Wall clock time and date at job start Tue Mar 31 2020 05:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46699 * 2 1 4 4 C 1.52997 * 109.47134 * 239.99821 * 2 1 3 5 5 C 1.53003 * 109.47134 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47090 * 59.99699 * 5 4 2 7 7 C 1.53005 * 109.47184 * 300.00279 * 6 5 4 8 8 C 1.53002 * 109.46881 * 60.00156 * 7 6 5 9 9 H 1.08990 * 109.47671 * 60.00180 * 8 7 6 10 10 C 1.50706 * 109.47075 * 180.02562 * 8 7 6 11 11 O 1.21292 * 120.00047 * 118.26572 * 10 8 7 12 12 N 1.34774 * 119.99967 * 298.27478 * 10 8 7 13 13 C 1.37105 * 119.99732 * 353.99810 * 12 10 8 14 14 H 1.08003 * 119.99468 * 128.86898 * 13 12 10 15 15 C 1.38949 * 120.00481 * 308.87390 * 13 12 10 16 16 N 1.31408 * 119.99913 * 169.63030 * 15 13 12 17 17 Si 1.86797 * 119.99617 * 349.63538 * 15 13 12 18 18 H 1.48501 * 109.47117 * 268.63238 * 17 15 13 19 19 H 1.48499 * 109.46966 * 148.63762 * 17 15 13 20 20 H 1.48497 * 109.47579 * 28.63523 * 17 15 13 21 21 C 1.46494 * 120.00053 * 174.00717 * 12 10 8 22 22 C 1.50699 * 109.47241 * 274.29265 * 21 12 10 23 23 O 1.20831 * 119.99895 * 0.02562 * 22 21 12 24 24 O 1.34225 * 120.00214 * 180.02562 * 22 21 12 25 25 H 1.08994 * 109.47788 * 300.00164 * 1 2 3 26 26 H 1.08997 * 109.47081 * 60.00462 * 1 2 3 27 27 H 1.09001 * 109.46930 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46754 * 179.97438 * 3 2 1 29 29 H 1.09006 * 109.47042 * 299.99463 * 3 2 1 30 30 H 1.08998 * 109.47544 * 59.99708 * 3 2 1 31 31 H 1.08997 * 109.47368 * 59.99893 * 4 2 1 32 32 H 1.09001 * 109.47283 * 299.99870 * 4 2 1 33 33 H 1.09001 * 109.46930 * 300.00086 * 5 4 2 34 34 H 1.08998 * 109.47361 * 179.97438 * 5 4 2 35 35 H 1.08999 * 109.47218 * 180.02562 * 6 5 4 36 36 H 1.08999 * 109.46838 * 59.99846 * 6 5 4 37 37 H 1.09001 * 109.47276 * 299.99881 * 7 6 5 38 38 H 1.08997 * 109.47173 * 179.97438 * 7 6 5 39 39 H 0.96996 * 120.00465 * 0.02562 * 16 15 13 40 40 H 1.09000 * 109.47423 * 34.29466 * 21 12 10 41 41 H 1.09001 * 109.46839 * 154.29424 * 21 12 10 42 42 H 0.96703 * 116.99940 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5701 -0.7207 -1.2495 6 6 4.0806 -1.4415 -0.0002 7 6 3.5705 -0.7202 1.2491 8 6 2.0405 -0.7209 1.2493 9 1 1.6776 -1.7486 1.2496 10 6 1.5381 -0.0098 2.4794 11 8 0.8664 0.9940 2.3679 12 7 1.8351 -0.4893 3.7035 13 6 2.4881 -1.6882 3.8301 14 1 3.3734 -1.7586 4.4447 15 6 2.0109 -2.8127 3.1679 16 7 2.7391 -3.9054 3.1201 17 14 0.3342 -2.7708 2.3455 18 1 -0.6992 -3.2383 3.3041 19 1 0.3440 -3.6595 1.1559 20 1 0.0246 -1.3813 1.9228 21 6 1.4602 0.2705 4.8986 22 6 2.5343 1.2810 5.2089 23 8 3.5124 1.3589 4.5037 24 8 2.4044 2.0945 6.2685 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6765 1.9564 0.8899 31 1 1.6767 -0.2075 -2.1392 32 1 1.6767 -1.7490 -1.2492 33 1 3.9330 0.3071 -1.2498 34 1 3.9334 -1.2350 -2.1392 35 1 5.1706 -1.4407 -0.0001 36 1 3.7176 -2.4693 0.0001 37 1 3.9335 0.3076 1.2488 38 1 3.9338 -1.2339 2.1391 39 1 3.6096 -3.9273 3.5474 40 1 0.5167 0.7863 4.7201 41 1 1.3479 -0.4110 5.7419 42 1 3.1194 2.7260 6.4275 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604532332.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:59 Heat of formation + Delta-G solvation = -120.102770 kcal Electronic energy + Delta-G solvation = -25330.150451 eV Core-core repulsion = 21889.556533 eV Total energy + Delta-G solvation = -3440.593919 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.48162 -39.50316 -37.39313 -35.62976 -34.96615 -32.42701 -32.20191 -30.61092 -28.04369 -26.79561 -25.91333 -24.07548 -22.91027 -21.38483 -20.47002 -19.61953 -18.00638 -17.63932 -17.60714 -16.11853 -15.80294 -15.25745 -15.02137 -14.79122 -14.27881 -13.94399 -13.74418 -13.49482 -13.06035 -12.93353 -12.49177 -12.39738 -12.23465 -11.85245 -11.64448 -11.45344 -11.13007 -11.05855 -10.98164 -10.88104 -10.66268 -10.36149 -10.22783 -10.12271 -9.97313 -9.79789 -9.65277 -9.33744 -9.11433 -8.90437 -8.32192 -7.91740 -6.83716 -4.31961 2.79014 3.06615 3.27230 3.35899 3.39461 3.96569 4.14094 4.37981 4.90973 5.20204 5.24299 5.37162 5.65168 5.76569 5.80852 5.84457 5.88778 5.96010 6.00400 6.05655 6.13441 6.15122 6.21217 6.29938 6.34074 6.42686 6.56337 6.63700 6.67045 6.69677 6.74053 6.83346 6.91689 6.98770 7.09409 7.21316 7.32750 7.55347 7.91757 8.41203 8.50192 8.63017 9.25670 9.63344 10.51306 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015422 B = 0.009513 C = 0.008006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.168123 B = 2942.540869 C = 3496.614788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.045 4.045 3 C -0.150 4.150 4 C -0.109 4.109 5 C -0.120 4.120 6 C -0.116 4.116 7 C -0.106 4.106 8 C -0.069 4.069 9 H 0.078 0.922 10 C 0.514 3.486 11 O -0.581 6.581 12 N -0.459 5.459 13 C -0.416 4.416 14 H 0.080 0.920 15 C 0.035 3.965 16 N -0.869 5.869 17 Si 1.022 2.978 18 H -0.292 1.292 19 H -0.276 1.276 20 H -0.248 1.248 21 C 0.117 3.883 22 C 0.460 3.540 23 O -0.504 6.504 24 O -0.527 6.527 25 H 0.086 0.914 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.049 0.951 29 H 0.038 0.962 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.095 0.905 39 H 0.277 0.723 40 H 0.106 0.894 41 H 0.114 0.886 42 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.217 5.937 -2.578 6.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.045 4.045 3 C -0.207 4.207 4 C -0.146 4.146 5 C -0.157 4.157 6 C -0.154 4.154 7 C -0.143 4.143 8 C -0.090 4.090 9 H 0.095 0.905 10 C 0.306 3.694 11 O -0.465 6.465 12 N -0.182 5.182 13 C -0.544 4.544 14 H 0.097 0.903 15 C -0.175 4.175 16 N -0.500 5.500 17 Si 0.849 3.151 18 H -0.220 1.220 19 H -0.202 1.202 20 H -0.173 1.173 21 C -0.008 4.008 22 C 0.300 3.700 23 O -0.390 6.390 24 O -0.339 6.339 25 H 0.105 0.895 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.114 0.886 39 H 0.088 0.912 40 H 0.124 0.876 41 H 0.132 0.868 42 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -2.611 5.227 -3.768 6.952 hybrid contribution 1.812 1.002 1.142 2.365 sum -0.799 6.229 -2.626 6.807 Atomic orbital electron populations 1.22174 0.94930 1.00922 1.02702 1.20279 0.95407 0.95569 0.93266 1.22168 1.00281 0.95640 1.02580 1.21623 0.95619 1.00231 0.97176 1.21598 0.95797 1.00586 0.97736 1.21523 0.99466 0.99860 0.94545 1.21477 0.93178 1.00436 0.99211 1.21193 0.97422 0.98591 0.91781 0.90488 1.20450 0.80120 0.83689 0.85153 1.90390 1.41919 1.27556 1.86624 1.43437 1.53885 1.19389 1.01446 1.20269 1.11045 0.85005 1.38049 0.90253 1.26502 1.03879 0.91146 0.95925 1.70797 1.12435 1.28042 1.38773 0.84638 0.75160 0.77917 0.77347 1.21969 1.20158 1.17294 1.20948 0.94108 0.92897 0.92896 1.24747 0.88323 0.80157 0.76782 1.90678 1.31706 1.67933 1.48664 1.84572 1.52006 1.48763 1.48528 0.89511 0.93968 0.93917 0.93210 0.94259 0.89651 0.92412 0.92307 0.92034 0.92869 0.92686 0.91812 0.92782 0.88642 0.91225 0.87635 0.86839 0.74412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 7.09 37.16 0.26 -2.51 16 2 C -0.04 -0.84 0.51 -154.51 -0.08 -0.92 16 3 C -0.15 -2.75 7.48 37.16 0.28 -2.48 16 4 C -0.11 -1.79 4.73 -26.73 -0.13 -1.92 16 5 C -0.12 -1.88 5.65 -26.73 -0.15 -2.04 16 6 C -0.12 -2.10 5.92 -26.73 -0.16 -2.26 16 7 C -0.11 -2.22 4.63 -26.73 -0.12 -2.34 16 8 C -0.07 -1.49 0.47 -91.77 -0.04 -1.53 16 9 H 0.08 1.75 2.59 -51.93 -0.13 1.61 16 10 C 0.51 11.82 3.77 -10.98 -0.04 11.78 16 11 O -0.58 -13.64 10.97 5.55 0.06 -13.58 16 12 N -0.46 -10.60 1.58 -116.10 -0.18 -10.78 16 13 C -0.42 -10.36 7.11 -14.93 -0.11 -10.47 16 14 H 0.08 2.15 8.06 -52.48 -0.42 1.72 16 15 C 0.04 0.89 4.39 -17.47 -0.08 0.82 16 16 N -0.87 -23.19 13.69 55.50 0.76 -22.43 16 17 Si 1.02 23.31 23.92 -169.99 -4.07 19.25 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.25 -5.42 2.53 56.52 0.14 -5.28 16 21 C 0.12 2.31 5.98 -5.20 -0.03 2.28 16 22 C 0.46 8.89 8.37 36.01 0.30 9.19 16 23 O -0.50 -11.50 17.10 -18.75 -0.32 -11.82 16 24 O -0.53 -7.88 13.42 -39.24 -0.53 -8.41 16 25 H 0.09 1.77 5.41 -51.93 -0.28 1.49 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.04 0.77 6.73 -51.93 -0.35 0.42 16 28 H 0.05 0.89 4.81 -51.93 -0.25 0.64 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.78 5.45 -51.93 -0.28 1.50 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.94 6.43 -51.93 -0.33 0.61 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.05 1.15 6.43 -51.93 -0.33 0.81 16 38 H 0.10 2.28 5.76 -51.93 -0.30 1.98 16 39 H 0.28 7.33 8.73 -40.82 -0.36 6.97 16 40 H 0.11 1.96 7.48 -51.93 -0.39 1.57 16 41 H 0.11 2.01 8.01 -51.93 -0.42 1.59 16 42 H 0.40 4.17 9.10 45.56 0.41 4.59 16 LS Contribution 305.48 15.07 4.60 4.60 Total: -1.00 -29.15 305.48 -5.21 -34.36 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -5.45 Total: 11.18 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -0.09 Total: -2.39 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.58 Total: -33.20 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -0.79 Total: -33.80 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -4.07 Total: 19.25 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.15 -5.21 -34.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604532332.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.741 kcal (2) G-P(sol) polarization free energy of solvation -29.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds