027 3.973 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.589 4.589 8 H 0.058 0.942 9 C 0.241 3.759 10 H 0.016 0.984 11 O -0.568 6.568 12 C 0.036 3.964 13 N -0.496 5.496 14 C 0.037 3.963 15 C -0.078 4.078 16 H 0.094 0.906 17 C -0.105 4.105 18 C -0.115 4.115 19 C -0.114 4.114 20 C -0.094 4.094 21 C -0.020 4.020 22 C 0.478 3.522 23 O -0.545 6.545 24 O -0.502 6.502 25 C 0.042 3.958 26 H 0.261 0.739 27 H 0.354 0.646 28 H 0.021 0.979 29 H 0.077 0.923 30 H 0.021 0.979 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.426 0.574 41 H 0.111 0.889 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.466 -19.703 -0.816 20.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.176 4.176 3 Si 0.785 3.215 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.206 1.206 7 C -0.628 4.628 8 H 0.076 0.924 9 C 0.183 3.817 10 H 0.034 0.966 11 O -0.371 6.371 12 C -0.093 4.093 13 N -0.219 5.219 14 C -0.091 4.091 15 C -0.097 4.097 16 H 0.112 0.888 17 C -0.142 4.142 18 C -0.152 4.152 19 C -0.151 4.151 20 C -0.132 4.132 21 C -0.021 4.021 22 C 0.322 3.678 23 O -0.435 6.435 24 O -0.315 6.315 25 C -0.086 4.086 26 H 0.070 0.930 27 H 0.198 0.802 28 H 0.039 0.961 29 H 0.096 0.904 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.288 0.712 41 H 0.129 0.871 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.175 -19.487 -0.806 19.761 hybrid contribution 1.753 1.366 1.328 2.589 sum 4.928 -18.121 0.522 18.787 Atomic orbital electron populations 1.70225 1.07673 1.27310 1.48381 1.25888 0.95465 1.02883 0.93335 0.85506 0.79112 0.79169 0.77748 1.18754 1.20240 1.20627 1.22079 0.93497 0.92844 1.54341 0.92366 1.19085 0.87636 0.89907 0.85107 0.96586 1.86504 1.38546 1.96420 1.15649 1.22902 0.96174 0.90221 0.99976 1.65543 1.23042 1.01445 1.31914 1.23532 0.98764 0.96569 0.90235 1.21428 0.94674 0.92882 1.00698 0.88805 1.21073 0.93967 0.98849 1.00359 1.21475 0.99996 0.95586 0.98141 1.21221 0.93143 1.03106 0.97613 1.20374 1.00326 0.94274 0.98193 1.20116 0.92474 0.96583 0.92967 1.24091 0.81174 0.72818 0.89721 1.90657 1.75420 1.54740 1.22710 1.84521 1.28795 1.72398 1.45771 1.23358 0.93447 0.89490 1.02272 0.92968 0.80203 0.96069 0.90421 0.96039 0.91460 0.91891 0.92588 0.91580 0.90460 0.88990 0.91992 0.88984 0.91027 0.71248 0.87134 0.94039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.42 12.84 21.45 0.28 -54.14 16 2 C 0.03 1.51 5.40 84.66 0.46 1.97 16 3 Si 0.96 43.67 29.54 68.60 2.03 45.69 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.59 -32.75 8.76 25.60 0.22 -32.53 16 8 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 9 C 0.24 12.53 2.78 29.85 0.08 12.61 16 10 H 0.02 0.96 6.97 -2.39 -0.02 0.94 16 11 O -0.57 -30.05 12.63 -148.98 -1.88 -31.93 16 12 C 0.04 1.49 4.40 86.30 0.38 1.87 16 13 N -0.50 -17.91 5.30 -879.41 -4.66 -22.57 16 14 C 0.04 1.37 4.88 86.83 0.42 1.80 16 15 C -0.08 -2.28 2.70 -10.81 -0.03 -2.31 16 16 H 0.09 2.94 5.95 -2.39 -0.01 2.92 16 17 C -0.10 -2.75 5.10 29.87 0.15 -2.60 16 18 C -0.11 -2.25 5.97 30.49 0.18 -2.07 16 19 C -0.11 -2.04 6.00 30.03 0.18 -1.86 16 20 C -0.09 -1.75 4.50 28.73 0.13 -1.62 16 21 C -0.02 -0.49 0.87 -54.30 -0.05 -0.54 16 22 C 0.48 11.84 5.76 71.24 0.41 12.25 16 23 O -0.54 -16.81 15.52 21.96 0.34 -16.47 16 24 O -0.50 -8.78 12.95 -51.48 -0.67 -9.45 16 25 C 0.04 1.18 5.61 86.15 0.48 1.67 16 26 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 27 H 0.35 16.57 9.04 -74.06 -0.67 15.91 16 28 H 0.02 0.90 7.98 -2.38 -0.02 0.88 16 29 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 30 H 0.02 0.84 7.93 -2.39 -0.02 0.83 16 31 H 0.07 2.79 7.12 -2.39 -0.02 2.78 16 32 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.06 1.73 7.59 -2.38 -0.02 1.72 16 34 H 0.07 1.20 8.10 -2.39 -0.02 1.18 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 1.33 8.11 -2.38 -0.02 1.31 16 38 H 0.09 1.46 7.48 -2.39 -0.02 1.44 16 39 H 0.07 1.19 7.54 -2.39 -0.02 1.17 16 40 H 0.43 3.80 9.10 -74.06 -0.67 3.13 16 41 H 0.11 2.67 7.47 -2.38 -0.02 2.66 16 42 H 0.04 1.19 7.18 -2.39 -0.02 1.18 16 Total: -1.00 -70.20 329.03 -1.85 -72.04 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: -0.31 Total: 28.19 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: 3.03 Total: -11.37 kcal Atomic # 7 Polarization: -72.33 SS G_CDS: -4.39 Total: -76.71 kcal Atomic # 8 Polarization: -55.64 SS G_CDS: -2.21 Total: -57.85 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -70.20 -1.85 -72.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601075406.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.548 kcal (2) G-P(sol) polarization free energy of solvation -70.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds