Wall clock time and date at job start Tue Mar 31 2020 05:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.87180 * 2 1 4 4 O 1.20828 * 120.00065 * 265.43246 * 3 2 1 5 5 O 1.34230 * 120.00378 * 85.43858 * 3 2 1 6 6 C 1.54321 * 109.88305 * 238.98540 * 2 1 3 7 7 C 1.55157 * 103.10033 * 262.53003 * 6 2 1 8 8 C 1.55122 * 101.48763 * 324.71656 * 7 6 2 9 9 N 1.47018 * 110.01056 * 121.09480 * 2 1 3 10 10 C 1.34771 * 125.65276 * 300.58664 * 9 2 1 11 11 O 1.21289 * 119.99862 * 359.97438 * 10 9 2 12 12 C 1.50696 * 120.00378 * 179.97438 * 10 9 2 13 13 C 1.53004 * 109.47273 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.46783 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.46783 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47273 * 179.97438 * 15 14 13 17 17 H 1.08008 * 119.99891 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00109 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99933 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99637 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47623 * 59.99889 * 20 18 16 22 22 H 1.48505 * 109.46633 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47050 * 299.99689 * 20 18 16 24 24 H 1.08988 * 109.47028 * 179.56193 * 1 2 3 25 25 H 1.09000 * 109.46914 * 299.56273 * 1 2 3 26 26 H 1.09003 * 109.46987 * 59.55983 * 1 2 3 27 27 H 0.96700 * 117.00346 * 179.97438 * 5 3 2 28 28 H 1.09002 * 110.72109 * 20.98384 * 6 2 1 29 29 H 1.09003 * 110.72356 * 144.08209 * 6 2 1 30 30 H 1.09002 * 111.00409 * 82.66048 * 7 6 2 31 31 H 1.09000 * 111.00529 * 206.51165 * 7 6 2 32 32 H 1.09000 * 110.20879 * 277.95655 * 8 7 6 33 33 H 1.09001 * 110.51127 * 155.74626 * 8 7 6 34 34 H 1.09001 * 109.47411 * 299.99911 * 12 10 9 35 35 H 1.08997 * 109.47612 * 59.99562 * 12 10 9 36 36 H 1.08997 * 109.46696 * 299.99474 * 13 12 10 37 37 H 1.09001 * 109.47117 * 59.99997 * 13 12 10 38 38 H 1.08997 * 109.47062 * 299.99234 * 14 13 12 39 39 H 1.09001 * 109.47309 * 60.00099 * 14 13 12 40 40 H 1.09004 * 109.46937 * 299.99716 * 15 14 13 41 41 H 1.09004 * 109.47436 * 59.99581 * 15 14 13 42 42 H 0.96997 * 119.99810 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0423 1.4173 0.0000 4 8 2.3260 1.9571 -1.0431 5 8 2.1835 2.0800 1.1587 6 6 2.0549 -0.7478 -1.2437 7 6 2.3592 -2.1679 -0.6979 8 6 2.8619 -1.8472 0.7342 9 7 2.0331 -0.7134 1.1829 10 6 1.7783 -0.3859 2.4652 11 8 1.0793 0.5723 2.7188 12 6 2.3619 -1.2099 3.5837 13 6 1.9214 -0.6288 4.9288 14 6 2.5146 -1.4653 6.0645 15 6 2.0736 -0.8845 7.4096 16 6 2.6572 -1.7086 8.5281 17 1 3.2801 -2.5616 8.3022 18 6 2.3952 -1.3744 9.8399 19 7 1.6364 -0.3361 10.1149 20 14 3.1193 -2.3956 11.2263 21 1 4.6015 -2.3694 11.1386 22 1 2.6901 -1.8327 12.5318 23 1 2.6413 -3.7968 11.1108 24 1 -0.3633 -1.0275 -0.0079 25 1 -0.3633 0.5070 0.8939 26 1 -0.3633 0.5207 -0.8860 27 1 2.5159 2.9866 1.1083 28 1 1.2909 -0.7885 -2.0201 29 1 2.9625 -0.2774 -1.6221 30 1 1.4554 -2.7763 -0.6663 31 1 3.1358 -2.6550 -1.2876 32 1 3.9136 -1.5618 0.7090 33 1 2.7179 -2.7054 1.3906 34 1 2.0096 -2.2380 3.4997 35 1 3.4498 -1.1924 3.5187 36 1 2.2735 0.3992 5.0132 37 1 0.8335 -0.6469 4.9937 38 1 2.1629 -2.4935 5.9803 39 1 3.6025 -1.4468 5.9994 40 1 2.4249 0.1439 7.4940 41 1 0.9856 -0.9033 7.4743 42 1 1.4524 -0.1007 11.0377 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603292819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:40 Heat of formation + Delta-G solvation = -145.800151 kcal Electronic energy + Delta-G solvation = -22728.971929 eV Core-core repulsion = 19287.263688 eV Total energy + Delta-G solvation = -3441.708241 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.29295 -39.46230 -37.71335 -36.17679 -34.87331 -32.84159 -32.14573 -31.70704 -29.51375 -26.51200 -25.81511 -24.48087 -22.91338 -22.24914 -20.55758 -19.91445 -19.21551 -17.99466 -17.30890 -16.64757 -16.13888 -16.04517 -15.59235 -15.34993 -14.53777 -14.33369 -14.11477 -13.89875 -13.47162 -13.23807 -12.96759 -12.76556 -12.56461 -12.39080 -12.09752 -11.91588 -11.74496 -11.58289 -11.55554 -11.50051 -11.18175 -10.95991 -10.73821 -10.52420 -10.50008 -10.38653 -9.69498 -9.59421 -9.20278 -8.97785 -8.92297 -8.29212 -5.94134 -3.96705 1.90202 2.63247 2.74425 2.95520 3.35866 3.40269 3.42449 3.91254 4.14150 4.43948 4.49707 4.61090 4.81751 4.87851 4.98582 5.12812 5.25617 5.29791 5.32527 5.36849 5.40379 5.41622 5.47167 5.49109 5.69438 5.81085 5.88522 6.05231 6.15775 6.32610 6.35661 6.56391 6.85848 7.03222 7.21183 7.36240 7.75061 7.75826 7.91601 8.07381 8.24498 8.49109 9.10876 9.66817 11.17178 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.032893 B = 0.002998 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.033730 B = 9338.386763 C = 9786.142630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.176 3.824 3 C 0.480 3.520 4 O -0.524 6.524 5 O -0.482 6.482 6 C -0.114 4.114 7 C -0.132 4.132 8 C 0.097 3.903 9 N -0.620 5.620 10 C 0.529 3.471 11 O -0.502 6.502 12 C -0.131 4.131 13 C -0.103 4.103 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.521 4.521 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.402 0.598 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.298 -2.862 -25.416 25.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.089 3.911 3 C 0.321 3.679 4 O -0.413 6.413 5 O -0.291 6.291 6 C -0.152 4.152 7 C -0.170 4.170 8 C -0.026 4.026 9 N -0.359 5.359 10 C 0.319 3.681 11 O -0.375 6.375 12 C -0.171 4.171 13 C -0.141 4.141 14 C -0.148 4.148 15 C -0.017 4.017 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.096 0.904 25 H 0.103 0.897 26 H 0.089 0.911 27 H 0.260 0.740 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.742 -2.445 -25.243 25.372 hybrid contribution 0.682 0.120 0.725 1.002 sum 1.424 -2.325 -24.519 24.670 Atomic orbital electron populations 1.22154 0.91007 1.04038 1.04244 1.20798 0.96447 0.85622 0.88251 1.23814 0.73444 0.89396 0.81264 1.90702 1.47459 1.69432 1.33658 1.84853 1.77648 1.31853 1.34742 1.22674 1.03031 0.94899 0.94567 1.22876 1.02586 0.96308 0.95220 1.22427 0.94989 0.89404 0.95805 1.48784 1.52069 1.30677 1.04325 1.20843 0.80563 0.85133 0.81574 1.90718 1.36819 1.27544 1.82390 1.21780 1.01829 0.99705 0.93808 1.21462 1.01342 1.00125 0.91126 1.21648 0.99115 0.98146 0.95851 1.19088 0.96651 0.96178 0.89750 1.21253 1.30638 1.12909 0.91144 0.92819 1.25039 0.95330 0.95259 0.98916 1.69963 1.37748 1.26642 1.19128 0.86675 0.79502 0.80484 0.81409 1.20288 1.21328 1.20290 0.90435 0.89734 0.91133 0.73990 0.88835 0.89425 0.89979 0.89097 0.91122 0.89497 0.89268 0.89318 0.91721 0.91797 0.93519 0.93515 0.96602 0.96603 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 8.36 37.16 0.31 -1.21 16 2 C 0.18 1.80 0.80 -131.99 -0.11 1.69 16 3 C 0.48 5.93 7.11 36.01 0.26 6.19 16 4 O -0.52 -7.23 16.71 -18.75 -0.31 -7.55 16 5 O -0.48 -6.09 10.31 -46.82 -0.48 -6.57 16 6 C -0.11 -0.81 5.66 -24.90 -0.14 -0.96 16 7 C -0.13 -0.68 7.11 -24.47 -0.17 -0.85 16 8 C 0.10 0.68 6.70 -2.41 -0.02 0.67 16 9 N -0.62 -6.60 2.81 -156.93 -0.44 -7.04 16 10 C 0.53 7.34 6.99 -10.99 -0.08 7.26 16 11 O -0.50 -8.67 12.60 -17.26 -0.22 -8.89 16 12 C -0.13 -1.74 4.70 -27.88 -0.13 -1.87 16 13 C -0.10 -1.82 4.50 -26.73 -0.12 -1.94 16 14 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 15 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 16 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 17 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16 20 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H 0.08 0.64 8.14 -51.94 -0.42 0.21 16 25 H 0.08 1.06 6.72 -51.93 -0.35 0.71 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.40 3.40 9.10 45.56 0.41 3.82 16 28 H 0.09 0.55 7.83 -51.93 -0.41 0.14 16 29 H 0.09 0.69 7.38 -51.93 -0.38 0.31 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.52 7.47 -51.93 -0.39 0.13 16 34 H 0.09 1.01 7.85 -51.93 -0.41 0.60 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 37 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 LS Contribution 343.24 15.07 5.17 5.17 Total: -1.00 -35.66 343.24 -7.58 -43.24 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -6.13 Total: -1.59 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -0.89 Total: -6.82 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.30 Total: -33.86 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -1.01 Total: -23.01 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.66 -7.58 -43.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603292819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.557 kcal (2) G-P(sol) polarization free energy of solvation -35.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds