Wall clock time and date at job start Tue Mar 31 2020 06:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47440 * 2 1 4 4 C 1.52997 * 109.47076 * 239.99882 * 2 1 3 5 5 C 1.50704 * 109.47147 * 60.00281 * 4 2 1 6 6 H 1.08005 * 119.99783 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00276 * 180.02562 * 5 4 2 8 8 N 1.31518 * 119.99931 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00141 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47168 * 59.99862 * 9 7 5 11 11 H 1.48500 * 109.47261 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47365 * 299.99850 * 9 7 5 13 13 C 1.53003 * 109.47282 * 119.99962 * 2 1 3 14 14 N 1.46497 * 109.47207 * 299.99992 * 13 2 1 15 15 C 1.34774 * 120.00122 * 179.97438 * 14 13 2 16 16 O 1.21283 * 119.99857 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00119 * 179.97438 * 15 14 13 18 18 H 1.09005 * 109.47412 * 300.00009 * 17 15 14 19 19 C 1.50697 * 109.47264 * 60.00199 * 17 15 14 20 20 O 1.20821 * 120.00006 * 119.99661 * 19 17 15 21 21 O 1.34231 * 120.00099 * 299.99927 * 19 17 15 22 22 C 1.53003 * 109.47204 * 180.02562 * 17 15 14 23 23 C 1.53001 * 117.51964 * 111.28411 * 22 17 15 24 24 C 1.52999 * 60.00190 * 107.47982 * 23 22 17 25 25 H 1.09002 * 109.46932 * 300.00091 * 1 2 3 26 26 H 1.09000 * 109.47595 * 59.99474 * 1 2 3 27 27 H 1.08997 * 109.47580 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47084 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.46727 * 300.00574 * 3 2 1 30 30 H 1.09002 * 109.47133 * 60.00032 * 3 2 1 31 31 H 1.09000 * 109.47179 * 179.97438 * 4 2 1 32 32 H 1.08996 * 109.47327 * 300.00522 * 4 2 1 33 33 H 0.97002 * 119.99524 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47232 * 179.97438 * 13 2 1 35 35 H 1.09005 * 109.46643 * 60.00030 * 13 2 1 36 36 H 0.97003 * 119.99824 * 359.97438 * 14 13 2 37 37 H 0.96694 * 117.00085 * 179.97438 * 21 19 17 38 38 H 1.09002 * 115.54973 * 325.58194 * 22 17 15 39 39 H 1.09001 * 117.49733 * 214.97413 * 23 22 17 40 40 H 1.08995 * 117.49577 * 359.97438 * 23 22 17 41 41 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 42 42 H 1.09004 * 117.49681 * 107.48417 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8702 -0.4821 -3.7319 8 7 2.6263 -1.5515 -3.8526 9 14 1.2470 0.3981 -5.2571 10 1 1.7420 1.7981 -5.2576 11 1 1.7421 -0.3019 -6.4696 12 1 -0.2380 0.3981 -5.2567 13 6 2.0400 -0.7212 1.2493 14 7 1.5517 -0.0307 2.4454 15 6 1.8769 -0.4914 3.6695 16 8 2.5742 -1.4775 3.7807 17 6 1.3751 0.2193 4.9000 18 1 1.7392 1.2468 4.9001 19 6 -0.1319 0.2204 4.9000 20 8 -0.7364 -0.3024 5.8061 21 8 -0.8027 0.8022 3.8933 22 6 1.8850 -0.5020 6.1492 23 6 2.9212 0.2228 7.0105 24 6 1.4829 0.0713 7.5096 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9564 0.8900 31 1 3.1299 -0.7209 -1.2494 32 1 1.6765 -1.7489 -1.2493 33 1 2.8606 -1.8828 -4.7337 34 1 3.1300 -0.7216 1.2490 35 1 1.6766 -1.7489 1.2492 36 1 0.9943 0.7582 2.3564 37 1 -1.7683 0.7773 3.9369 38 1 1.9699 -1.5854 6.0648 39 1 3.6878 -0.3838 7.4927 40 1 3.2402 1.2135 6.6870 41 1 0.8553 0.9625 7.5146 42 1 1.3032 -0.6351 8.3201 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602933705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:45 Heat of formation + Delta-G solvation = -144.737822 kcal Electronic energy + Delta-G solvation = -22941.449313 eV Core-core repulsion = 19499.787138 eV Total energy + Delta-G solvation = -3441.662175 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.97817 -40.50314 -38.87734 -37.98652 -36.95077 -35.27266 -34.00490 -31.75016 -29.03636 -27.92467 -27.48905 -24.93682 -24.08152 -23.20987 -22.25996 -20.91160 -20.02623 -19.13386 -18.46232 -18.32713 -17.97035 -17.06259 -16.46214 -16.39511 -16.13372 -15.86520 -15.22812 -15.02966 -14.75957 -14.51082 -14.17965 -14.08266 -13.90768 -13.63551 -12.82519 -12.74751 -12.70179 -12.57842 -12.55301 -12.32500 -12.29222 -12.20461 -11.99233 -11.90916 -11.51024 -11.30483 -11.24158 -11.11348 -10.88773 -10.77691 -10.48909 -10.11223 -8.12337 -6.20084 0.91223 1.37023 1.44129 1.45959 1.53121 2.01053 2.11598 2.46224 3.03180 3.22297 3.27293 3.57521 3.95455 3.98573 4.04550 4.10300 4.16886 4.25669 4.34864 4.55405 4.72541 4.74333 4.80008 4.80666 5.00689 5.03367 5.11205 5.16280 5.21232 5.25594 5.38624 5.47282 5.53379 5.53880 5.56318 5.59066 5.82875 5.91941 6.31763 6.48772 6.88750 6.95234 7.14311 7.47789 9.00006 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.034016 B = 0.003506 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.950102 B = 7984.113132 C = 8387.557040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.065 4.065 3 C -0.122 4.122 4 C 0.040 3.960 5 C -0.514 4.514 6 H 0.074 0.926 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.266 1.266 11 H -0.293 1.293 12 H -0.267 1.267 13 C 0.139 3.861 14 N -0.698 5.698 15 C 0.518 3.482 16 O -0.568 6.568 17 C -0.063 4.063 18 H 0.170 0.830 19 C 0.495 3.505 20 O -0.521 6.521 21 O -0.506 6.506 22 C -0.157 4.157 23 C -0.159 4.159 24 C -0.150 4.150 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.034 0.966 28 H 0.038 0.962 29 H 0.056 0.944 30 H 0.071 0.929 31 H -0.013 1.013 32 H -0.016 1.016 33 H 0.259 0.741 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.418 0.582 37 H 0.435 0.565 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.101 0.899 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.555 10.100 19.743 22.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.065 4.065 3 C -0.180 4.180 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.092 0.908 7 C -0.202 4.202 8 N -0.581 5.581 9 Si 0.783 3.217 10 H -0.191 1.191 11 H -0.219 1.219 12 H -0.192 1.192 13 C 0.015 3.985 14 N -0.351 5.351 15 C 0.303 3.697 16 O -0.447 6.447 17 C -0.085 4.085 18 H 0.187 0.813 19 C 0.336 3.664 20 O -0.409 6.409 21 O -0.320 6.320 22 C -0.176 4.176 23 C -0.196 4.196 24 C -0.187 4.187 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.005 0.995 32 H 0.003 0.997 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.258 0.742 37 H 0.298 0.702 38 H 0.113 0.887 39 H 0.121 0.879 40 H 0.134 0.866 41 H 0.120 0.880 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.760 9.176 19.897 22.423 hybrid contribution -0.776 -0.162 -1.329 1.547 sum -5.536 9.014 18.568 21.370 Atomic orbital electron populations 1.21703 0.93546 1.00841 1.01854 1.20713 0.96795 0.96417 0.92606 1.21706 1.00034 0.94459 1.01768 1.18971 0.94333 0.94133 0.92347 1.21579 1.30440 1.12092 0.91048 0.90817 1.25943 0.95685 0.95851 1.02718 1.70119 1.38821 1.25011 1.24113 0.85608 0.78955 0.78799 0.78334 1.19055 1.21873 1.19157 1.21291 0.98141 0.95340 0.83745 1.46005 1.52520 1.32180 1.04436 1.20243 0.80487 0.84221 0.84732 1.90723 1.39574 1.27474 1.86930 1.20781 0.89025 1.04887 0.93795 0.81282 1.22698 0.90471 0.74119 0.79092 1.90739 1.70266 1.42584 1.37319 1.84411 1.28992 1.72015 1.46628 1.21677 1.07004 0.99206 0.89701 1.23231 0.92604 1.02241 1.01484 1.22928 0.97648 1.02965 0.95164 0.90755 0.92568 0.94725 0.94231 0.92540 0.91005 0.99483 0.99720 0.93219 0.92959 0.93633 0.74212 0.70166 0.88723 0.87862 0.86623 0.88048 0.88286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.93 8.05 71.98 0.58 -3.35 16 2 C -0.06 -2.36 0.54 -52.18 -0.03 -2.39 16 3 C -0.12 -3.88 8.05 71.98 0.58 -3.30 16 4 C 0.04 1.98 4.04 29.85 0.12 2.10 16 5 C -0.51 -27.02 7.65 25.60 0.20 -26.83 16 6 H 0.07 3.60 5.68 -2.91 -0.02 3.58 16 7 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 8 N -0.94 -56.76 13.29 21.45 0.28 -56.47 16 9 Si 0.96 42.98 29.54 68.60 2.03 45.01 16 10 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 12 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 13 C 0.14 4.77 4.56 86.38 0.39 5.16 16 14 N -0.70 -18.09 4.72 -463.06 -2.19 -20.28 16 15 C 0.52 14.10 7.14 87.66 0.63 14.73 16 16 O -0.57 -20.63 15.65 -3.04 -0.05 -20.67 16 17 C -0.06 -1.20 2.80 -12.29 -0.03 -1.24 16 18 H 0.17 1.96 7.90 -2.38 -0.02 1.94 16 19 C 0.49 9.27 7.49 71.23 0.53 9.80 16 20 O -0.52 -12.59 15.85 21.98 0.35 -12.24 16 21 O -0.51 -6.32 11.88 -51.42 -0.61 -6.93 16 22 C -0.16 -3.27 4.33 -10.79 -0.05 -3.31 16 23 C -0.16 -2.39 10.18 30.59 0.31 -2.08 16 24 C -0.15 -2.43 8.98 30.60 0.27 -2.16 16 25 H 0.07 1.77 6.86 -2.39 -0.02 1.75 16 26 H 0.06 1.94 6.62 -2.39 -0.02 1.93 16 27 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.06 1.93 6.62 -2.39 -0.02 1.92 16 30 H 0.07 1.67 6.86 -2.39 -0.02 1.65 16 31 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 32 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 33 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 34 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 35 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.42 8.50 4.83 -92.71 -0.45 8.05 16 37 H 0.44 2.04 9.10 -74.06 -0.67 1.36 16 38 H 0.09 2.53 7.47 -2.39 -0.02 2.51 16 39 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.12 1.28 8.05 -2.39 -0.02 1.26 16 41 H 0.10 1.46 8.10 -2.39 -0.02 1.44 16 42 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -72.82 343.05 3.70 -69.12 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -0.08 Total: 15.15 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 3.97 Total: -12.68 kcal Atomic # 7 Polarization: -74.84 SS G_CDS: -1.90 Total: -76.75 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -0.31 Total: -39.85 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -72.82 3.70 -69.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602933705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.617 kcal (2) G-P(sol) polarization free energy of solvation -72.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds