Wall clock time and date at job start Tue Mar 31 2020 05:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.34778 * 119.99620 * 300.00052 * 3 2 1 5 5 O 1.21277 * 120.00059 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99951 * 179.97438 * 4 3 2 7 7 C 1.52993 * 109.47029 * 179.97438 * 6 4 3 8 8 C 1.53008 * 109.46733 * 179.97438 * 7 6 4 9 9 C 1.53002 * 109.46800 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47097 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99742 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00221 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99857 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00236 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46832 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47164 * 119.99359 * 14 12 10 17 17 H 1.48496 * 109.47371 * 239.99696 * 14 12 10 18 18 C 1.50706 * 109.47238 * 239.99634 * 2 1 3 19 19 O 1.20828 * 119.99857 * 335.00644 * 18 2 1 20 20 O 1.34224 * 119.99822 * 154.99844 * 18 2 1 21 21 C 1.53002 * 109.47143 * 119.99792 * 2 1 3 22 22 C 1.53008 * 117.49651 * 123.61839 * 21 2 1 23 23 C 1.53007 * 60.00003 * 252.51332 * 22 21 2 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 300.00243 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00052 * 1 2 3 27 27 H 0.96994 * 119.99907 * 119.99973 * 3 2 1 28 28 H 1.09002 * 109.46793 * 300.00356 * 6 4 3 29 29 H 1.09000 * 109.47120 * 59.99780 * 6 4 3 30 30 H 1.09002 * 109.47722 * 299.99907 * 7 6 4 31 31 H 1.09004 * 109.46998 * 60.00435 * 7 6 4 32 32 H 1.08992 * 109.47290 * 299.99947 * 8 7 6 33 33 H 1.09004 * 109.46943 * 60.00500 * 8 7 6 34 34 H 1.09002 * 109.47067 * 299.99973 * 9 8 7 35 35 H 1.09000 * 109.47312 * 60.00000 * 9 8 7 36 36 H 0.97005 * 120.00283 * 179.97438 * 13 12 10 37 37 H 0.96700 * 117.00035 * 180.02562 * 20 18 2 38 38 H 1.08991 * 115.55578 * 269.33135 * 21 2 1 39 39 H 1.08991 * 117.50145 * 0.02562 * 22 21 2 40 40 H 1.09009 * 117.49197 * 145.02375 * 22 21 2 41 41 H 1.08994 * 117.49630 * 252.51436 * 23 22 21 42 42 H 1.08997 * 117.49485 * 107.49550 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.6928 2.2110 -1.0109 5 8 0.9959 1.8142 -1.9206 6 6 2.1947 3.6320 -1.0107 7 6 1.6853 4.3529 -2.2602 8 6 2.1944 5.7958 -2.2596 9 6 1.6845 6.5170 -3.5090 10 6 2.1864 7.9380 -3.5088 11 1 2.8067 8.2914 -2.6984 12 6 1.8529 8.7871 -4.5426 13 7 1.0972 8.3568 -5.5291 14 14 2.4745 10.5487 -4.5419 15 1 3.2997 10.7819 -3.3296 16 1 3.2996 10.7829 -5.7542 17 1 1.3189 11.4813 -4.5418 18 6 2.0324 -0.7105 -1.2305 19 8 1.3396 -1.5363 -1.7764 20 8 3.2493 -0.4258 -1.7199 21 6 2.0400 -0.7212 1.2493 22 6 2.9839 -1.9078 1.0441 23 6 1.5415 -2.1468 1.4950 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 2.5760 1.6984 0.7275 28 1 1.8310 4.1456 -0.1207 29 1 3.2847 3.6323 -1.0103 30 1 2.0494 3.8392 -3.1500 31 1 0.5953 4.3527 -2.2609 32 1 1.8300 6.3093 -1.3700 33 1 3.2845 5.7965 -2.2587 34 1 2.0486 6.0036 -4.3989 35 1 0.5945 6.5163 -3.5095 36 1 0.8622 8.9543 -6.2563 37 1 3.5279 -0.9070 -2.5111 38 1 2.2075 -0.0894 2.1215 39 1 3.2419 -2.1743 0.0192 40 1 3.7729 -2.0566 1.7814 41 1 1.3815 -2.4528 2.5288 42 1 0.8503 -2.5708 0.7666 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604269355.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:51 Heat of formation + Delta-G solvation = -123.898838 kcal Electronic energy + Delta-G solvation = -22411.575490 eV Core-core repulsion = 18970.816961 eV Total energy + Delta-G solvation = -3440.758528 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.41213 -39.41991 -37.92981 -36.26931 -35.07577 -34.57548 -32.65938 -30.99020 -29.31183 -26.19672 -25.27732 -23.68850 -22.71085 -22.33577 -20.18183 -20.09718 -19.92223 -18.38669 -17.66767 -17.11089 -16.37329 -16.14482 -15.63492 -15.17745 -14.87842 -14.46422 -14.28185 -14.05791 -13.61641 -13.51722 -12.74217 -12.67326 -12.46953 -12.16454 -12.01096 -11.87693 -11.68684 -11.65080 -11.58650 -11.01895 -10.99292 -10.83232 -10.75064 -10.53553 -10.47613 -10.40912 -9.80605 -9.61125 -9.38012 -9.21553 -8.96351 -8.30007 -5.94505 -3.96988 1.94973 2.49626 2.75648 2.88073 3.29099 3.33657 3.40832 3.44710 3.98872 4.27493 4.39900 4.49561 4.60563 4.78427 4.81519 5.05321 5.16552 5.29940 5.33932 5.36572 5.39877 5.41063 5.51425 5.54416 5.63437 5.85207 6.01282 6.13521 6.14484 6.30345 6.32254 6.54860 6.84479 7.02317 7.20322 7.30499 7.69867 7.75345 7.91060 8.07008 8.14705 8.48786 9.11052 9.66722 11.16876 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.041206 B = 0.002690 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.355096 B =10405.656709 C =10547.851678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.223 3.777 3 N -0.723 5.723 4 C 0.517 3.483 5 O -0.528 6.528 6 C -0.136 4.136 7 C -0.104 4.104 8 C -0.110 4.110 9 C 0.019 3.981 10 C -0.519 4.519 11 H 0.055 0.945 12 C 0.054 3.946 13 N -0.895 5.895 14 Si 0.891 3.109 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.488 3.512 19 O -0.509 6.509 20 O -0.508 6.508 21 C -0.162 4.162 22 C -0.176 4.176 23 C -0.165 4.165 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.406 0.594 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.259 0.741 37 H 0.408 0.592 38 H 0.129 0.871 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.128 -21.271 17.536 27.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.134 3.866 3 N -0.379 5.379 4 C 0.305 3.695 5 O -0.403 6.403 6 C -0.176 4.176 7 C -0.142 4.142 8 C -0.148 4.148 9 C -0.018 4.018 10 C -0.558 4.558 11 H 0.073 0.927 12 C -0.146 4.146 13 N -0.535 5.535 14 Si 0.719 3.281 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.211 1.211 18 C 0.328 3.672 19 O -0.396 6.396 20 O -0.319 6.319 21 C -0.180 4.180 22 C -0.213 4.213 23 C -0.202 4.202 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.106 0.894 27 H 0.242 0.758 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.069 0.931 37 H 0.266 0.734 38 H 0.147 0.853 39 H 0.111 0.889 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.219 -21.508 16.887 27.534 hybrid contribution 0.838 0.822 -0.287 1.208 sum 4.057 -20.686 16.600 26.832 Atomic orbital electron populations 1.22160 0.90415 1.04085 1.04643 1.19634 0.95809 0.82141 0.88968 1.46135 1.54936 1.09875 1.26914 1.21222 0.79299 0.88264 0.80702 1.90712 1.37026 1.77145 1.35377 1.21790 1.02596 0.90560 1.02620 1.21462 1.01232 0.96433 0.95027 1.21648 0.99505 0.92649 1.00953 1.19102 0.96462 0.94423 0.91793 1.21321 1.31206 0.96530 1.06697 0.92698 1.25047 0.95300 0.98607 0.95673 1.69987 1.37087 1.35719 1.10687 0.86557 0.78608 0.85065 0.77885 1.19777 1.21063 1.21054 1.23522 0.78713 0.79970 0.84965 1.90710 1.56825 1.33285 1.58755 1.84556 1.34618 1.65904 1.46835 1.22359 1.06122 0.91768 0.97755 1.23170 0.94024 1.00997 1.03124 1.23117 0.97404 0.96244 1.03446 0.90479 0.90733 0.89423 0.75787 0.88918 0.88853 0.91813 0.91774 0.93447 0.93447 0.96609 0.96592 0.93102 0.73383 0.85327 0.88851 0.87625 0.87594 0.87775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 7.72 37.16 0.29 -1.39 16 2 C 0.22 2.25 0.88 -132.97 -0.12 2.13 16 3 N -0.72 -7.00 4.88 -48.68 -0.24 -7.24 16 4 C 0.52 6.95 7.15 -10.98 -0.08 6.88 16 5 O -0.53 -9.33 13.19 5.56 0.07 -9.26 16 6 C -0.14 -1.74 5.70 -27.89 -0.16 -1.90 16 7 C -0.10 -1.83 4.50 -26.73 -0.12 -1.95 16 8 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 11 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 12 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.90 -27.65 13.29 55.43 0.74 -26.91 16 14 Si 0.89 21.94 29.54 -169.99 -5.02 16.91 16 15 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 C 0.49 6.05 3.55 36.01 0.13 6.18 16 19 O -0.51 -7.64 16.85 -18.75 -0.32 -7.96 16 20 O -0.51 -5.42 12.69 -39.24 -0.50 -5.92 16 21 C -0.16 -1.10 5.34 -90.61 -0.48 -1.58 16 22 C -0.18 -1.17 9.68 -26.72 -0.26 -1.43 16 23 C -0.16 -1.05 9.56 -26.72 -0.26 -1.30 16 24 H 0.08 0.79 6.72 -51.93 -0.35 0.44 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.09 1.24 6.17 -51.93 -0.32 0.92 16 27 H 0.41 2.59 8.40 -40.82 -0.34 2.25 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 31 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.41 2.89 9.10 45.56 0.41 3.31 16 38 H 0.13 0.59 8.04 -51.93 -0.42 0.17 16 39 H 0.09 0.76 6.19 -51.93 -0.32 0.44 16 40 H 0.11 0.52 8.14 -51.92 -0.42 0.10 16 41 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.10 0.81 7.29 -51.93 -0.38 0.43 16 LS Contribution 347.96 15.07 5.24 5.24 Total: -1.00 -36.38 347.96 -7.67 -44.05 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.90 Total: 1.26 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -1.75 Total: -10.18 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.50 Total: -34.15 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.74 Total: -23.14 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -36.38 -7.67 -44.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604269355.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.850 kcal (2) G-P(sol) polarization free energy of solvation -36.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds