Wall clock time and date at job start Tue Mar 31 2020 06:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46698 * 2 1 4 4 C 1.50694 * 109.47190 * 60.00146 * 3 2 1 5 5 O 1.20825 * 120.00514 * 359.97438 * 4 3 2 6 6 O 1.34229 * 119.99995 * 180.02562 * 4 3 2 7 7 N 1.46500 * 109.47155 * 240.00325 * 2 1 3 8 8 C 1.34777 * 119.99584 * 184.01748 * 7 2 1 9 9 O 1.21276 * 120.00148 * 5.16572 * 8 7 2 10 10 C 1.50703 * 119.99759 * 185.17250 * 8 7 2 11 11 C 1.52991 * 109.47266 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47215 * 179.97438 * 11 10 8 13 13 C 1.50705 * 109.47272 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99833 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99819 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00557 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99463 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47313 * 60.00647 * 17 15 13 19 19 H 1.48506 * 109.46936 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47531 * 300.00164 * 17 15 13 21 21 C 1.53000 * 109.47191 * 119.99967 * 2 1 3 22 22 C 1.52997 * 117.51789 * 351.14920 * 21 2 1 23 23 C 1.52993 * 117.49764 * 59.77935 * 21 2 1 24 24 H 1.08996 * 109.47596 * 300.00036 * 1 2 3 25 25 H 1.09002 * 109.47351 * 60.00031 * 1 2 3 26 26 H 1.08997 * 109.47043 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46768 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47555 * 299.99668 * 3 2 1 29 29 H 0.96698 * 117.00431 * 180.02562 * 6 4 3 30 30 H 0.96996 * 119.99761 * 4.01105 * 7 2 1 31 31 H 1.09003 * 109.47036 * 299.99621 * 10 8 7 32 32 H 1.09000 * 109.47167 * 59.99248 * 10 8 7 33 33 H 1.08993 * 109.47615 * 299.99899 * 11 10 8 34 34 H 1.09000 * 109.47359 * 59.99711 * 11 10 8 35 35 H 1.09003 * 109.47161 * 300.00013 * 12 11 10 36 36 H 1.08993 * 109.47390 * 60.00279 * 12 11 10 37 37 H 0.96996 * 120.00193 * 180.02562 * 16 15 13 38 38 H 1.09008 * 115.54667 * 205.45252 * 21 2 1 39 39 H 1.08997 * 117.50013 * 214.97226 * 22 21 2 40 40 H 1.09003 * 117.49991 * 359.97438 * 22 21 2 41 41 H 1.08990 * 117.50299 * 359.97438 * 23 21 2 42 42 H 1.09006 * 117.49409 * 144.97219 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5376 2.1529 1.2304 5 8 0.8426 1.5659 2.0256 6 8 1.8613 3.4382 1.4426 7 7 2.0183 -0.6905 -1.1962 8 6 3.3407 -0.8849 -1.3693 9 8 4.1193 -0.5730 -0.4934 10 6 3.8518 -1.4898 -2.6515 11 6 5.3766 -1.5999 -2.5912 12 6 5.8955 -2.2146 -3.8927 13 6 7.3974 -2.3236 -3.8331 14 1 7.9287 -1.9877 -2.9548 15 6 8.0931 -2.8522 -4.8996 16 7 7.4462 -3.2609 -5.9692 17 14 9.9548 -2.9867 -4.8258 18 1 10.3439 -3.8489 -3.6810 19 1 10.4584 -3.5834 -6.0890 20 1 10.5422 -1.6343 -4.6492 21 6 2.0400 -0.7212 1.2492 22 6 1.0116 -1.0971 2.3178 23 6 1.6315 -2.1836 1.4369 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.5159 3.8511 2.2458 30 1 1.3899 -1.0079 -1.8635 31 1 3.4205 -2.4822 -2.7824 32 1 3.5665 -0.8561 -3.4913 33 1 5.8077 -0.6074 -2.4606 34 1 5.6622 -2.2334 -1.7514 35 1 5.4644 -3.2072 -4.0229 36 1 5.6100 -1.5815 -4.7327 37 1 7.9356 -3.6331 -6.7194 38 1 3.0340 -0.4288 1.5880 39 1 1.3289 -1.0521 3.3596 40 1 -0.0286 -0.8302 2.1312 41 1 0.9991 -2.6318 0.6707 42 1 2.3569 -2.8535 1.8988 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604078097.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:03 Heat of formation + Delta-G solvation = -116.567499 kcal Electronic energy + Delta-G solvation = -22777.040931 eV Core-core repulsion = 19336.600314 eV Total energy + Delta-G solvation = -3440.440618 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.10069 -39.68034 -37.82335 -36.16824 -34.57252 -34.12277 -32.18981 -31.40739 -28.61808 -27.75876 -24.59775 -23.56325 -22.32224 -21.81489 -20.94387 -19.73938 -18.97613 -18.32077 -17.10256 -16.79357 -16.20635 -16.01127 -15.74901 -15.36657 -15.09558 -14.47216 -14.34628 -13.57020 -13.45474 -13.11510 -12.91529 -12.61985 -12.53503 -12.24427 -11.84688 -11.78133 -11.61678 -11.34849 -11.22637 -11.07534 -10.77467 -10.63873 -10.59876 -10.53651 -10.20547 -10.13476 -9.66032 -9.50324 -9.21355 -9.08140 -8.96636 -8.30708 -5.96581 -3.98012 2.03182 2.66758 2.93806 3.36961 3.37312 3.40733 3.44742 4.02578 4.31521 4.50241 4.51218 4.72710 5.04527 5.12582 5.17017 5.21974 5.24710 5.28252 5.39453 5.46644 5.64938 5.68958 5.73390 5.75658 5.80348 5.87008 6.02744 6.18679 6.27845 6.31481 6.35104 6.53430 6.74461 6.94754 7.17920 7.62905 7.71438 7.72265 7.85192 8.04189 8.47194 8.49010 9.08964 9.65902 11.14901 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.027559 B = 0.003176 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.771773 B = 8814.739276 C = 9103.130041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.221 3.779 3 C -0.125 4.125 4 C 0.484 3.516 5 O -0.502 6.502 6 O -0.519 6.519 7 N -0.731 5.731 8 C 0.516 3.484 9 O -0.530 6.530 10 C -0.139 4.139 11 C -0.094 4.094 12 C 0.020 3.980 13 C -0.518 4.518 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.144 4.144 22 C -0.154 4.154 23 C -0.178 4.178 24 H 0.099 0.901 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.122 0.878 28 H 0.106 0.894 29 H 0.408 0.592 30 H 0.401 0.599 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.015 0.985 36 H 0.015 0.985 37 H 0.260 0.740 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.410 9.254 12.892 24.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.135 3.865 3 C -0.164 4.164 4 C 0.327 3.673 5 O -0.390 6.390 6 O -0.331 6.331 7 N -0.385 5.385 8 C 0.305 3.695 9 O -0.405 6.405 10 C -0.179 4.179 11 C -0.132 4.132 12 C -0.017 4.017 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.163 4.163 22 C -0.192 4.192 23 C -0.215 4.215 24 H 0.118 0.882 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.140 0.860 28 H 0.124 0.876 29 H 0.267 0.733 30 H 0.236 0.764 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.033 0.967 36 H 0.033 0.967 37 H 0.070 0.930 38 H 0.127 0.873 39 H 0.103 0.897 40 H 0.118 0.882 41 H 0.107 0.893 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.834 9.063 13.189 23.961 hybrid contribution 0.580 -0.001 0.056 0.582 sum -17.254 9.061 13.244 23.563 Atomic orbital electron populations 1.22476 0.93078 1.03356 1.04063 1.19322 0.93644 0.88579 0.84992 1.21770 1.05423 0.94931 0.94272 1.23240 0.76989 0.79527 0.87592 1.90674 1.35691 1.66127 1.46473 1.84561 1.72577 1.27439 1.48488 1.46305 1.08033 1.60797 1.23350 1.21239 0.81345 0.77345 0.89601 1.90638 1.55815 1.50310 1.43785 1.21855 1.00691 1.01519 0.93855 1.21428 0.89442 1.01369 1.00955 1.19127 0.95716 0.95709 0.91111 1.21239 0.92288 1.40557 1.01584 0.92653 1.25014 0.98410 0.95552 0.95497 1.69948 1.35579 1.42450 1.05802 0.86660 0.85795 0.78388 0.77178 1.20234 1.21343 1.20232 1.22420 0.99920 0.97415 0.96570 1.22954 0.98713 1.01862 0.95657 1.22891 1.03737 0.91675 1.03170 0.88240 0.92320 0.91592 0.86030 0.87627 0.73340 0.76438 0.89478 0.89398 0.92749 0.92734 0.96657 0.96652 0.93020 0.87287 0.89652 0.88247 0.89258 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 6.91 37.16 0.26 -1.19 16 2 C 0.22 2.32 0.62 -131.82 -0.08 2.24 16 3 C -0.13 -1.30 4.85 -27.88 -0.14 -1.44 16 4 C 0.48 4.83 7.76 36.00 0.28 5.11 16 5 O -0.50 -5.60 11.81 -18.75 -0.22 -5.82 16 6 O -0.52 -4.22 13.42 -39.26 -0.53 -4.74 16 7 N -0.73 -7.93 4.98 -47.61 -0.24 -8.16 16 8 C 0.52 7.65 7.24 -10.98 -0.08 7.57 16 9 O -0.53 -9.62 12.87 5.56 0.07 -9.55 16 10 C -0.14 -2.20 5.70 -27.89 -0.16 -2.36 16 11 C -0.09 -1.99 4.44 -26.73 -0.12 -2.11 16 12 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 13 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 17 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C -0.14 -1.78 2.93 -90.62 -0.27 -2.05 16 22 C -0.15 -1.69 7.89 -26.73 -0.21 -1.90 16 23 C -0.18 -2.06 9.77 -26.74 -0.26 -2.32 16 24 H 0.10 0.92 4.50 -51.93 -0.23 0.69 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.52 7.07 -51.93 -0.37 0.15 16 27 H 0.12 1.54 6.65 -51.93 -0.35 1.20 16 28 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.41 1.52 9.10 45.56 0.41 1.94 16 30 H 0.40 3.29 8.48 -40.82 -0.35 2.94 16 31 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.05 1.19 8.10 -51.93 -0.42 0.77 16 34 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.11 1.64 7.29 -51.92 -0.38 1.27 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.10 1.01 5.77 -51.93 -0.30 0.71 16 41 H 0.09 0.95 7.59 -51.93 -0.39 0.56 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 338.73 15.07 5.10 5.10 Total: -1.00 -33.89 338.73 -7.13 -41.03 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -5.71 Total: 3.31 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -1.33 Total: -11.81 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.50 Total: -34.52 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.68 Total: -20.11 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.89 -7.13 -41.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604078097.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.542 kcal (2) G-P(sol) polarization free energy of solvation -33.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds