Wall clock time and date at job start Tue Mar 31 2020 06:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46809 * 2 1 4 4 C 1.52996 * 109.47301 * 119.99719 * 2 1 3 5 5 H 1.09000 * 109.47234 * 300.00536 * 4 2 1 6 6 C 1.50697 * 109.47491 * 179.97438 * 4 2 1 7 7 O 1.20833 * 119.99747 * 0.02562 * 6 4 2 8 8 O 1.34230 * 120.00262 * 179.72204 * 6 4 2 9 9 C 1.50707 * 109.47175 * 60.00003 * 4 2 1 10 10 O 1.21283 * 119.99517 * 0.02562 * 9 4 2 11 11 N 1.34776 * 120.00231 * 179.97438 * 9 4 2 12 12 C 1.46498 * 119.99883 * 179.97438 * 11 9 4 13 13 H 1.08998 * 110.01959 * 325.70355 * 12 11 9 14 14 C 1.54268 * 110.02845 * 87.09561 * 12 11 9 15 15 C 1.55011 * 104.13870 * 95.68760 * 14 12 11 16 16 C 1.54884 * 102.75521 * 37.94736 * 15 14 12 17 17 H 1.08998 * 110.49168 * 80.72753 * 16 15 14 18 18 C 1.50702 * 110.59949 * 203.31655 * 16 15 14 19 19 H 1.08001 * 120.00228 * 114.83919 * 18 16 15 20 20 C 1.37879 * 120.00027 * 294.84115 * 18 16 15 21 21 N 1.31522 * 119.99844 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 120.00316 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46958 * 90.00264 * 22 20 18 24 24 H 1.48503 * 109.47148 * 209.99902 * 22 20 18 25 25 H 1.48501 * 109.47386 * 330.00315 * 22 20 18 26 26 C 1.53875 * 110.03336 * 204.30947 * 12 11 9 27 27 H 1.09001 * 109.47245 * 59.99724 * 1 2 3 28 28 H 1.08996 * 109.47187 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46785 * 299.99899 * 1 2 3 30 30 H 1.08994 * 109.46775 * 239.99961 * 2 1 3 31 31 H 1.09003 * 109.46745 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46985 * 299.99879 * 3 2 1 33 33 H 1.08994 * 109.47484 * 60.00396 * 3 2 1 34 34 H 0.96699 * 116.99771 * 180.27188 * 8 6 4 35 35 H 0.97004 * 119.99568 * 0.02562 * 11 9 4 36 36 H 1.09003 * 110.48171 * 214.34869 * 14 12 11 37 37 H 1.08999 * 110.48642 * 336.98814 * 14 12 11 38 38 H 1.09005 * 110.75959 * 279.62917 * 15 14 12 39 39 H 1.08996 * 110.74341 * 156.26298 * 15 14 12 40 40 H 0.97001 * 120.00117 * 180.02562 * 21 20 18 41 41 H 1.09005 * 110.03138 * 0.02562 * 26 12 11 42 42 H 1.08994 * 110.03475 * 121.43169 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 3.5470 -0.7217 1.2490 7 8 4.1512 -0.1985 0.3427 8 8 4.2182 -1.2981 2.2585 9 6 1.5377 -2.1420 1.2493 10 8 0.8408 -2.5388 0.3395 11 7 1.8638 -2.9720 2.2599 12 6 1.3750 -4.3531 2.2602 13 1 0.3803 -4.3969 1.8167 14 6 2.3453 -5.2571 1.4721 15 6 3.2632 -5.8678 2.5617 16 6 2.2834 -6.1142 3.7356 17 1 1.7255 -7.0375 3.5797 18 6 3.0270 -6.1636 5.0455 19 1 2.8523 -5.4056 5.7946 20 6 3.9305 -7.1767 5.2875 21 7 4.1437 -8.0995 4.3750 22 14 4.8528 -7.2376 6.9108 23 1 4.0742 -8.0343 7.8928 24 1 6.1804 -7.8694 6.7023 25 1 5.0368 -5.8577 7.4277 26 6 1.3352 -4.8979 3.6987 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 5.1839 -1.2698 2.2163 35 1 2.4215 -2.6547 2.9874 36 1 1.7971 -6.0420 0.9509 37 1 2.9298 -4.6661 0.7670 38 1 4.0423 -5.1623 2.8504 39 1 3.6984 -6.8063 2.2183 40 1 4.7790 -8.8124 4.5454 41 1 1.6792 -4.1345 4.3967 42 1 0.3214 -5.2069 3.9531 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602970518.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:22 Heat of formation + Delta-G solvation = -152.208335 kcal Electronic energy + Delta-G solvation = -23395.482900 eV Core-core repulsion = 19953.496779 eV Total energy + Delta-G solvation = -3441.986120 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.07866 -39.42408 -37.44844 -36.50968 -35.17943 -33.66188 -32.05791 -29.64174 -28.17641 -27.17781 -26.85682 -23.90232 -22.77499 -21.45667 -19.92041 -19.46180 -19.12427 -18.27273 -17.32662 -17.13907 -16.60144 -15.72305 -15.35660 -14.87153 -14.55335 -14.42410 -13.99136 -13.93536 -13.55204 -12.87486 -12.56137 -12.40559 -12.34674 -12.18828 -11.86612 -11.74008 -11.42735 -11.29272 -11.04976 -11.01429 -10.88128 -10.82925 -10.60084 -10.51364 -10.37276 -9.98389 -9.61062 -9.51484 -9.24355 -8.84807 -8.63402 -8.38097 -6.03630 -4.06811 1.86557 2.43321 3.06605 3.27720 3.34651 3.35337 3.37410 4.24214 4.40989 4.65215 4.86875 5.04080 5.18077 5.27699 5.28106 5.46512 5.54244 5.57466 5.61910 5.78169 5.78675 5.91559 6.04893 6.19320 6.21308 6.30745 6.39023 6.47444 6.56009 6.60855 6.71142 6.87708 6.91544 7.22250 7.30995 7.66852 7.67998 7.74744 7.83553 7.99663 8.35411 8.40267 8.95820 9.57384 11.05806 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.025539 B = 0.004244 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.095536 B = 6596.575726 C = 7129.788693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.062 4.062 3 C -0.162 4.162 4 C -0.101 4.101 5 H 0.133 0.867 6 C 0.489 3.511 7 O -0.501 6.501 8 O -0.509 6.509 9 C 0.517 3.483 10 O -0.528 6.528 11 N -0.702 5.702 12 C 0.139 3.861 13 H 0.077 0.923 14 C -0.136 4.136 15 C -0.098 4.098 16 C 0.048 3.952 17 H 0.033 0.967 18 C -0.514 4.514 19 H 0.055 0.945 20 C 0.063 3.937 21 N -0.888 5.888 22 Si 0.888 3.112 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.122 4.122 27 H 0.057 0.943 28 H 0.087 0.913 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.417 0.583 35 H 0.406 0.594 36 H 0.062 0.938 37 H 0.048 0.952 38 H 0.047 0.953 39 H 0.066 0.934 40 H 0.260 0.740 41 H 0.062 0.938 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.367 15.632 -5.039 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.081 4.081 3 C -0.219 4.219 4 C -0.124 4.124 5 H 0.150 0.850 6 C 0.331 3.669 7 O -0.388 6.388 8 O -0.322 6.322 9 C 0.301 3.699 10 O -0.406 6.406 11 N -0.354 5.354 12 C 0.035 3.965 13 H 0.095 0.905 14 C -0.174 4.174 15 C -0.137 4.137 16 C 0.029 3.971 17 H 0.051 0.949 18 C -0.552 4.552 19 H 0.073 0.927 20 C -0.139 4.139 21 N -0.527 5.527 22 Si 0.717 3.283 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.160 4.160 27 H 0.076 0.924 28 H 0.105 0.895 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.277 0.723 35 H 0.243 0.757 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.019 15.289 -5.935 16.886 hybrid contribution 1.570 0.100 1.290 2.035 sum -2.449 15.389 -4.644 16.260 Atomic orbital electron populations 1.22083 0.93636 1.04528 1.01285 1.20767 0.96650 0.95605 0.95059 1.22131 1.03245 0.94830 1.01656 1.21473 0.88689 0.97555 1.04646 0.84966 1.22866 0.90741 0.74254 0.79070 1.90673 1.70109 1.41944 1.36109 1.84498 1.27363 1.72810 1.47485 1.19793 0.81241 0.85973 0.82901 1.90649 1.38128 1.76311 1.35478 1.46386 1.52042 1.12505 1.24430 1.21842 0.97341 0.79072 0.98236 0.90456 1.22859 0.98215 0.98077 0.98270 1.22472 0.97320 0.99395 0.94480 1.19462 0.91698 0.91797 0.94100 0.94909 1.21160 1.22934 1.10437 1.00695 0.92687 1.24979 0.96889 0.95563 0.96452 1.69961 1.35319 1.13785 1.33602 0.86658 0.79287 0.78135 0.84259 1.20764 1.21339 1.19967 1.22613 1.00511 1.00349 0.92572 0.92431 0.89460 0.93261 0.89660 0.90424 0.92217 0.93112 0.72297 0.75718 0.91969 0.93324 0.93405 0.91537 0.93068 0.91918 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 8.87 37.16 0.33 -1.37 16 2 C -0.06 -0.71 1.79 -90.62 -0.16 -0.87 16 3 C -0.16 -1.59 8.87 37.16 0.33 -1.26 16 4 C -0.10 -1.16 2.24 -92.92 -0.21 -1.37 16 5 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 6 C 0.49 5.82 7.32 36.00 0.26 6.08 16 7 O -0.50 -6.96 14.42 -18.76 -0.27 -7.23 16 8 O -0.51 -5.14 11.89 -39.26 -0.47 -5.60 16 9 C 0.52 7.52 6.84 -10.98 -0.08 7.44 16 10 O -0.53 -9.12 13.33 5.56 0.07 -9.04 16 11 N -0.70 -10.46 4.80 -52.72 -0.25 -10.71 16 12 C 0.14 2.40 3.23 -66.81 -0.22 2.19 16 13 H 0.08 1.35 7.59 -51.93 -0.39 0.96 16 14 C -0.14 -2.57 6.54 -25.01 -0.16 -2.74 16 15 C -0.10 -2.19 5.75 -24.68 -0.14 -2.33 16 16 C 0.05 1.13 2.72 -90.11 -0.24 0.88 16 17 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 18 C -0.51 -13.36 8.47 -34.44 -0.29 -13.65 16 19 H 0.05 1.40 7.55 -52.49 -0.40 1.00 16 20 C 0.06 1.68 5.35 -17.82 -0.10 1.59 16 21 N -0.89 -24.85 12.29 55.43 0.68 -24.16 16 22 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 C -0.12 -2.32 6.13 -25.61 -0.16 -2.48 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.09 1.15 5.51 -51.93 -0.29 0.86 16 29 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 30 H 0.09 1.14 8.06 -51.93 -0.42 0.73 16 31 H 0.08 0.88 5.52 -51.93 -0.29 0.59 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.42 2.67 9.10 45.56 0.41 3.08 16 35 H 0.41 5.58 6.98 -40.82 -0.28 5.30 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.05 0.91 8.04 -51.93 -0.42 0.49 16 38 H 0.05 1.08 8.05 -51.93 -0.42 0.66 16 39 H 0.07 1.64 7.56 -51.93 -0.39 1.24 16 40 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.06 1.15 7.13 -51.93 -0.37 0.78 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 336.24 15.07 5.07 5.07 Total: -1.00 -30.37 336.24 -6.79 -37.16 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -5.77 Total: 6.87 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -0.83 Total: -7.89 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.43 Total: -34.87 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.66 Total: -21.88 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.37 -6.79 -37.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602970518.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.053 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds