Wall clock time and date at job start Tue Mar 31 2020 05:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47199 * 2 1 4 4 C 1.53002 * 109.47109 * 240.00542 * 2 1 3 5 5 C 1.53001 * 109.47482 * 120.00348 * 2 1 3 6 6 C 1.52994 * 109.47031 * 59.99830 * 5 2 1 7 7 H 1.09002 * 115.56094 * 29.31160 * 6 5 2 8 8 C 1.53004 * 117.49775 * 243.62470 * 6 5 2 9 9 C 1.52996 * 60.00085 * 252.51075 * 8 6 5 10 10 H 1.08999 * 117.49995 * 107.48998 * 9 8 6 11 11 C 1.50704 * 117.49859 * 252.51349 * 9 8 6 12 12 O 1.21290 * 120.00039 * 68.60624 * 11 9 8 13 13 N 1.34772 * 119.99928 * 248.60629 * 11 9 8 14 14 C 1.37093 * 120.00105 * 179.97438 * 13 11 9 15 15 H 1.07995 * 120.00455 * 322.61835 * 14 13 11 16 16 C 1.38954 * 119.99707 * 142.61878 * 14 13 11 17 17 N 1.31419 * 119.99727 * 157.71647 * 16 14 13 18 18 Si 1.86795 * 120.00340 * 337.71505 * 16 14 13 19 19 H 1.48496 * 109.47344 * 95.73352 * 18 16 14 20 20 H 1.48502 * 109.47263 * 215.73219 * 18 16 14 21 21 H 1.48504 * 109.47091 * 335.72695 * 18 16 14 22 22 C 1.46508 * 120.00048 * 359.97438 * 13 11 9 23 23 C 1.50697 * 109.47101 * 84.13103 * 22 13 11 24 24 O 1.20833 * 119.99946 * 0.02562 * 23 22 13 25 25 O 1.34228 * 120.00076 * 180.02562 * 23 22 13 26 26 H 1.09001 * 109.46761 * 299.99997 * 1 2 3 27 27 H 1.09000 * 109.47182 * 59.99634 * 1 2 3 28 28 H 1.08997 * 109.47060 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47159 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47353 * 300.00261 * 3 2 1 31 31 H 1.08995 * 109.46842 * 60.00158 * 3 2 1 32 32 H 1.09000 * 109.46524 * 299.99599 * 4 2 1 33 33 H 1.09000 * 109.47243 * 59.99861 * 4 2 1 34 34 H 1.08997 * 109.47011 * 180.02562 * 4 2 1 35 35 H 1.09006 * 109.46451 * 299.99863 * 5 2 1 36 36 H 1.08999 * 109.47115 * 179.97438 * 5 2 1 37 37 H 1.09002 * 117.49807 * 145.02216 * 8 6 5 38 38 H 1.08998 * 117.49973 * 0.02562 * 8 6 5 39 39 H 0.96997 * 120.00000 * 180.02562 * 17 16 14 40 40 H 1.08991 * 109.47106 * 204.13285 * 22 13 11 41 41 H 1.08999 * 109.46590 * 324.13311 * 22 13 11 42 42 H 0.96699 * 117.00016 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.5301 -2.1637 1.2491 7 1 1.3621 -2.6032 0.2658 8 6 0.5861 -2.5793 2.3793 9 6 2.0285 -3.0893 2.3608 10 1 2.7197 -2.6706 3.0922 11 6 2.2496 -4.5388 2.0125 12 8 2.0329 -4.9316 0.8856 13 7 2.6883 -5.3985 2.9531 14 6 2.8890 -6.7172 2.6364 15 1 2.2148 -7.2182 1.9577 16 6 3.9600 -7.4091 3.1888 17 7 3.9280 -8.7209 3.2605 18 14 5.4452 -6.4747 3.8294 19 1 5.3045 -6.2646 5.2927 20 1 6.6775 -7.2577 3.5580 21 1 5.5344 -5.1589 3.1467 22 6 2.9507 -4.9239 4.3141 23 6 1.6650 -4.9165 5.1001 24 8 0.6351 -5.2717 4.5773 25 8 1.6637 -4.5153 6.3811 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7488 -1.2493 33 1 1.6766 -0.2073 -2.1393 34 1 3.1299 -0.7215 -1.2491 35 1 1.6767 -0.2074 2.1392 36 1 3.1301 -0.7217 1.2489 37 1 -0.2028 -3.2922 2.1395 38 1 0.3281 -1.8250 3.1225 39 1 4.6754 -9.2039 3.6464 40 1 3.6684 -5.5863 4.7978 41 1 3.3581 -3.9137 4.2743 42 1 0.8150 -4.5282 6.8443 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603337911.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:17 Heat of formation + Delta-G solvation = -101.922080 kcal Electronic energy + Delta-G solvation = -23413.221529 eV Core-core repulsion = 19973.415984 eV Total energy + Delta-G solvation = -3439.805545 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.05534 -39.13726 -37.88446 -35.81941 -35.34486 -34.57349 -32.13258 -28.07459 -27.73574 -27.29099 -27.21560 -25.63061 -22.67846 -21.71316 -20.87408 -18.71195 -18.52111 -17.73814 -17.30898 -16.58613 -16.09638 -15.69864 -14.92941 -14.78027 -14.60138 -14.45161 -13.85850 -13.71986 -13.12380 -13.06114 -12.76514 -12.56803 -12.47730 -12.22245 -12.19194 -11.79060 -11.69472 -11.48144 -11.41177 -11.11061 -10.99851 -10.84419 -10.73235 -10.63632 -10.35126 -10.11083 -10.01025 -9.80807 -9.60985 -9.17806 -8.61450 -7.93093 -6.45968 -4.04246 2.71011 2.93405 3.10281 3.17902 3.23187 3.58658 4.04331 4.21101 4.31384 4.68696 4.79555 4.85648 4.97301 5.17648 5.22847 5.27082 5.37144 5.48445 5.57363 5.59269 5.61510 5.67610 5.69185 5.78070 5.84387 5.89785 5.91166 5.91519 6.00362 6.09115 6.10504 6.28234 6.32333 6.39496 6.42394 6.68380 6.89091 7.43608 8.21559 8.33835 8.44065 8.87919 9.21338 9.65674 10.66044 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.019536 B = 0.005140 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.908396 B = 5446.311891 C = 5997.109599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.066 4.066 3 C -0.140 4.140 4 C -0.146 4.146 5 C -0.078 4.078 6 C -0.120 4.120 7 H 0.120 0.880 8 C -0.149 4.149 9 C -0.188 4.188 10 H 0.110 0.890 11 C 0.512 3.488 12 O -0.549 6.549 13 N -0.449 5.449 14 C -0.314 4.314 15 H 0.108 0.892 16 C 0.059 3.941 17 N -0.857 5.857 18 Si 0.860 3.140 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.258 1.258 22 C 0.101 3.899 23 C 0.457 3.543 24 O -0.490 6.490 25 O -0.527 6.527 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.275 0.725 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.246 17.889 1.836 18.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.066 4.066 3 C -0.198 4.198 4 C -0.203 4.203 5 C -0.115 4.115 6 C -0.138 4.138 7 H 0.138 0.862 8 C -0.186 4.186 9 C -0.210 4.210 10 H 0.128 0.872 11 C 0.301 3.699 12 O -0.429 6.429 13 N -0.171 5.171 14 C -0.441 4.441 15 H 0.126 0.874 16 C -0.147 4.147 17 N -0.492 5.492 18 Si 0.686 3.314 19 H -0.198 1.198 20 H -0.206 1.206 21 H -0.182 1.182 22 C -0.025 4.025 23 C 0.296 3.704 24 O -0.375 6.375 25 O -0.339 6.339 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.129 0.871 41 H 0.122 0.878 42 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -2.177 17.363 0.915 17.523 hybrid contribution 0.353 0.146 1.048 1.115 sum -1.823 17.509 1.963 17.713 Atomic orbital electron populations 1.21874 0.94569 1.02325 1.00998 1.20498 0.95792 0.94868 0.95458 1.21872 1.00889 0.95619 1.01399 1.21958 1.01022 1.00972 0.96343 1.21267 1.00336 0.92725 0.97221 1.22430 1.01883 0.94077 0.95433 0.86178 1.22982 0.92033 1.02550 1.01055 1.22446 0.99476 0.94817 1.04223 0.87246 1.19298 0.80646 0.85187 0.84764 1.90554 1.53086 1.78448 1.20803 1.43288 1.60797 1.09404 1.03622 1.19054 1.11823 0.82864 1.30324 0.87443 1.25381 0.97514 0.95273 0.96554 1.69765 1.31363 1.06686 1.41413 0.87195 0.83918 0.81632 0.78652 1.19797 1.20577 1.18187 1.21572 0.92320 1.02681 0.85950 1.24593 0.92811 0.73188 0.79770 1.90704 1.34363 1.42374 1.70085 1.84577 1.41742 1.80476 1.27098 0.92982 0.93216 0.91937 0.92773 0.92847 0.92894 0.91657 0.93114 0.92722 0.91917 0.91546 0.88487 0.88914 0.91420 0.87060 0.87841 0.74222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.23 37.16 0.31 -1.14 16 2 C -0.07 -0.70 0.80 -154.51 -0.12 -0.82 16 3 C -0.14 -1.26 8.47 37.16 0.31 -0.94 16 4 C -0.15 -1.65 8.23 37.16 0.31 -1.35 16 5 C -0.08 -0.92 4.55 -26.73 -0.12 -1.05 16 6 C -0.12 -1.82 3.77 -90.62 -0.34 -2.16 16 7 H 0.12 2.06 5.58 -51.93 -0.29 1.77 16 8 C -0.15 -2.31 9.88 -26.73 -0.26 -2.57 16 9 C -0.19 -3.34 4.92 -91.77 -0.45 -3.80 16 10 H 0.11 1.68 6.53 -51.93 -0.34 1.34 16 11 C 0.51 12.17 7.20 -10.99 -0.08 12.09 16 12 O -0.55 -15.03 16.12 5.55 0.09 -14.94 16 13 N -0.45 -11.05 1.73 -116.10 -0.20 -11.25 16 14 C -0.31 -8.99 9.36 -14.93 -0.14 -9.13 16 15 H 0.11 3.51 7.91 -52.49 -0.42 3.09 16 16 C 0.06 1.62 5.27 -17.46 -0.09 1.53 16 17 N -0.86 -24.68 13.96 55.50 0.77 -23.91 16 18 Si 0.86 19.49 25.03 -169.99 -4.25 15.23 16 19 H -0.27 -5.63 6.69 56.52 0.38 -5.25 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 22 C 0.10 2.04 4.38 -5.19 -0.02 2.01 16 23 C 0.46 8.74 8.23 36.00 0.30 9.04 16 24 O -0.49 -11.02 17.05 -18.76 -0.32 -11.34 16 25 O -0.53 -7.64 13.42 -39.25 -0.53 -8.17 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.72 7.20 -51.93 -0.37 0.34 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.85 6.14 -51.93 -0.32 0.53 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.67 7.88 -51.93 -0.41 0.26 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 38 H 0.09 1.19 8.03 -51.93 -0.42 0.78 16 39 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.11 2.32 3.56 -51.93 -0.19 2.13 16 41 H 0.10 1.68 6.26 -51.93 -0.33 1.36 16 42 H 0.40 3.94 9.10 45.56 0.41 4.36 16 LS Contribution 341.29 15.07 5.14 5.14 Total: -1.00 -33.64 341.29 -5.33 -38.96 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -5.62 Total: 8.54 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -0.41 Total: 1.72 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.57 Total: -35.15 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -0.76 Total: -34.45 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.25 Total: 15.23 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.64 -5.33 -38.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603337911.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.957 kcal (2) G-P(sol) polarization free energy of solvation -33.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds