Wall clock time and date at job start Tue Mar 31 2020 06:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52990 * 109.47747 * 2 1 4 4 C 1.53006 * 109.47055 * 64.21416 * 3 2 1 5 5 C 1.53000 * 109.47269 * 184.21374 * 3 2 1 6 6 N 1.46504 * 109.47445 * 304.21383 * 3 2 1 7 7 C 1.46498 * 120.00255 * 130.84339 * 6 3 2 8 8 C 1.50697 * 109.46846 * 90.00172 * 7 6 3 9 9 H 1.08006 * 120.00494 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99949 * 179.97438 * 8 7 6 11 11 N 1.31520 * 120.00278 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00064 * 0.02562 * 10 8 7 13 13 H 1.48508 * 109.46904 * 89.99354 * 12 10 8 14 14 H 1.48496 * 109.47301 * 209.99575 * 12 10 8 15 15 H 1.48499 * 109.47038 * 329.99860 * 12 10 8 16 16 C 1.34779 * 119.99246 * 310.84895 * 6 3 2 17 17 O 1.21285 * 119.99720 * 176.65843 * 16 6 3 18 18 C 1.50699 * 120.00748 * 356.65121 * 16 6 3 19 19 H 1.09000 * 115.54567 * 330.55224 * 18 16 6 20 20 C 1.52991 * 117.50203 * 184.83795 * 18 16 6 21 21 C 1.52996 * 60.00342 * 252.51189 * 20 18 16 22 22 H 1.09001 * 117.51896 * 252.51855 * 21 20 18 23 23 C 1.50703 * 117.49733 * 107.48600 * 21 20 18 24 24 O 1.20825 * 120.00269 * 294.20075 * 23 21 20 25 25 O 1.34228 * 119.99365 * 114.19800 * 23 21 20 26 26 H 1.08989 * 109.48150 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46947 * 300.00364 * 1 2 3 28 28 H 1.09007 * 109.46906 * 59.99271 * 1 2 3 29 29 H 1.09008 * 109.46947 * 239.99636 * 2 1 3 30 30 H 1.09007 * 109.46906 * 120.00729 * 2 1 3 31 31 H 1.09000 * 109.46585 * 180.02562 * 4 3 2 32 32 H 1.08998 * 109.46960 * 299.99620 * 4 3 2 33 33 H 1.08998 * 109.47006 * 60.00021 * 4 3 2 34 34 H 1.09003 * 109.47041 * 297.50795 * 5 3 2 35 35 H 1.09003 * 109.47544 * 57.50908 * 5 3 2 36 36 H 1.08997 * 109.47366 * 177.51006 * 5 3 2 37 37 H 1.08995 * 109.46849 * 209.99874 * 7 6 3 38 38 H 1.09001 * 109.46973 * 330.00394 * 7 6 3 39 39 H 0.96996 * 119.99740 * 180.02562 * 11 10 8 40 40 H 1.08997 * 117.49853 * 0.02562 * 20 18 16 41 41 H 1.09004 * 117.50061 * 145.02224 * 20 18 16 42 42 H 0.96699 * 116.99575 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4423 0.0000 4 6 1.6185 2.1324 1.2989 5 6 3.5664 1.4435 -0.1060 6 7 1.4708 2.1618 -1.1422 7 6 0.8453 3.4718 -0.9449 8 6 1.8831 4.5528 -1.1035 9 1 2.9062 4.2904 -1.3291 10 6 1.5264 5.8771 -0.9616 11 7 2.4320 6.8206 -1.1004 12 14 -0.2433 6.3311 -0.5721 13 1 -0.4289 6.3808 0.9005 14 1 -0.5529 7.6611 -1.1553 15 1 -1.1548 5.3120 -1.1517 16 6 1.5224 1.6183 -2.3744 17 8 0.9980 2.1851 -3.3097 18 6 2.2318 0.3063 -2.5904 19 1 3.0601 0.1026 -1.9118 20 6 2.3541 -0.2024 -4.0281 21 6 1.3900 -0.8839 -3.0549 22 1 1.6646 -1.8706 -2.6821 23 6 -0.0850 -0.6544 -3.2617 24 8 -0.5517 0.4498 -3.1104 25 8 -0.8803 -1.6768 -3.6138 26 1 -0.3635 -1.0275 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5140 0.8900 31 1 1.9816 3.1601 1.2986 32 1 0.5312 2.1316 1.3744 33 1 2.0422 1.5972 2.1487 34 1 3.9916 0.9469 0.7663 35 1 3.8684 0.9132 -1.0092 36 1 3.9268 2.4712 -0.1505 37 1 0.0574 3.6132 -1.6846 38 1 0.4173 3.5229 0.0563 39 1 2.1810 7.7522 -1.0002 40 1 1.9219 0.4120 -4.8178 41 1 3.2633 -0.7409 -4.2958 42 1 -1.8193 -1.4808 -3.7353 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604895477.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:11 Heat of formation + Delta-G solvation = -75.047584 kcal Electronic energy + Delta-G solvation = -24863.146235 eV Core-core repulsion = 21424.506056 eV Total energy + Delta-G solvation = -3438.640179 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.92969 -39.39245 -37.10886 -36.08393 -35.60360 -33.05948 -31.65607 -30.04783 -28.78060 -26.67315 -25.61159 -23.94931 -23.17927 -21.78651 -20.79696 -20.06482 -18.63109 -17.65351 -16.84193 -16.41707 -15.97207 -15.41116 -15.23398 -14.74958 -14.51014 -14.12545 -13.88630 -13.42358 -13.20877 -12.81461 -12.66247 -12.44123 -12.08788 -12.06231 -11.91450 -11.57417 -11.44482 -11.35378 -11.16713 -11.11132 -10.76617 -10.66142 -10.49827 -10.33134 -10.30733 -10.15250 -9.97046 -9.71638 -9.38716 -8.85289 -8.50853 -7.47970 -6.01771 -3.98420 2.19209 2.89530 3.31251 3.32258 3.39947 3.47625 3.80414 4.09566 4.46947 4.65007 4.74148 4.82573 4.99279 5.13767 5.23235 5.29212 5.32507 5.43445 5.54913 5.64813 5.68880 5.81368 5.88135 6.00875 6.01664 6.08616 6.14382 6.26563 6.31758 6.35893 6.50625 6.66000 6.73850 6.82013 6.88021 7.17709 7.57341 7.72611 8.05590 8.46606 8.58071 9.02454 9.23756 9.60754 11.11596 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.018702 B = 0.006821 C = 0.006314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.784262 B = 4103.733969 C = 4433.407342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.150 4.150 3 C 0.170 3.830 4 C -0.152 4.152 5 C -0.167 4.167 6 N -0.578 5.578 7 C 0.215 3.785 8 C -0.520 4.520 9 H 0.075 0.925 10 C 0.072 3.928 11 N -0.900 5.900 12 Si 0.869 3.131 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.263 1.263 16 C 0.549 3.451 17 O -0.518 6.518 18 C -0.160 4.160 19 H 0.146 0.854 20 C -0.123 4.123 21 C -0.150 4.150 22 H 0.138 0.862 23 C 0.489 3.511 24 O -0.466 6.466 25 O -0.522 6.522 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.039 0.961 38 H 0.029 0.971 39 H 0.263 0.737 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.065 -19.306 1.276 19.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.188 4.188 3 C 0.084 3.916 4 C -0.210 4.210 5 C -0.225 4.225 6 N -0.310 5.310 7 C 0.094 3.906 8 C -0.558 4.558 9 H 0.093 0.907 10 C -0.130 4.130 11 N -0.539 5.539 12 Si 0.696 3.304 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.188 1.188 16 C 0.335 3.665 17 O -0.394 6.394 18 C -0.180 4.180 19 H 0.163 0.837 20 C -0.161 4.161 21 C -0.169 4.169 22 H 0.155 0.845 23 C 0.330 3.670 24 O -0.350 6.350 25 O -0.334 6.334 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -1.066 -18.518 0.894 18.570 hybrid contribution -1.426 0.416 0.299 1.515 sum -2.491 -18.102 1.193 18.311 Atomic orbital electron populations 1.21901 0.95781 1.00510 1.03437 1.22435 0.96954 0.96607 1.02807 1.20272 0.92753 0.90927 0.87668 1.22113 1.01566 1.02575 0.94703 1.22485 0.95275 1.03816 1.00887 1.47741 1.57839 1.20072 1.05308 1.19676 0.94581 0.79540 0.96758 1.21370 0.96614 0.89720 1.48126 0.90733 1.24827 0.96891 0.96328 0.94930 1.69898 1.33446 1.00144 1.50426 0.86945 0.86335 0.78460 0.78685 1.20202 1.21089 1.18758 1.18734 0.80000 0.84462 0.83327 1.90652 1.45075 1.62524 1.41131 1.23176 1.01484 0.93525 0.99833 0.83678 1.23184 0.99016 1.00510 0.93362 1.21689 0.87197 0.99186 1.08873 0.84457 1.22272 0.88795 0.82066 0.73909 1.90945 1.75422 1.24116 1.44551 1.84456 1.25013 1.42014 1.81935 0.93867 0.92692 0.91108 0.90258 0.91474 0.89850 0.92265 0.92491 0.92303 0.92547 0.90536 0.94309 0.95310 0.92745 0.86754 0.86641 0.73362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.23 37.16 0.34 -1.95 16 2 C -0.15 -1.99 4.43 -26.74 -0.12 -2.11 16 3 C 0.17 2.77 0.70 -131.82 -0.09 2.68 16 4 C -0.15 -2.47 6.89 37.16 0.26 -2.22 16 5 C -0.17 -2.48 8.46 37.16 0.31 -2.17 16 6 N -0.58 -12.12 1.69 -160.18 -0.27 -12.39 16 7 C 0.21 5.40 3.60 -5.20 -0.02 5.38 16 8 C -0.52 -14.94 9.64 -34.44 -0.33 -15.27 16 9 H 0.07 2.33 8.04 -52.48 -0.42 1.90 16 10 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 11 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 12 Si 0.87 22.15 27.47 -169.99 -4.67 17.48 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 15 H -0.26 -6.70 6.54 56.52 0.37 -6.33 16 16 C 0.55 11.52 4.58 -10.99 -0.05 11.47 16 17 O -0.52 -13.28 13.74 -18.25 -0.25 -13.53 16 18 C -0.16 -2.37 3.38 -91.78 -0.31 -2.68 16 19 H 0.15 1.81 3.80 -51.93 -0.20 1.61 16 20 C -0.12 -1.55 9.75 -26.74 -0.26 -1.81 16 21 C -0.15 -1.85 5.19 -91.77 -0.48 -2.32 16 22 H 0.14 1.21 8.14 -51.93 -0.42 0.79 16 23 C 0.49 7.17 7.51 36.01 0.27 7.44 16 24 O -0.47 -9.02 11.80 -26.63 -0.31 -9.34 16 25 O -0.52 -5.81 13.42 -39.25 -0.53 -6.33 16 26 H 0.04 0.53 8.14 -51.94 -0.42 0.11 16 27 H 0.05 0.78 6.54 -51.92 -0.34 0.44 16 28 H 0.07 1.25 4.57 -51.93 -0.24 1.01 16 29 H 0.08 0.97 3.22 -51.92 -0.17 0.80 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.59 7.14 -51.93 -0.37 1.22 16 32 H 0.06 0.97 5.80 -51.93 -0.30 0.67 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.76 4.99 -51.93 -0.26 0.50 16 36 H 0.08 1.38 8.13 -51.93 -0.42 0.96 16 37 H 0.04 1.10 6.43 -51.93 -0.33 0.76 16 38 H 0.03 0.69 5.08 -51.93 -0.26 0.42 16 39 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 40 H 0.11 1.71 7.68 -51.93 -0.40 1.31 16 41 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.41 3.03 9.10 45.56 0.41 3.44 16 LS Contribution 319.34 15.07 4.81 4.81 Total: -1.00 -36.71 319.34 -6.02 -42.73 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -5.00 Total: 5.27 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -0.57 Total: -1.51 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.50 Total: -39.57 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -1.09 Total: -29.20 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -36.71 -6.02 -42.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604895477.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.322 kcal (2) G-P(sol) polarization free energy of solvation -36.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds