Wall clock time and date at job start Tue Mar 31 2020 05:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.46877 * 2 1 4 4 C 1.52999 * 109.46948 * 119.99660 * 2 1 3 5 5 C 1.53005 * 109.46776 * 65.00452 * 4 2 1 6 6 H 1.08997 * 115.55270 * 29.32813 * 5 4 2 7 7 C 1.53069 * 117.49172 * 243.59808 * 5 4 2 8 8 C 1.52998 * 59.98562 * 252.51652 * 7 5 4 9 9 H 1.08994 * 117.50382 * 107.50351 * 8 7 5 10 10 C 1.50703 * 117.49960 * 252.50189 * 8 7 5 11 11 O 1.21297 * 119.99704 * 78.07592 * 10 8 7 12 12 N 1.34774 * 120.00147 * 258.07880 * 10 8 7 13 13 C 1.37104 * 119.99695 * 354.92129 * 12 10 8 14 14 H 1.07999 * 119.99729 * 129.78044 * 13 12 10 15 15 C 1.38949 * 120.00140 * 309.77193 * 13 12 10 16 16 N 1.31404 * 120.00200 * 159.70426 * 15 13 12 17 17 Si 1.86806 * 119.99967 * 339.71201 * 15 13 12 18 18 H 1.48496 * 109.47185 * 84.82830 * 17 15 13 19 19 H 1.48498 * 109.47086 * 324.82960 * 17 15 13 20 20 H 1.48497 * 109.47026 * 204.82751 * 17 15 13 21 21 C 1.46504 * 120.00162 * 174.92386 * 12 10 8 22 22 C 1.53000 * 109.46964 * 269.99838 * 21 12 10 23 23 C 1.50694 * 109.47181 * 180.02562 * 22 21 12 24 24 O 1.20825 * 119.99898 * 359.97438 * 23 22 21 25 25 O 1.34236 * 119.99998 * 180.02562 * 23 22 21 26 26 H 1.09002 * 109.46932 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47276 * 299.99984 * 1 2 3 28 28 H 1.08999 * 109.47388 * 60.00122 * 1 2 3 29 29 H 1.08998 * 109.47254 * 240.00552 * 2 1 3 30 30 H 1.08996 * 109.46783 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47012 * 300.00108 * 3 2 1 32 32 H 1.08998 * 109.46727 * 60.00230 * 3 2 1 33 33 H 1.08992 * 109.47560 * 305.00366 * 4 2 1 34 34 H 1.09005 * 109.47217 * 184.99946 * 4 2 1 35 35 H 1.09003 * 117.51365 * 145.04284 * 7 5 4 36 36 H 1.09003 * 117.49766 * 359.97438 * 7 5 4 37 37 H 0.96998 * 120.00373 * 180.02562 * 16 15 13 38 38 H 1.08995 * 109.47035 * 29.99880 * 21 12 10 39 39 H 1.08998 * 109.46900 * 149.99984 * 21 12 10 40 40 H 1.09003 * 109.46892 * 300.00415 * 22 21 12 41 41 H 1.09006 * 109.47329 * 59.99463 * 22 21 12 42 42 H 0.96699 * 116.99687 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1880 6 1 1.5392 -2.6154 0.1867 7 6 0.6790 -2.7111 2.2662 8 6 2.1539 -3.1169 2.2937 9 1 2.7838 -2.6731 3.0646 10 6 2.4924 -4.5359 1.9153 11 8 2.5149 -4.8631 0.7475 12 7 2.7700 -5.4412 2.8743 13 6 2.8469 -5.0488 4.1857 14 1 2.2978 -5.5877 4.9437 15 6 3.6313 -3.9579 4.5397 16 7 3.4145 -3.3335 5.6754 17 14 4.9942 -3.3788 3.4009 18 1 4.4285 -2.4638 2.3772 19 1 5.6105 -4.5515 2.7301 20 1 6.0269 -2.6606 4.1901 21 6 2.9896 -6.8445 2.5155 22 6 1.6567 -7.5947 2.5515 23 6 1.8826 -9.0384 2.1830 24 8 2.9955 -9.4272 1.9182 25 8 0.8473 -9.8921 2.1480 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6054 -0.2617 2.1370 34 1 3.1264 -0.6443 1.2952 35 1 -0.0466 -3.4705 1.9744 36 1 0.3389 -2.0000 3.0191 37 1 3.9618 -2.5718 5.9223 38 1 3.4114 -6.9012 1.5121 39 1 3.6808 -7.2974 3.2263 40 1 1.2348 -7.5379 3.5550 41 1 0.9654 -7.1418 1.8407 42 1 1.0417 -10.8081 1.9066 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603836913.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:53 Heat of formation + Delta-G solvation = -112.923995 kcal Electronic energy + Delta-G solvation = -23062.786462 eV Core-core repulsion = 19622.503839 eV Total energy + Delta-G solvation = -3440.282624 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.07436 -39.32865 -37.25238 -36.00162 -35.04856 -34.48680 -32.56673 -30.71323 -27.34339 -27.02811 -25.41648 -24.51092 -22.54156 -20.89598 -20.39590 -19.79533 -19.06239 -17.93818 -17.40462 -16.44629 -15.86020 -15.45935 -15.06601 -14.81364 -14.66109 -13.91462 -13.81840 -13.67951 -13.31975 -13.06805 -12.87651 -12.60154 -12.42045 -12.13996 -11.87176 -11.79576 -11.58258 -11.35752 -11.22577 -11.04628 -10.88447 -10.64764 -10.58090 -10.45585 -10.36948 -10.33025 -10.13975 -9.41487 -9.25511 -8.97835 -8.70149 -7.77110 -6.55433 -4.28510 2.44286 3.11304 3.13985 3.22791 3.31726 3.53894 4.08195 4.27028 4.59076 4.82435 4.96355 5.10114 5.11799 5.31377 5.47104 5.55495 5.59667 5.62510 5.69639 5.79144 5.86164 5.87267 5.94150 5.96167 6.01690 6.11277 6.17204 6.26327 6.30345 6.37122 6.44559 6.46916 6.55314 6.56711 6.70650 6.76281 6.91734 7.57046 7.64180 8.08814 8.37913 8.90210 9.18657 9.61153 10.53578 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.016342 B = 0.005301 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.994199 B = 5280.817804 C = 6289.857992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.084 4.084 5 C -0.136 4.136 6 H 0.109 0.891 7 C -0.143 4.143 8 C -0.158 4.158 9 H 0.129 0.871 10 C 0.513 3.487 11 O -0.590 6.590 12 N -0.465 5.465 13 C -0.348 4.348 14 H 0.100 0.900 15 C 0.080 3.920 16 N -0.854 5.854 17 Si 0.844 3.156 18 H -0.250 1.250 19 H -0.263 1.263 20 H -0.283 1.283 21 C 0.120 3.880 22 C -0.123 4.123 23 C 0.485 3.515 24 O -0.519 6.519 25 O -0.521 6.521 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.277 0.723 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.625 1.777 -5.983 8.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.122 4.122 5 C -0.154 4.154 6 H 0.127 0.873 7 C -0.181 4.181 8 C -0.179 4.179 9 H 0.147 0.853 10 C 0.304 3.696 11 O -0.475 6.475 12 N -0.185 5.185 13 C -0.475 4.475 14 H 0.118 0.882 15 C -0.128 4.128 16 N -0.488 5.488 17 Si 0.668 3.332 18 H -0.175 1.175 19 H -0.188 1.188 20 H -0.209 1.209 21 C -0.004 4.004 22 C -0.162 4.162 23 C 0.328 3.672 24 O -0.407 6.407 25 O -0.333 6.333 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.128 0.872 41 H 0.122 0.878 42 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -5.328 2.052 -6.348 8.538 hybrid contribution 1.013 -0.385 -0.291 1.122 sum -4.315 1.667 -6.639 8.092 Atomic orbital electron populations 1.21826 0.95251 1.02133 1.00934 1.21104 0.95997 0.95595 0.98542 1.21848 1.00887 0.96340 1.01363 1.21246 1.00602 0.92767 0.97556 1.22368 1.03626 0.93939 0.95499 0.87289 1.22870 0.91729 1.02692 1.00772 1.22441 0.99242 0.93828 1.02376 0.85314 1.19839 0.78051 0.86876 0.84881 1.90534 1.56509 1.81312 1.19111 1.43626 1.62459 1.05069 1.07380 1.18894 1.30036 1.16023 0.82546 0.88232 1.25508 0.96229 0.95682 0.95430 1.69730 1.37711 1.18731 1.22623 0.87643 0.83095 0.80801 0.81677 1.17530 1.18752 1.20887 1.21234 0.93419 0.83442 1.02258 1.21776 1.02899 0.86560 1.04993 1.23692 0.81785 0.89203 0.72562 1.90700 1.25434 1.78991 1.45563 1.84584 1.41360 1.24847 1.82486 0.92087 0.92898 0.93452 0.91285 0.92882 0.93022 0.92791 0.91736 0.91913 0.89303 0.88646 0.91305 0.90658 0.89986 0.87204 0.87832 0.73831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.01 37.16 0.33 -1.36 16 2 C -0.09 -1.21 2.88 -90.61 -0.26 -1.47 16 3 C -0.15 -1.64 9.19 37.16 0.34 -1.29 16 4 C -0.08 -1.32 4.96 -26.73 -0.13 -1.45 16 5 C -0.14 -2.47 4.24 -90.58 -0.38 -2.85 16 6 H 0.11 2.06 7.63 -51.93 -0.40 1.67 16 7 C -0.14 -2.60 9.88 -26.70 -0.26 -2.87 16 8 C -0.16 -3.45 3.27 -91.77 -0.30 -3.75 16 9 H 0.13 3.00 3.52 -51.93 -0.18 2.82 16 10 C 0.51 12.26 5.71 -10.98 -0.06 12.19 16 11 O -0.59 -14.95 15.86 5.54 0.09 -14.86 16 12 N -0.46 -10.93 1.99 -114.81 -0.23 -11.15 16 13 C -0.35 -8.75 9.29 -14.93 -0.14 -8.88 16 14 H 0.10 2.60 8.06 -52.49 -0.42 2.18 16 15 C 0.08 2.04 3.96 -17.47 -0.07 1.97 16 16 N -0.85 -22.51 13.96 55.50 0.77 -21.74 16 17 Si 0.84 20.13 24.84 -169.99 -4.22 15.91 16 18 H -0.25 -5.78 5.78 56.52 0.33 -5.45 16 19 H -0.26 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.12 2.51 4.71 -4.04 -0.02 2.49 16 22 C -0.12 -2.12 6.13 -27.89 -0.17 -2.29 16 23 C 0.49 7.73 8.33 36.00 0.30 8.03 16 24 O -0.52 -9.69 16.74 -18.75 -0.31 -10.00 16 25 O -0.52 -6.46 13.42 -39.27 -0.53 -6.99 16 26 H 0.06 0.76 7.38 -51.93 -0.38 0.38 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.97 7.87 -51.93 -0.41 0.56 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.10 1.61 8.03 -51.93 -0.42 1.19 16 37 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 38 H 0.08 1.66 7.32 -51.93 -0.38 1.28 16 39 H 0.08 1.70 8.00 -51.93 -0.42 1.29 16 40 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 41 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 42 H 0.40 3.09 9.10 45.56 0.41 3.50 16 LS Contribution 345.02 15.07 5.20 5.20 Total: -1.00 -29.98 345.02 -6.08 -36.07 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -6.03 Total: 9.10 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -0.83 Total: -1.53 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.55 Total: -32.89 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -0.75 Total: -31.85 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.22 Total: 15.91 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.98 -6.08 -36.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603836913.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.855 kcal (2) G-P(sol) polarization free energy of solvation -29.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds