Wall clock time and date at job start Tue Mar 31 2020 05:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47222 * 2 1 4 4 C 1.50706 * 109.49671 * 59.99706 * 3 2 1 5 5 O 1.20825 * 119.99859 * 119.99612 * 4 3 2 6 6 O 1.34224 * 120.00295 * 300.00571 * 4 3 2 7 7 C 1.53038 * 109.49810 * 180.02562 * 3 2 1 8 8 C 1.53040 * 109.53871 * 58.61997 * 7 3 2 9 9 C 1.53191 * 109.31400 * 61.36392 * 8 7 3 10 10 N 1.46936 * 108.77438 * 305.36831 * 9 8 7 11 11 C 1.34777 * 120.62933 * 233.60991 * 10 9 8 12 12 O 1.21278 * 120.00321 * 180.02562 * 11 10 9 13 13 C 1.50704 * 120.00004 * 359.97438 * 11 10 9 14 14 C 1.52996 * 109.47091 * 180.02562 * 13 11 10 15 15 C 1.50704 * 109.47091 * 179.97438 * 14 13 11 16 16 H 1.08005 * 119.99810 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00093 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00103 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00175 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47104 * 90.00051 * 19 17 15 21 21 H 1.48505 * 109.47173 * 210.00416 * 19 17 15 22 22 H 1.48501 * 109.47092 * 330.00225 * 19 17 15 23 23 C 1.46928 * 118.76552 * 53.58498 * 10 9 8 24 24 H 1.08999 * 109.47590 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47524 * 299.99854 * 1 2 3 26 26 H 1.09001 * 109.47334 * 59.99838 * 1 2 3 27 27 H 1.08994 * 109.47019 * 240.00144 * 2 1 3 28 28 H 1.09001 * 109.47334 * 120.00162 * 2 1 3 29 29 H 0.96700 * 117.00196 * 179.97438 * 6 4 3 30 30 H 1.09000 * 109.45917 * 178.64095 * 7 3 2 31 31 H 1.09003 * 109.45941 * 298.61061 * 7 3 2 32 32 H 1.08998 * 109.49864 * 181.31414 * 8 7 3 33 33 H 1.08998 * 109.49829 * 301.38167 * 8 7 3 34 34 H 1.09002 * 109.58392 * 65.14926 * 9 8 7 35 35 H 1.09001 * 109.59224 * 185.58153 * 9 8 7 36 36 H 1.09005 * 109.46852 * 300.00356 * 13 11 10 37 37 H 1.08998 * 109.46863 * 59.99891 * 13 11 10 38 38 H 1.08992 * 109.47231 * 299.99911 * 14 13 11 39 39 H 1.08994 * 109.47090 * 60.00347 * 14 13 11 40 40 H 0.97000 * 120.00199 * 179.97438 * 18 17 15 41 41 H 1.08996 * 109.61606 * 186.64148 * 23 10 9 42 42 H 1.09001 * 109.56169 * 66.21669 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5379 2.1535 1.2303 5 8 2.3233 2.6128 2.0254 6 8 0.2183 2.2765 1.4429 7 6 3.5704 1.4432 -0.0006 8 6 4.0820 0.6926 -1.2323 9 6 3.5977 1.4065 -2.4982 10 7 2.1356 1.5390 -2.4363 11 6 1.3625 1.0946 -3.4470 12 8 0.1569 1.2101 -3.3843 13 6 1.9963 0.4552 -4.6555 14 6 0.9052 0.0435 -5.6459 15 6 1.5390 -0.5953 -6.8547 16 1 2.6127 -0.6979 -6.9107 17 6 0.7482 -1.0498 -7.8886 18 7 -0.5592 -0.9254 -7.8201 19 14 1.5338 -1.8424 -9.3866 20 1 1.6550 -3.3059 -9.1660 21 1 0.6880 -1.5901 -10.5809 22 1 2.8829 -1.2612 -9.6039 23 6 1.5318 2.1645 -1.2519 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 -0.0556 2.7402 2.2460 30 1 3.9330 2.4708 -0.0250 31 1 3.9341 0.9511 0.9014 32 1 5.1718 0.6733 -1.2199 33 1 3.6999 -0.3281 -1.2210 34 1 4.0520 2.3957 -2.5563 35 1 3.8749 0.8226 -3.3759 36 1 2.6695 1.1676 -5.1324 37 1 2.5590 -0.4260 -4.3472 38 1 0.2318 -0.6687 -5.1692 39 1 0.3430 0.9249 -5.9541 40 1 -1.1156 -1.2448 -8.5477 41 1 0.4465 2.0805 -1.3069 42 1 1.8172 3.2156 -1.2087 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603593961.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:32 Heat of formation + Delta-G solvation = -143.818942 kcal Electronic energy + Delta-G solvation = -23541.656398 eV Core-core repulsion = 20100.034069 eV Total energy + Delta-G solvation = -3441.622329 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.29587 -39.63330 -37.54989 -36.38769 -34.33921 -33.46976 -32.21213 -31.06985 -29.77034 -26.47127 -25.30451 -24.58135 -23.24009 -22.25248 -21.44778 -19.42349 -18.23293 -18.17718 -17.27199 -16.68188 -16.16933 -15.85099 -15.28563 -14.99016 -14.68964 -14.44049 -14.29225 -14.00653 -13.59644 -13.30527 -13.14018 -12.83196 -12.40921 -12.17836 -12.04021 -11.94226 -11.79584 -11.31680 -11.26356 -11.01322 -10.98823 -10.93936 -10.80366 -10.61804 -10.58182 -10.35947 -9.97349 -9.62304 -9.19282 -9.01394 -8.49431 -8.32188 -5.96749 -4.01240 1.94997 2.72804 3.17431 3.26644 3.32725 3.39239 3.41598 4.27117 4.46319 4.47044 4.54893 4.81265 4.87658 5.06556 5.16865 5.26891 5.28298 5.38355 5.42589 5.49774 5.57890 5.61979 5.68960 5.71452 5.83405 5.90759 6.00163 6.08571 6.18046 6.18969 6.25462 6.27151 6.49721 6.63724 6.87498 7.67672 7.69063 7.73559 7.85163 8.06216 8.37260 8.69924 9.07124 9.62449 11.14148 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.031180 B = 0.003848 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.784075 B = 7274.585764 C = 7727.089925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.109 4.109 3 C -0.064 4.064 4 C 0.494 3.506 5 O -0.517 6.517 6 O -0.502 6.502 7 C -0.099 4.099 8 C -0.137 4.137 9 C 0.105 3.895 10 N -0.621 5.621 11 C 0.514 3.486 12 O -0.528 6.528 13 C -0.128 4.128 14 C 0.037 3.963 15 C -0.527 4.527 16 H 0.055 0.945 17 C 0.059 3.941 18 N -0.889 5.889 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.123 3.877 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.403 0.597 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.261 0.739 41 H 0.110 0.890 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.856 4.972 18.436 20.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.146 4.146 3 C -0.066 4.066 4 C 0.336 3.664 5 O -0.405 6.405 6 O -0.314 6.314 7 C -0.136 4.136 8 C -0.176 4.176 9 C -0.018 4.018 10 N -0.357 5.357 11 C 0.305 3.695 12 O -0.403 6.403 13 C -0.168 4.168 14 C 0.000 4.000 15 C -0.565 4.565 16 H 0.074 0.926 17 C -0.143 4.143 18 N -0.528 5.528 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.001 4.001 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.262 0.738 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.128 0.872 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.350 4.917 18.192 20.227 hybrid contribution 0.340 -0.092 -0.170 0.391 sum 7.690 4.824 18.022 20.179 Atomic orbital electron populations 1.22136 0.94290 1.02191 1.04044 1.21565 0.97574 0.92414 1.03046 1.21040 0.97335 0.97212 0.91007 1.23321 0.79980 0.76085 0.86997 1.90700 1.57011 1.46012 1.46748 1.84727 1.26020 1.72249 1.48385 1.21458 0.91105 1.02040 0.99013 1.22026 1.01220 1.00290 0.94014 1.21773 0.80054 1.00991 0.99027 1.48237 1.06835 1.61977 1.18676 1.21611 0.87243 0.76807 0.83832 1.90661 1.14665 1.55493 1.79487 1.21891 1.01922 0.99721 0.93238 1.18904 0.92220 0.97257 0.91651 1.21211 0.93092 1.39459 1.02781 0.92638 1.25014 0.94796 0.96052 0.98449 1.69995 1.03565 1.46571 1.32657 0.86606 0.79208 0.79664 0.82555 1.20682 1.21233 1.19884 1.21472 1.01129 0.94967 0.82537 0.92703 0.90852 0.90987 0.89716 0.91833 0.73773 0.90864 0.90801 0.90035 0.90619 0.91488 0.88548 0.90234 0.90230 0.95815 0.95831 0.92952 0.87235 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 9.06 37.16 0.34 -1.73 16 2 C -0.11 -1.21 4.49 -26.73 -0.12 -1.33 16 3 C -0.06 -0.70 0.51 -155.54 -0.08 -0.78 16 4 C 0.49 5.41 6.86 36.01 0.25 5.66 16 5 O -0.52 -6.76 16.73 -18.75 -0.31 -7.08 16 6 O -0.50 -4.42 10.28 -39.24 -0.40 -4.82 16 7 C -0.10 -0.95 4.00 -26.69 -0.11 -1.05 16 8 C -0.14 -1.20 5.74 -26.61 -0.15 -1.36 16 9 C 0.10 1.10 6.34 -3.71 -0.02 1.08 16 10 N -0.62 -8.64 2.41 -172.76 -0.42 -9.06 16 11 C 0.51 9.56 7.70 -10.98 -0.08 9.48 16 12 O -0.53 -11.90 15.06 5.56 0.08 -11.81 16 13 C -0.13 -2.51 3.99 -27.88 -0.11 -2.62 16 14 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 15 C -0.53 -14.69 9.11 -34.44 -0.31 -15.01 16 16 H 0.06 1.45 7.74 -52.48 -0.41 1.05 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 19 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 C 0.12 1.56 4.84 -3.71 -0.02 1.54 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.80 5.33 -51.93 -0.28 0.53 16 26 H 0.07 1.07 5.98 -51.93 -0.31 0.76 16 27 H 0.08 1.03 5.98 -51.93 -0.31 0.72 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.40 1.78 9.10 45.56 0.41 2.19 16 30 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 31 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.70 6.34 -51.93 -0.33 0.37 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 1.01 5.93 -51.93 -0.31 0.70 16 36 H 0.08 1.43 7.94 -51.93 -0.41 1.02 16 37 H 0.08 1.41 7.69 -51.93 -0.40 1.01 16 38 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 39 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.11 1.61 5.03 -51.93 -0.26 1.35 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 329.46 15.07 4.96 4.96 Total: -1.00 -34.58 329.46 -6.54 -41.12 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -5.53 Total: 0.39 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -0.64 Total: -3.68 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.32 Total: -35.47 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.63 Total: -23.71 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.58 -6.54 -41.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603593961.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.697 kcal (2) G-P(sol) polarization free energy of solvation -34.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds