Wall clock time and date at job start Tue Mar 31 2020 06:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47534 * 2 1 4 4 C 1.50704 * 109.46898 * 300.00409 * 3 2 1 5 5 O 1.20826 * 119.99934 * 359.97438 * 4 3 2 6 6 O 1.34222 * 119.99608 * 179.97438 * 4 3 2 7 7 N 1.46499 * 109.47398 * 120.00408 * 2 1 3 8 8 C 1.34772 * 120.00248 * 175.09721 * 7 2 1 9 9 O 1.21278 * 120.00117 * 5.19485 * 8 7 2 10 10 C 1.50707 * 119.99941 * 185.19820 * 8 7 2 11 11 C 1.53003 * 109.46909 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47059 * 179.97438 * 11 10 8 13 13 C 1.50702 * 109.47251 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99814 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99869 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00175 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99618 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46978 * 60.00045 * 17 15 13 19 19 H 1.48498 * 109.46745 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47401 * 299.99768 * 17 15 13 21 21 C 1.52996 * 109.46959 * 239.99949 * 2 1 3 22 22 C 1.53002 * 117.49834 * 8.90255 * 21 2 1 23 23 C 1.52998 * 117.50228 * 300.24265 * 21 2 1 24 24 H 1.09000 * 109.47118 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47225 * 59.99762 * 1 2 3 26 26 H 1.09001 * 109.46524 * 299.99493 * 1 2 3 27 27 H 1.09006 * 109.46608 * 60.00225 * 3 2 1 28 28 H 1.08999 * 109.47309 * 179.97438 * 3 2 1 29 29 H 0.96705 * 116.99914 * 180.02562 * 6 4 3 30 30 H 0.97005 * 120.00078 * 355.09547 * 7 2 1 31 31 H 1.08998 * 109.47045 * 299.99441 * 10 8 7 32 32 H 1.08997 * 109.46870 * 60.00241 * 10 8 7 33 33 H 1.09007 * 109.47135 * 299.99972 * 11 10 8 34 34 H 1.09001 * 109.47141 * 59.99877 * 11 10 8 35 35 H 1.08995 * 109.46980 * 300.00248 * 12 11 10 36 36 H 1.09001 * 109.47136 * 60.00007 * 12 11 10 37 37 H 0.96996 * 119.99663 * 180.02562 * 16 15 13 38 38 H 1.09002 * 115.55556 * 154.56842 * 21 2 1 39 39 H 1.09000 * 117.49980 * 0.02562 * 22 21 2 40 40 H 1.09002 * 117.49566 * 145.02024 * 22 21 2 41 41 H 1.09002 * 117.50133 * 214.98137 * 23 21 2 42 42 H 1.09002 * 117.49846 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5377 2.1529 -1.2305 5 8 0.8433 1.5656 -2.0260 6 8 1.8616 3.4381 -1.4426 7 7 2.0184 -0.6907 1.1961 8 6 3.3394 -0.9009 1.3607 9 8 4.1308 -0.4369 0.5675 10 6 3.8332 -1.7127 2.5305 11 6 5.3601 -1.7981 2.4837 12 6 5.8615 -2.6217 3.6716 13 6 7.3654 -2.7064 3.6252 14 1 7.9092 -2.2216 2.8279 15 6 8.0470 -3.4036 4.6000 16 7 7.3848 -3.9943 5.5706 17 14 9.9112 -3.5091 4.5420 18 1 10.4867 -2.1418 4.6100 19 1 10.3978 -4.3084 5.6951 20 1 10.3310 -4.1604 3.2753 21 6 2.0399 -0.7212 -1.2492 22 6 1.0113 -1.0958 -2.3181 23 6 1.6310 -2.1835 -1.4372 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 0.5138 0.8901 27 1 1.6768 1.9562 0.8901 28 1 3.1301 1.4424 0.0005 29 1 1.5155 3.8513 -2.2455 30 1 1.3910 -0.9967 1.8697 31 1 3.5248 -1.2349 3.4603 32 1 3.4111 -2.7164 2.4802 33 1 5.6690 -2.2757 1.5537 34 1 5.7819 -0.7943 2.5341 35 1 5.5526 -2.1438 4.6012 36 1 5.4398 -3.6256 3.6216 37 1 7.8645 -4.4845 6.2566 38 1 3.0340 -0.4292 -1.5880 39 1 -0.0287 -0.8281 -2.1315 40 1 1.3287 -1.0506 -3.3598 41 1 2.3559 -2.8534 -1.8998 42 1 0.9990 -2.6319 -0.6706 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604078098.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:06 Heat of formation + Delta-G solvation = -116.783368 kcal Electronic energy + Delta-G solvation = -22782.145297 eV Core-core repulsion = 19341.695319 eV Total energy + Delta-G solvation = -3440.449979 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.09675 -39.67725 -37.83444 -36.16181 -34.56710 -34.11750 -32.20344 -31.40280 -28.59689 -27.75614 -24.59535 -23.57627 -22.34034 -21.80832 -20.94836 -19.73935 -18.96562 -18.31112 -17.09424 -16.80841 -16.20134 -15.99650 -15.74283 -15.42600 -15.04795 -14.46985 -14.35099 -13.57397 -13.48492 -13.04887 -12.95717 -12.59622 -12.53160 -12.24386 -11.85220 -11.77862 -11.61080 -11.34874 -11.22993 -11.08943 -10.77467 -10.63612 -10.59887 -10.53331 -10.18943 -10.14533 -9.65890 -9.52102 -9.21368 -9.08368 -8.97636 -8.30600 -5.96492 -3.97905 2.04426 2.69283 2.91092 3.37369 3.38180 3.40794 3.44808 4.00623 4.32240 4.50316 4.51596 4.72898 5.03590 5.11440 5.17286 5.21930 5.24992 5.28309 5.39551 5.49207 5.66143 5.68245 5.73307 5.75439 5.80777 5.87659 6.01820 6.17428 6.27899 6.29456 6.35187 6.53104 6.74664 6.94928 7.18056 7.62827 7.72375 7.72461 7.85357 8.04328 8.46902 8.48848 9.09081 9.66001 11.15001 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.028027 B = 0.003175 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.809903 B = 8816.069031 C = 9114.483141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.222 3.778 3 C -0.127 4.127 4 C 0.484 3.516 5 O -0.503 6.503 6 O -0.519 6.519 7 N -0.731 5.731 8 C 0.518 3.482 9 O -0.532 6.532 10 C -0.139 4.139 11 C -0.094 4.094 12 C 0.020 3.980 13 C -0.518 4.518 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.148 4.148 22 C -0.152 4.152 23 C -0.178 4.178 24 H 0.065 0.935 25 H 0.099 0.901 26 H 0.058 0.942 27 H 0.104 0.896 28 H 0.126 0.874 29 H 0.408 0.592 30 H 0.401 0.599 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.015 0.985 36 H 0.015 0.985 37 H 0.260 0.740 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.304 10.527 -12.171 24.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.136 3.864 3 C -0.165 4.165 4 C 0.326 3.674 5 O -0.391 6.391 6 O -0.331 6.331 7 N -0.385 5.385 8 C 0.306 3.694 9 O -0.408 6.408 10 C -0.179 4.179 11 C -0.132 4.132 12 C -0.017 4.017 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.167 4.167 22 C -0.189 4.189 23 C -0.215 4.215 24 H 0.084 0.916 25 H 0.118 0.882 26 H 0.077 0.923 27 H 0.122 0.878 28 H 0.144 0.856 29 H 0.266 0.734 30 H 0.236 0.764 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.033 0.967 36 H 0.033 0.967 37 H 0.070 0.930 38 H 0.126 0.874 39 H 0.118 0.882 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -17.724 10.385 -12.440 24.015 hybrid contribution 0.573 0.001 -0.067 0.577 sum -17.151 10.385 -12.507 23.631 Atomic orbital electron populations 1.22479 0.93098 1.03359 1.04056 1.19317 0.93617 0.88660 0.84856 1.21831 1.05801 0.94799 0.94103 1.23298 0.76930 0.79510 0.87658 1.90671 1.35769 1.66118 1.46531 1.84564 1.72532 1.27472 1.48505 1.46299 1.08200 1.60891 1.23082 1.21228 0.81320 0.79622 0.87191 1.90622 1.54831 1.49807 1.45500 1.21854 1.00818 0.99725 0.95512 1.21432 0.89425 1.01266 1.01062 1.19126 0.95790 0.94649 0.92096 1.21238 0.92162 1.32377 1.09883 0.92653 1.25015 0.98375 0.95586 0.95505 1.69950 1.35504 1.34777 1.13545 0.86658 0.85828 0.78105 0.77427 1.20231 1.21344 1.20235 1.22412 1.00033 0.97498 0.96789 1.22954 0.98677 1.01688 0.95608 1.22930 1.03810 0.91575 1.03221 0.91575 0.88244 0.92334 0.87756 0.85576 0.73385 0.76438 0.89487 0.89378 0.92736 0.92747 0.96651 0.96662 0.93023 0.87414 0.88186 0.89607 0.89189 0.89135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 6.92 37.16 0.26 -1.19 16 2 C 0.22 2.33 0.62 -131.82 -0.08 2.25 16 3 C -0.13 -1.33 4.86 -27.88 -0.14 -1.47 16 4 C 0.48 4.86 7.76 36.01 0.28 5.14 16 5 O -0.50 -5.63 11.81 -18.75 -0.22 -5.85 16 6 O -0.52 -4.26 13.42 -39.24 -0.53 -4.79 16 7 N -0.73 -7.93 4.98 -47.61 -0.24 -8.17 16 8 C 0.52 7.69 7.24 -10.98 -0.08 7.61 16 9 O -0.53 -9.64 12.85 5.56 0.07 -9.57 16 10 C -0.14 -2.21 5.70 -27.88 -0.16 -2.37 16 11 C -0.09 -1.99 4.44 -26.73 -0.12 -2.11 16 12 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 13 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 17 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 21 C -0.15 -1.82 3.04 -90.62 -0.28 -2.10 16 22 C -0.15 -1.65 7.89 -26.69 -0.21 -1.86 16 23 C -0.18 -2.04 9.78 -26.70 -0.26 -2.30 16 24 H 0.07 0.52 7.07 -51.93 -0.37 0.15 16 25 H 0.10 0.92 4.50 -51.93 -0.23 0.69 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.13 1.63 6.36 -51.93 -0.33 1.30 16 29 H 0.41 1.55 9.10 45.56 0.41 1.96 16 30 H 0.40 3.28 8.48 -40.82 -0.35 2.94 16 31 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.05 1.21 8.10 -51.92 -0.42 0.79 16 34 H 0.05 1.19 8.10 -51.93 -0.42 0.77 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.11 1.61 7.43 -51.93 -0.39 1.23 16 39 H 0.10 1.01 5.77 -51.93 -0.30 0.71 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.09 0.95 7.59 -51.93 -0.39 0.56 16 LS Contribution 338.66 15.07 5.10 5.10 Total: -1.00 -33.85 338.66 -7.14 -40.99 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -5.71 Total: 3.42 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -1.33 Total: -11.77 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 0.50 Total: -34.54 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.68 Total: -20.21 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.85 -7.14 -40.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604078098.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.797 kcal (2) G-P(sol) polarization free energy of solvation -33.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds