Wall clock time and date at job start Tue Mar 31 2020 05:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.50704 * 109.49661 * 299.93398 * 3 2 1 5 5 O 1.20831 * 119.99895 * 240.00513 * 4 3 2 6 6 O 1.34221 * 120.00103 * 60.00239 * 4 3 2 7 7 C 1.53049 * 109.49519 * 179.83818 * 3 2 1 8 8 C 1.53034 * 109.53429 * 301.41147 * 7 3 2 9 9 C 1.53192 * 109.31484 * 298.63369 * 8 7 3 10 10 N 1.46923 * 108.77536 * 54.63819 * 9 8 7 11 11 C 1.34778 * 120.62982 * 126.41330 * 10 9 8 12 12 O 1.21283 * 119.99903 * 179.97438 * 11 10 9 13 13 C 1.50693 * 120.00021 * 359.97438 * 11 10 9 14 14 C 1.53001 * 109.47098 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.47271 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99436 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00221 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00270 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99884 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47005 * 89.99771 * 19 17 15 21 21 H 1.48497 * 109.47187 * 209.99808 * 19 17 15 22 22 H 1.48494 * 109.47207 * 330.00045 * 19 17 15 23 23 C 1.46923 * 118.73808 * 306.39418 * 10 9 8 24 24 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 26 26 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 28 28 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 29 29 H 0.96698 * 116.99814 * 180.02562 * 6 4 3 30 30 H 1.09000 * 109.45843 * 61.43317 * 7 3 2 31 31 H 1.08998 * 109.45613 * 181.39015 * 7 3 2 32 32 H 1.09010 * 109.49391 * 178.68265 * 8 7 3 33 33 H 1.08994 * 109.50014 * 58.58947 * 8 7 3 34 34 H 1.09002 * 109.58407 * 294.85151 * 9 8 7 35 35 H 1.09003 * 109.69939 * 174.49760 * 9 8 7 36 36 H 1.09000 * 109.47325 * 300.00426 * 13 11 10 37 37 H 1.09000 * 109.47204 * 60.00319 * 13 11 10 38 38 H 1.09000 * 109.46926 * 300.00035 * 14 13 11 39 39 H 1.08999 * 109.47004 * 60.00606 * 14 13 11 40 40 H 0.96997 * 119.99896 * 180.02562 * 18 17 15 41 41 H 1.09003 * 109.58847 * 293.81511 * 23 10 9 42 42 H 1.09002 * 109.70387 * 173.46433 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5393 2.1530 -1.2311 5 8 2.3255 2.6119 -2.0256 6 8 0.2199 2.2760 -1.4451 7 6 3.5704 1.4432 0.0041 8 6 4.0792 0.6929 1.2370 9 6 3.5920 1.4072 2.5016 10 7 2.1302 1.5396 2.4365 11 6 1.3549 1.0959 3.4458 12 8 0.1494 1.2115 3.3803 13 6 1.9859 0.4563 4.6555 14 6 0.8925 0.0444 5.6434 15 6 1.5236 -0.5947 6.8535 16 1 2.5972 -0.6965 6.9123 17 6 0.7305 -1.0485 7.8860 18 7 1.2812 -1.6067 8.9418 19 14 -1.1264 -0.8717 7.7845 20 1 -1.7040 -2.0788 7.1407 21 1 -1.6851 -0.7250 9.1525 22 1 -1.4661 0.3291 6.9796 23 6 1.5297 2.1653 1.2505 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 -0.0531 2.7393 -2.2487 30 1 3.9362 0.9510 -0.8971 31 1 3.9330 2.4708 0.0290 32 1 5.1691 0.6735 1.2271 33 1 3.6967 -0.3277 1.2254 34 1 4.0463 2.3963 2.5605 35 1 3.8675 0.8255 3.3814 36 1 2.5486 -0.4253 4.3485 37 1 2.6586 1.1683 5.1337 38 1 0.3296 0.9258 5.9504 39 1 0.2202 -0.6678 5.1650 40 1 0.7231 -1.9262 9.6680 41 1 1.8157 3.2162 1.2075 42 1 0.4439 2.0839 1.3021 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603593962.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:36 Heat of formation + Delta-G solvation = -141.125441 kcal Electronic energy + Delta-G solvation = -23613.578922 eV Core-core repulsion = 20172.073392 eV Total energy + Delta-G solvation = -3441.505530 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.35859 -39.72944 -37.65630 -36.43957 -34.42394 -33.49949 -32.28472 -31.34144 -29.89517 -26.82598 -25.38167 -24.66344 -23.29230 -22.30065 -21.14524 -19.46904 -18.32849 -18.24446 -17.45166 -16.80220 -16.32023 -16.11506 -15.35627 -15.10132 -14.77504 -14.42043 -14.11065 -14.02283 -13.66208 -13.41305 -13.25365 -12.87294 -12.59509 -12.51157 -12.18655 -12.00312 -11.87586 -11.47606 -11.34063 -11.12068 -11.05160 -10.99154 -10.86069 -10.66951 -10.42409 -10.14222 -10.04245 -9.79433 -9.25991 -9.16525 -8.59221 -8.51022 -6.04016 -4.02864 1.89850 2.66783 3.03551 3.17874 3.37177 3.44026 3.54692 4.21301 4.41135 4.48958 4.50083 4.76189 4.82676 4.99064 5.08737 5.20753 5.21505 5.31641 5.36531 5.41549 5.51773 5.56757 5.64682 5.66000 5.77355 5.83700 5.93309 6.01614 6.03919 6.05591 6.18544 6.22040 6.41729 6.53061 6.67230 7.34677 7.41855 7.56178 7.62600 7.77986 8.46807 8.57519 8.98756 9.59142 11.08788 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.028104 B = 0.004219 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.054969 B = 6635.408604 C = 7201.425610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.109 4.109 3 C -0.064 4.064 4 C 0.494 3.506 5 O -0.516 6.516 6 O -0.503 6.503 7 C -0.099 4.099 8 C -0.137 4.137 9 C 0.103 3.897 10 N -0.619 5.619 11 C 0.515 3.485 12 O -0.535 6.535 13 C -0.120 4.120 14 C 0.002 3.998 15 C -0.525 4.525 16 H 0.072 0.928 17 C 0.070 3.930 18 N -0.904 5.904 19 Si 0.877 3.123 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.261 1.261 23 C 0.122 3.878 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.404 0.596 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.023 0.977 39 H 0.019 0.981 40 H 0.263 0.737 41 H 0.064 0.936 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.832 6.693 -21.297 22.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.146 4.146 3 C -0.066 4.066 4 C 0.336 3.664 5 O -0.403 6.403 6 O -0.314 6.314 7 C -0.136 4.136 8 C -0.175 4.175 9 C -0.020 4.020 10 N -0.355 5.355 11 C 0.305 3.695 12 O -0.410 6.410 13 C -0.160 4.160 14 C -0.036 4.036 15 C -0.563 4.563 16 H 0.090 0.910 17 C -0.132 4.132 18 N -0.542 5.542 19 Si 0.704 3.296 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.185 1.185 23 C -0.001 4.001 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.263 0.737 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.042 0.958 39 H 0.037 0.963 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.460 6.592 -20.984 22.265 hybrid contribution -0.950 0.360 -0.604 1.182 sum 2.510 6.952 -21.588 22.818 Atomic orbital electron populations 1.22137 0.94353 1.02163 1.04019 1.21571 0.97512 0.92441 1.03125 1.21036 0.97419 0.97179 0.90940 1.23309 0.79983 0.76111 0.87018 1.90706 1.56928 1.45934 1.46780 1.84719 1.26056 1.72301 1.48372 1.21463 0.91025 1.02095 0.99064 1.22024 1.01351 1.00269 0.93897 1.21806 0.79808 1.01174 0.99178 1.48187 1.06962 1.61725 1.18587 1.21578 0.87164 0.76776 0.83936 1.90645 1.14740 1.55937 1.79694 1.21696 1.01325 1.00292 0.92705 1.19379 0.93634 0.97010 0.93600 1.21101 0.95337 1.38924 1.00915 0.90951 1.24962 0.98720 0.94412 0.95075 1.69909 1.35739 1.40640 1.07942 0.86807 0.86013 0.79623 0.77184 1.20245 1.21458 1.18524 1.21478 1.01106 0.95043 0.82498 0.92713 0.91074 0.90813 0.91751 0.89699 0.73736 0.90738 0.90823 0.89900 0.90584 0.91348 0.88403 0.89592 0.89572 0.95839 0.96270 0.92715 0.91729 0.87262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 9.05 37.16 0.34 -1.61 16 2 C -0.11 -1.15 4.49 -26.73 -0.12 -1.27 16 3 C -0.06 -0.66 0.51 -155.54 -0.08 -0.74 16 4 C 0.49 5.16 6.86 36.01 0.25 5.41 16 5 O -0.52 -6.54 16.74 -18.75 -0.31 -6.85 16 6 O -0.50 -4.16 10.28 -39.23 -0.40 -4.56 16 7 C -0.10 -0.90 4.01 -26.69 -0.11 -1.01 16 8 C -0.14 -1.15 5.74 -26.61 -0.15 -1.30 16 9 C 0.10 1.03 6.34 -3.71 -0.02 1.01 16 10 N -0.62 -8.14 2.41 -172.77 -0.42 -8.56 16 11 C 0.51 9.00 7.70 -10.99 -0.08 8.91 16 12 O -0.53 -11.24 15.05 5.55 0.08 -11.16 16 13 C -0.12 -2.25 3.98 -27.89 -0.11 -2.36 16 14 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 15 C -0.52 -14.75 9.66 -34.44 -0.33 -15.08 16 16 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 17 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 18 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 19 Si 0.88 22.36 27.47 -169.99 -4.67 17.69 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.26 -6.62 6.54 56.52 0.37 -6.26 16 23 C 0.12 1.47 4.82 -3.71 -0.02 1.45 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.99 5.96 -51.93 -0.31 0.68 16 26 H 0.07 0.76 5.33 -51.93 -0.28 0.49 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.98 5.97 -51.93 -0.31 0.67 16 29 H 0.40 1.60 9.10 45.56 0.41 2.01 16 30 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 31 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 32 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.08 0.67 6.33 -51.93 -0.33 0.34 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.10 0.98 5.93 -51.93 -0.31 0.67 16 36 H 0.09 1.47 7.69 -51.93 -0.40 1.07 16 37 H 0.09 1.49 7.94 -51.93 -0.41 1.08 16 38 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 39 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.11 1.51 5.04 -51.93 -0.26 1.25 16 LS Contribution 325.82 15.07 4.91 4.91 Total: -1.00 -34.63 325.82 -6.17 -40.80 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -5.50 Total: -0.62 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -0.64 Total: -4.70 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.36 Total: -35.51 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.63 Total: -22.57 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.67 Total: 17.69 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.63 -6.17 -40.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603593962.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.323 kcal (2) G-P(sol) polarization free energy of solvation -34.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds