Wall clock time and date at job start Tue Mar 31 2020 05:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46741 * 2 1 4 4 C 1.53000 * 109.47508 * 303.88932 * 3 2 1 5 5 C 1.52999 * 109.46776 * 299.99917 * 4 3 2 6 6 C 1.50704 * 109.47113 * 183.88730 * 3 2 1 7 7 O 1.20824 * 119.99573 * 0.02562 * 6 3 2 8 8 O 1.34229 * 120.00434 * 180.02562 * 6 3 2 9 9 C 1.50704 * 109.47454 * 63.89070 * 3 2 1 10 10 O 1.21281 * 119.99914 * 244.90617 * 9 3 2 11 11 N 1.34778 * 120.00120 * 64.90118 * 9 3 2 12 12 C 1.46494 * 120.00105 * 185.03098 * 11 9 3 13 13 C 1.52998 * 109.47164 * 184.77972 * 12 11 9 14 14 C 1.50702 * 115.55241 * 294.78744 * 13 12 11 15 15 H 1.07991 * 120.00038 * 95.16526 * 14 13 12 16 16 C 1.37873 * 119.99639 * 274.89833 * 14 13 12 17 17 N 1.31520 * 119.99978 * 355.41616 * 16 14 13 18 18 Si 1.86799 * 120.00126 * 175.41823 * 16 14 13 19 19 H 1.48495 * 109.47140 * 59.99774 * 18 16 14 20 20 H 1.48500 * 109.47483 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47006 * 299.99666 * 18 16 14 22 22 C 1.52999 * 117.49996 * 80.45414 * 13 12 11 23 23 C 1.52999 * 117.50061 * 149.11340 * 13 12 11 24 24 H 1.09004 * 109.47333 * 299.99863 * 1 2 3 25 25 H 1.08996 * 109.47442 * 60.00325 * 1 2 3 26 26 H 1.08998 * 109.46908 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46810 * 240.00087 * 2 1 3 28 28 H 1.08992 * 109.46976 * 119.99826 * 2 1 3 29 29 H 1.08995 * 109.47373 * 59.99888 * 4 3 2 30 30 H 1.09009 * 109.47307 * 180.02562 * 4 3 2 31 31 H 1.08998 * 109.47165 * 60.00058 * 5 4 3 32 32 H 1.09005 * 109.47075 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.47822 * 299.99869 * 5 4 3 34 34 H 0.96695 * 117.00075 * 180.02562 * 8 6 3 35 35 H 0.96998 * 119.99457 * 5.02831 * 11 9 3 36 36 H 1.08999 * 109.47309 * 64.77707 * 12 11 9 37 37 H 1.09007 * 109.46888 * 304.77736 * 12 11 9 38 38 H 0.96999 * 119.99834 * 185.00385 * 17 16 14 39 39 H 1.08999 * 117.50132 * 215.00309 * 22 13 12 40 40 H 1.09004 * 117.50217 * 0.02579 * 22 13 12 41 41 H 1.09006 * 117.49751 * 359.97438 * 23 13 12 42 42 H 1.08998 * 117.50172 * 144.97585 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4516 2.1915 -1.1974 5 6 1.8802 1.4990 -2.4927 6 6 3.5439 1.4437 -0.0963 7 8 4.1460 0.3980 -0.1590 8 8 4.2145 2.6063 -0.1124 9 6 1.6178 2.1246 1.2758 10 8 0.8443 3.0579 1.2372 11 7 2.0999 1.6974 2.4597 12 6 1.6066 2.2865 3.7070 13 6 2.3945 1.7150 4.8875 14 6 2.2141 0.2397 5.1362 15 1 2.9185 -0.4675 4.7241 16 6 1.1528 -0.2067 5.8946 17 7 0.3500 0.6580 6.4756 18 14 0.8550 -2.0397 6.0970 19 1 2.0405 -2.6663 6.7350 20 1 -0.3392 -2.2558 6.9529 21 1 0.6273 -2.6543 4.7645 22 6 3.7715 2.3166 5.1753 23 6 2.5946 2.6177 6.1066 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 0.3639 2.1906 -1.1278 30 1 1.8153 3.2191 -1.1976 31 1 1.5169 0.4714 -2.4927 32 1 1.4607 2.0324 -3.3458 33 1 2.9680 1.4998 -2.5624 34 1 5.1781 2.5564 -0.1757 35 1 2.7734 0.9999 2.4858 36 1 0.5494 2.0501 3.8273 37 1 1.7356 3.3684 3.6738 38 1 -0.3523 0.3459 7.0675 39 1 4.5469 1.6454 5.5445 40 1 4.1160 3.1199 4.5239 41 1 2.1652 3.6188 6.0674 42 1 2.5953 2.1445 7.0885 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603522773.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:35 Heat of formation + Delta-G solvation = -122.811436 kcal Electronic energy + Delta-G solvation = -23908.339859 eV Core-core repulsion = 20467.628484 eV Total energy + Delta-G solvation = -3440.711375 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.11261 -39.07419 -36.95240 -36.36132 -35.63485 -33.48521 -31.99273 -31.17985 -28.78821 -26.21435 -25.12027 -23.69284 -22.95644 -21.37997 -20.87914 -19.54882 -18.88592 -17.99570 -17.36917 -16.54432 -15.99022 -15.72639 -15.23280 -14.84813 -14.64810 -14.39435 -13.79944 -13.75555 -13.18745 -13.05631 -12.87840 -12.67279 -12.12179 -11.96535 -11.83136 -11.71164 -11.60769 -11.58330 -11.29012 -11.01459 -10.98012 -10.91099 -10.70106 -10.56610 -10.37253 -10.26252 -9.65667 -9.34954 -9.08389 -8.52689 -8.34644 -8.16473 -6.10250 -4.20359 2.07724 2.70337 3.16626 3.25378 3.31198 3.33206 3.58761 4.33050 4.57613 4.62478 4.93348 5.14518 5.15333 5.17524 5.28455 5.33589 5.37851 5.49582 5.61646 5.73753 5.84860 5.97936 6.00538 6.05750 6.13215 6.23314 6.29743 6.40275 6.42595 6.45123 6.50913 6.67474 6.79533 7.08546 7.14812 7.33819 7.49606 7.78326 7.80068 8.11157 8.30551 8.64397 8.81234 9.47094 10.96752 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.017869 B = 0.005845 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.546429 B = 4789.319462 C = 5319.019217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.104 4.104 3 C -0.068 4.068 4 C -0.100 4.100 5 C -0.158 4.158 6 C 0.493 3.507 7 O -0.504 6.504 8 O -0.507 6.507 9 C 0.523 3.477 10 O -0.538 6.538 11 N -0.698 5.698 12 C 0.163 3.837 13 C 0.022 3.978 14 C -0.501 4.501 15 H 0.059 0.941 16 C 0.075 3.925 17 N -0.875 5.875 18 Si 0.889 3.111 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.212 4.212 23 C -0.140 4.140 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.410 0.590 35 H 0.400 0.600 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.262 0.738 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.686 1.387 -13.869 14.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.142 4.142 3 C -0.073 4.073 4 C -0.138 4.138 5 C -0.215 4.215 6 C 0.334 3.666 7 O -0.391 6.391 8 O -0.318 6.318 9 C 0.306 3.694 10 O -0.416 6.416 11 N -0.346 5.346 12 C 0.041 3.959 13 C 0.021 3.979 14 C -0.539 4.539 15 H 0.077 0.923 16 C -0.129 4.129 17 N -0.510 5.510 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.249 4.249 23 C -0.178 4.178 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.268 0.732 35 H 0.234 0.766 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.633 1.798 -13.764 14.128 hybrid contribution 0.854 -1.381 0.330 1.657 sum 3.487 0.416 -13.434 13.885 Atomic orbital electron populations 1.21866 0.94154 1.02424 1.02816 1.21523 0.96983 0.91148 1.04529 1.20984 0.88128 1.00442 0.97749 1.21458 1.02553 0.99253 0.90520 1.21923 1.01070 1.01334 0.97189 1.22995 0.90737 0.81166 0.71676 1.90729 1.70035 1.33105 1.45273 1.84579 1.26743 1.35520 1.85000 1.19658 0.81912 0.83652 0.84174 1.90675 1.36035 1.28066 1.86799 1.46031 1.42359 1.40442 1.05793 1.21064 0.99063 0.94464 0.81356 1.19043 0.91951 0.94463 0.92398 1.20307 1.10283 0.89171 1.34108 0.92278 1.24971 0.95350 0.97441 0.95176 1.69979 1.18537 1.33649 1.28874 0.86705 0.77726 0.85613 0.78272 1.20261 1.21233 1.20032 1.23024 0.93237 1.03114 1.05510 1.22461 1.00336 0.98512 0.96471 0.91830 0.91997 0.91809 0.89891 0.90052 0.89018 0.90099 0.91797 0.91765 0.93216 0.73171 0.76560 0.91195 0.93840 0.92779 0.90373 0.91734 0.91777 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.26 37.16 0.34 -1.68 16 2 C -0.10 -1.43 3.82 -26.73 -0.10 -1.53 16 3 C -0.07 -1.00 0.40 -156.81 -0.06 -1.06 16 4 C -0.10 -1.25 3.78 -26.73 -0.10 -1.36 16 5 C -0.16 -1.58 9.31 37.16 0.35 -1.23 16 6 C 0.49 7.01 5.19 36.01 0.19 7.20 16 7 O -0.50 -7.95 16.70 -18.75 -0.31 -8.27 16 8 O -0.51 -6.15 13.24 -39.25 -0.52 -6.67 16 9 C 0.52 9.54 5.33 -10.98 -0.06 9.49 16 10 O -0.54 -11.22 15.97 5.56 0.09 -11.14 16 11 N -0.70 -13.59 5.27 -60.30 -0.32 -13.90 16 12 C 0.16 3.64 5.53 -4.05 -0.02 3.62 16 13 C 0.02 0.52 1.47 -155.66 -0.23 0.29 16 14 C -0.50 -12.81 8.60 -34.44 -0.30 -13.11 16 15 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 16 C 0.07 1.96 5.43 -17.82 -0.10 1.87 16 17 N -0.87 -23.88 12.65 55.43 0.70 -23.18 16 18 Si 0.89 20.43 29.54 -169.99 -5.02 15.40 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 C -0.21 -4.43 9.96 -26.70 -0.27 -4.70 16 23 C -0.14 -3.18 9.14 -26.70 -0.24 -3.43 16 24 H 0.06 0.99 7.34 -51.93 -0.38 0.61 16 25 H 0.06 0.70 6.36 -51.93 -0.33 0.37 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 1.01 6.49 -51.93 -0.34 0.67 16 28 H 0.08 1.23 7.95 -51.93 -0.41 0.82 16 29 H 0.09 1.16 6.26 -51.93 -0.33 0.83 16 30 H 0.08 1.06 8.11 -51.92 -0.42 0.64 16 31 H 0.06 0.60 6.52 -51.93 -0.34 0.26 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.51 7.22 -51.93 -0.37 0.14 16 34 H 0.41 3.01 9.10 45.56 0.41 3.43 16 35 H 0.40 7.61 7.86 -40.82 -0.32 7.28 16 36 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 37 H 0.04 0.96 8.05 -51.92 -0.42 0.54 16 38 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 39 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 42 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 346.30 15.07 5.22 5.22 Total: -1.00 -29.94 346.30 -6.52 -36.45 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -5.75 Total: 11.72 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -0.60 Total: -5.64 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.38 Total: -37.09 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.74 Total: -26.07 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.94 -6.52 -36.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603522773.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.359 kcal (2) G-P(sol) polarization free energy of solvation -29.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds