Wall clock time and date at job start Tue Mar 31 2020 06:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47384 * 2 1 4 4 C 1.52999 * 109.47303 * 120.00567 * 2 1 3 5 5 H 1.08993 * 109.46773 * 300.00165 * 4 2 1 6 6 C 1.50707 * 109.47007 * 59.99820 * 4 2 1 7 7 O 1.20822 * 120.00292 * 119.99932 * 6 4 2 8 8 O 1.34229 * 119.99555 * 299.99909 * 6 4 2 9 9 C 1.50698 * 109.47004 * 179.97438 * 4 2 1 10 10 O 1.21283 * 120.00472 * 0.02562 * 9 4 2 11 11 N 1.34777 * 119.99538 * 179.97438 * 9 4 2 12 12 C 1.46499 * 119.99665 * 179.72653 * 11 9 4 13 13 H 1.09003 * 110.01811 * 326.66959 * 12 11 9 14 14 C 1.54262 * 110.03266 * 88.11264 * 12 11 9 15 15 C 1.54886 * 104.19724 * 95.67527 * 14 12 11 16 16 C 1.54886 * 102.75030 * 37.94440 * 15 14 12 17 17 H 1.08997 * 110.48947 * 80.73815 * 16 15 14 18 18 C 1.50698 * 110.59907 * 203.32913 * 16 15 14 19 19 H 1.07996 * 120.00444 * 114.83887 * 18 16 15 20 20 C 1.37882 * 119.99780 * 294.83441 * 18 16 15 21 21 N 1.31509 * 119.99774 * 0.02562 * 20 18 16 22 22 Si 1.86803 * 119.99971 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47187 * 90.00108 * 22 20 18 24 24 H 1.48501 * 109.46801 * 210.00111 * 22 20 18 25 25 H 1.48499 * 109.47055 * 330.00295 * 22 20 18 26 26 C 1.53883 * 110.03422 * 205.27946 * 12 11 9 27 27 H 1.09001 * 109.47077 * 59.99240 * 1 2 3 28 28 H 1.08995 * 109.47540 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46719 * 299.99652 * 1 2 3 30 30 H 1.09007 * 109.46897 * 240.00761 * 2 1 3 31 31 H 1.09003 * 109.47244 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47634 * 300.00419 * 3 2 1 33 33 H 1.09001 * 109.46908 * 60.00464 * 3 2 1 34 34 H 0.96701 * 116.99603 * 180.02562 * 8 6 4 35 35 H 0.97001 * 120.00485 * 0.02562 * 11 9 4 36 36 H 1.09010 * 110.48761 * 214.35356 * 14 12 11 37 37 H 1.09003 * 110.48574 * 336.99520 * 14 12 11 38 38 H 1.09001 * 110.75640 * 279.62601 * 15 14 12 39 39 H 1.08999 * 110.91935 * 156.32998 * 15 14 12 40 40 H 0.97008 * 120.00235 * 179.97438 * 21 20 18 41 41 H 1.09005 * 110.02918 * 0.02562 * 26 12 11 42 42 H 1.08997 * 110.03173 * 121.37914 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.6767 -0.2076 2.1391 6 6 1.5376 -2.1422 1.2490 7 8 2.3227 -3.0606 1.2489 8 8 0.2179 -2.3874 1.2491 9 6 3.5470 -0.7219 1.2488 10 8 4.1535 -0.1966 0.3392 11 7 4.2209 -1.3052 2.2598 12 6 5.6858 -1.3110 2.2564 13 1 6.0564 -1.3749 1.2333 14 6 6.2209 -0.0328 2.9344 15 6 6.4922 -0.4638 4.3971 16 6 7.0456 -1.9011 4.2330 17 1 8.1016 -1.8749 3.9642 18 6 6.8441 -2.6945 5.4982 19 1 6.1846 -3.5498 5.5001 20 6 7.5019 -2.3287 6.6535 21 7 8.3046 -1.2870 6.6513 22 14 7.2527 -3.3127 8.2217 23 1 8.2603 -4.4015 8.2882 24 1 7.4111 -2.4190 9.3971 25 1 5.8886 -3.8996 8.2263 26 6 6.2102 -2.4990 3.0820 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6768 1.9562 0.8900 34 1 -0.0563 -3.3147 1.2494 35 1 3.7359 -1.7251 2.9874 36 1 7.1438 0.2952 2.4559 37 1 5.4715 0.7582 2.9025 38 1 5.5685 -0.4693 4.9759 39 1 7.2341 0.1849 4.8628 40 1 8.7671 -1.0294 7.4641 41 1 5.3747 -3.0715 3.4849 42 1 6.8351 -3.1393 2.4596 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602970519.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:25 Heat of formation + Delta-G solvation = -150.578661 kcal Electronic energy + Delta-G solvation = -23281.607889 eV Core-core repulsion = 19839.692437 eV Total energy + Delta-G solvation = -3441.915452 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.09841 -39.37430 -37.35863 -36.43412 -35.53222 -33.58470 -31.99792 -29.51382 -28.13344 -27.27805 -26.82520 -23.90020 -22.85846 -21.36516 -20.02664 -19.37506 -19.04959 -18.40820 -17.30429 -16.95868 -16.56114 -15.92891 -15.36346 -14.85494 -14.57616 -14.20880 -14.09793 -13.64168 -13.57895 -12.96801 -12.85610 -12.47673 -12.29622 -12.20120 -11.95175 -11.68370 -11.44384 -11.03746 -11.00259 -10.99383 -10.91611 -10.77709 -10.63396 -10.54196 -10.38160 -9.94484 -9.59767 -9.49018 -9.19586 -8.81198 -8.56410 -8.35215 -6.01082 -4.03923 1.93203 2.32575 3.13410 3.29741 3.36689 3.37276 3.39728 4.32497 4.43437 4.62016 4.76395 5.00929 5.13923 5.17464 5.30841 5.42684 5.55146 5.60321 5.68075 5.75670 5.83770 5.88983 6.01647 6.16462 6.22763 6.28071 6.36124 6.44933 6.59741 6.66356 6.77903 6.92791 6.97291 7.26119 7.33909 7.62208 7.70047 7.79847 7.87190 8.02728 8.41015 8.44095 8.98809 9.60066 11.08391 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.023883 B = 0.004144 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.116847 B = 6755.758395 C = 7358.737391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.069 4.069 3 C -0.158 4.158 4 C -0.103 4.103 5 H 0.132 0.868 6 C 0.487 3.513 7 O -0.496 6.496 8 O -0.506 6.506 9 C 0.528 3.472 10 O -0.532 6.532 11 N -0.696 5.696 12 C 0.141 3.859 13 H 0.077 0.923 14 C -0.135 4.135 15 C -0.100 4.100 16 C 0.048 3.952 17 H 0.033 0.967 18 C -0.514 4.514 19 H 0.054 0.946 20 C 0.063 3.937 21 N -0.889 5.889 22 Si 0.888 3.112 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.122 4.122 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.408 0.592 35 H 0.399 0.601 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.046 0.954 39 H 0.067 0.933 40 H 0.259 0.741 41 H 0.062 0.938 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.316 2.534 -10.795 19.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.088 4.088 3 C -0.215 4.215 4 C -0.125 4.125 5 H 0.150 0.850 6 C 0.328 3.672 7 O -0.382 6.382 8 O -0.319 6.319 9 C 0.312 3.688 10 O -0.410 6.410 11 N -0.345 5.345 12 C 0.037 3.963 13 H 0.095 0.905 14 C -0.174 4.174 15 C -0.138 4.138 16 C 0.029 3.971 17 H 0.051 0.949 18 C -0.552 4.552 19 H 0.073 0.927 20 C -0.139 4.139 21 N -0.527 5.527 22 Si 0.716 3.284 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.160 4.160 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.267 0.733 35 H 0.234 0.766 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.383 3.153 -11.314 19.355 hybrid contribution -0.580 -1.347 1.415 2.038 sum -15.964 1.805 -9.899 18.871 Atomic orbital electron populations 1.22136 0.93911 1.03566 1.01987 1.20845 0.95980 0.97206 0.94738 1.22079 1.04417 0.93645 1.01381 1.21507 0.94903 0.91511 1.04627 0.85025 1.22931 0.80371 0.91698 0.72249 1.90836 1.56605 1.46475 1.44296 1.84623 1.25710 1.36145 1.85406 1.19577 0.87676 0.78932 0.82636 1.90632 1.69163 1.45223 1.35953 1.46213 1.08237 1.56058 1.24025 1.21812 0.77439 0.97111 0.99927 0.90490 1.22845 0.99615 0.95737 0.99184 1.22451 1.00046 0.99649 0.91628 1.19471 0.94552 0.91534 0.91553 0.94880 1.21178 1.26870 1.12855 0.94299 0.92731 1.24976 0.95058 0.95062 0.98787 1.69958 1.29023 1.25742 1.27984 0.86658 0.78493 0.79996 0.83204 1.20742 1.21312 1.20009 1.22604 1.00104 0.95540 0.97753 0.92351 0.90448 0.92386 0.90146 0.89340 0.92487 0.93041 0.73271 0.76608 0.91916 0.93149 0.93567 0.91433 0.93090 0.91969 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 8.67 37.16 0.32 -0.95 16 2 C -0.07 -0.71 2.14 -90.62 -0.19 -0.90 16 3 C -0.16 -1.68 8.87 37.16 0.33 -1.35 16 4 C -0.10 -1.17 2.26 -92.92 -0.21 -1.38 16 5 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 6 C 0.49 5.49 7.43 36.01 0.27 5.76 16 7 O -0.50 -7.40 16.15 -18.75 -0.30 -7.71 16 8 O -0.51 -3.83 10.34 -39.26 -0.41 -4.23 16 9 C 0.53 8.12 6.35 -10.99 -0.07 8.05 16 10 O -0.53 -9.50 13.31 5.55 0.07 -9.42 16 11 N -0.70 -11.37 4.42 -52.72 -0.23 -11.60 16 12 C 0.14 2.62 3.25 -66.81 -0.22 2.40 16 13 H 0.08 1.47 7.56 -51.93 -0.39 1.08 16 14 C -0.14 -2.60 6.54 -25.08 -0.16 -2.77 16 15 C -0.10 -2.26 5.75 -24.74 -0.14 -2.40 16 16 C 0.05 1.16 2.71 -90.11 -0.24 0.91 16 17 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 18 C -0.51 -13.81 8.47 -34.44 -0.29 -14.11 16 19 H 0.05 1.45 7.55 -52.49 -0.40 1.05 16 20 C 0.06 1.72 5.35 -17.82 -0.10 1.62 16 21 N -0.89 -25.25 12.29 55.43 0.68 -24.57 16 22 Si 0.89 21.05 29.54 -169.99 -5.02 16.02 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 C -0.12 -2.50 6.13 -25.61 -0.16 -2.66 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.60 5.32 -51.93 -0.28 0.33 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 31 H 0.09 1.19 5.51 -51.93 -0.29 0.90 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.41 1.53 9.10 45.56 0.41 1.95 16 35 H 0.40 6.14 8.01 -40.82 -0.33 5.81 16 36 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 37 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 38 H 0.05 1.06 8.05 -51.93 -0.42 0.64 16 39 H 0.07 1.68 7.55 -51.93 -0.39 1.29 16 40 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.06 1.28 7.14 -51.93 -0.37 0.91 16 42 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 336.68 15.07 5.07 5.07 Total: -1.00 -31.53 336.68 -6.80 -38.33 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.80 Total: 5.88 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -0.87 Total: -7.77 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.45 Total: -36.17 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.63 Total: -21.37 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.53 -6.80 -38.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602970519.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.247 kcal (2) G-P(sol) polarization free energy of solvation -31.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds