Wall clock time and date at job start Tue Mar 31 2020 06:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46991 * 2 1 4 4 C 1.53006 * 109.46626 * 240.00378 * 2 1 3 5 5 C 1.50701 * 109.47180 * 59.99687 * 4 2 1 6 6 H 1.07995 * 119.99918 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99755 * 179.97438 * 5 4 2 8 8 N 1.31508 * 119.99915 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99825 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47104 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47457 * 119.99763 * 9 7 5 12 12 H 1.48499 * 109.46616 * 240.00125 * 9 7 5 13 13 C 1.52997 * 109.47592 * 120.00342 * 2 1 3 14 14 N 1.46496 * 109.47079 * 300.00206 * 13 2 1 15 15 C 1.34774 * 120.00140 * 180.02562 * 14 13 2 16 16 O 1.21282 * 119.99971 * 359.97438 * 15 14 13 17 17 C 1.50706 * 120.00164 * 179.97438 * 15 14 13 18 18 H 1.09001 * 109.46953 * 59.99903 * 17 15 14 19 19 C 1.50698 * 109.47294 * 300.00461 * 17 15 14 20 20 O 1.20825 * 119.99963 * 359.97438 * 19 17 15 21 21 O 1.34225 * 119.99990 * 179.97438 * 19 17 15 22 22 C 1.52997 * 109.47103 * 180.02562 * 17 15 14 23 23 C 1.53004 * 117.49671 * 248.74681 * 22 17 15 24 24 C 1.52999 * 117.49902 * 180.09301 * 22 17 15 25 25 H 1.09002 * 109.46724 * 299.99154 * 1 2 3 26 26 H 1.08993 * 109.47839 * 59.99553 * 1 2 3 27 27 H 1.09000 * 109.47160 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47289 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47261 * 300.00382 * 3 2 1 30 30 H 1.09002 * 109.47153 * 60.00555 * 3 2 1 31 31 H 1.09001 * 109.47002 * 179.97438 * 4 2 1 32 32 H 1.09000 * 109.47050 * 299.99699 * 4 2 1 33 33 H 0.97001 * 119.99839 * 180.02562 * 8 7 5 34 34 H 1.08992 * 109.47280 * 179.97438 * 13 2 1 35 35 H 1.09000 * 109.47140 * 59.99654 * 13 2 1 36 36 H 0.97005 * 120.00064 * 359.97438 * 14 13 2 37 37 H 0.96699 * 116.99846 * 179.97438 * 21 19 17 38 38 H 1.08996 * 115.54958 * 34.41578 * 22 17 15 39 39 H 1.09003 * 117.50118 * 0.02562 * 23 22 17 40 40 H 1.09002 * 117.49651 * 145.01664 * 23 22 17 41 41 H 1.08999 * 117.49748 * 214.98026 * 24 22 17 42 42 H 1.09006 * 117.49960 * 359.97438 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.5374 -0.0108 -2.4798 6 1 0.9169 0.8675 -2.3806 7 6 1.8709 -0.4815 -3.7321 8 7 2.6269 -1.5507 -3.8528 9 14 1.2487 0.3995 -5.2572 10 1 0.4231 1.5658 -4.8529 11 1 2.4038 0.8665 -6.0651 12 1 0.4238 -0.5337 -6.0659 13 6 2.0401 -0.7213 1.2491 14 7 1.5518 -0.0308 2.4453 15 6 1.8779 -0.4910 3.6694 16 8 2.5752 -1.4770 3.7806 17 6 1.3760 0.2197 4.9000 18 1 0.2860 0.2196 4.9004 19 6 1.8782 1.6405 4.8995 20 8 2.5728 2.0354 3.9931 21 8 1.5539 2.4673 5.9059 22 6 1.8871 -0.5010 6.1491 23 6 0.8587 -1.2364 7.0108 24 6 1.4816 0.0698 7.5095 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8898 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1299 -0.7209 -1.2497 32 1 1.6765 -1.7489 -1.2494 33 1 2.8618 -1.8817 -4.7338 34 1 3.1300 -0.7217 1.2489 35 1 1.6768 -1.7490 1.2491 36 1 0.9943 0.7581 2.3564 37 1 1.8998 3.3692 5.8619 38 1 2.8801 -0.9421 6.0641 39 1 -0.1819 -1.2072 6.6876 40 1 1.1754 -2.1613 7.4930 41 1 2.2079 0.0038 8.3196 42 1 0.8511 0.9590 7.5146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602933707.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:49 Heat of formation + Delta-G solvation = -121.918043 kcal Electronic energy + Delta-G solvation = -22911.922299 eV Core-core repulsion = 19471.249664 eV Total energy + Delta-G solvation = -3440.672635 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.06673 -39.32269 -37.65507 -36.84546 -36.32065 -33.62081 -32.14411 -30.69897 -27.08817 -26.47051 -26.09621 -23.46868 -22.89648 -22.45164 -21.27034 -19.96683 -18.57098 -18.25227 -17.13819 -16.92997 -16.41873 -16.18761 -15.42803 -14.93680 -14.70673 -14.50509 -14.18054 -13.75795 -13.50380 -13.06963 -12.90814 -12.71486 -12.10859 -12.04738 -12.02026 -11.84224 -11.59104 -11.18185 -11.10958 -11.00266 -10.81970 -10.64051 -10.61742 -10.38638 -10.27428 -10.22148 -9.91963 -9.85100 -9.15686 -8.89692 -8.72202 -8.34746 -5.98593 -3.99588 1.85747 2.24765 3.07492 3.15771 3.31104 3.39132 3.41724 3.69882 4.22196 4.44974 4.48603 4.61028 4.71387 4.92944 5.03782 5.26061 5.37098 5.43904 5.53984 5.64023 5.65635 5.78385 5.87435 5.96664 6.17418 6.19650 6.28413 6.29803 6.43587 6.56264 6.66726 6.77870 7.08020 7.11694 7.15090 7.56892 7.65336 7.68089 7.78609 8.00444 8.30505 8.42910 9.05390 9.63431 11.12973 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.034165 B = 0.003479 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.354447 B = 8047.510986 C = 8445.572462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.129 3.871 14 N -0.705 5.705 15 C 0.528 3.472 16 O -0.530 6.530 17 C -0.073 4.073 18 H 0.131 0.869 19 C 0.489 3.511 20 O -0.494 6.494 21 O -0.509 6.509 22 C -0.142 4.142 23 C -0.167 4.167 24 C -0.169 4.169 25 H 0.027 0.973 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.030 0.970 31 H 0.019 0.981 32 H 0.018 0.982 33 H 0.259 0.741 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.398 0.602 37 H 0.411 0.589 38 H 0.124 0.876 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.395 6.345 21.955 23.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.548 4.548 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.006 3.994 14 N -0.355 5.355 15 C 0.311 3.689 16 O -0.406 6.406 17 C -0.095 4.095 18 H 0.149 0.851 19 C 0.329 3.671 20 O -0.380 6.380 21 O -0.322 6.322 22 C -0.161 4.161 23 C -0.204 4.204 24 C -0.206 4.206 25 H 0.046 0.954 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.049 0.951 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.233 0.767 37 H 0.271 0.729 38 H 0.142 0.858 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.764 5.227 21.630 22.757 hybrid contribution -0.312 1.390 -1.074 1.784 sum -5.076 6.617 20.556 22.183 Atomic orbital electron populations 1.21764 0.95350 1.01115 1.00182 1.20912 0.95397 0.96022 0.94983 1.21741 1.00662 0.95724 1.00171 1.19096 0.96409 0.95182 0.89454 1.21225 1.31067 1.12010 0.90506 0.92202 1.25015 0.95341 0.95094 0.99085 1.69974 1.37026 1.23098 1.23304 0.86592 0.78599 0.79674 0.83457 1.19811 1.21138 1.21149 1.21670 0.99171 0.95838 0.82687 1.46077 1.52508 1.31312 1.05608 1.19477 0.80892 0.84712 0.83827 1.90714 1.37255 1.26392 1.86266 1.20859 1.03791 0.88542 0.96336 0.85123 1.22828 0.77654 0.87561 0.79029 1.90850 1.34603 1.76719 1.35830 1.84517 1.72217 1.27501 1.47921 1.21878 1.01614 1.04051 0.88507 1.23074 0.97933 0.96540 1.02856 1.23135 1.03797 0.97796 0.95903 0.95430 0.91374 0.93302 0.93339 0.91584 0.95098 0.96300 0.96324 0.93110 0.91614 0.91603 0.76661 0.72938 0.85764 0.88493 0.88230 0.88488 0.87441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 2 C -0.07 -1.42 0.54 -154.51 -0.08 -1.51 16 3 C -0.13 -2.36 8.05 37.16 0.30 -2.06 16 4 C 0.04 0.90 4.04 -27.88 -0.11 0.79 16 5 C -0.51 -13.69 7.65 -34.44 -0.26 -13.95 16 6 H 0.06 1.55 5.68 -52.49 -0.30 1.25 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 9 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.13 2.36 4.56 -4.05 -0.02 2.34 16 14 N -0.70 -10.81 4.35 -60.30 -0.26 -11.08 16 15 C 0.53 7.98 6.65 -10.98 -0.07 7.91 16 16 O -0.53 -9.84 15.65 5.56 0.09 -9.75 16 17 C -0.07 -0.78 2.80 -92.92 -0.26 -1.04 16 18 H 0.13 1.04 7.90 -51.93 -0.41 0.63 16 19 C 0.49 5.20 7.48 36.00 0.27 5.47 16 20 O -0.49 -7.08 16.15 -18.75 -0.30 -7.38 16 21 O -0.51 -3.52 11.36 -39.24 -0.45 -3.97 16 22 C -0.14 -1.42 4.74 -90.62 -0.43 -1.85 16 23 C -0.17 -1.32 10.18 -26.70 -0.27 -1.59 16 24 C -0.17 -1.26 9.45 -26.70 -0.25 -1.51 16 25 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 26 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.07 1.31 6.62 -51.93 -0.34 0.96 16 30 H 0.03 0.50 6.86 -51.93 -0.36 0.14 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.40 5.44 5.85 -40.82 -0.24 5.20 16 37 H 0.41 1.29 9.10 45.56 0.41 1.71 16 38 H 0.12 1.49 7.47 -51.93 -0.39 1.10 16 39 H 0.10 0.67 8.05 -51.93 -0.42 0.25 16 40 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.11 0.73 6.85 -51.93 -0.36 0.37 16 LS Contribution 342.61 15.07 5.16 5.16 Total: -1.00 -33.32 342.61 -6.65 -39.97 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.61 Total: 4.08 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -0.99 Total: -7.50 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.47 Total: -36.96 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.66 Total: -21.10 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.32 -6.65 -39.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602933707.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.949 kcal (2) G-P(sol) polarization free energy of solvation -33.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds