Wall clock time and date at job start Tue Mar 31 2020 06:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47042 * 2 1 4 4 C 1.52999 * 109.47042 * 179.97438 * 3 2 1 5 5 H 1.08998 * 110.81658 * 51.67121 * 4 3 2 6 6 C 1.54879 * 110.75889 * 288.33036 * 4 3 2 7 7 C 1.54266 * 104.19907 * 203.74139 * 6 4 3 8 8 C 1.53883 * 106.59584 * 23.61132 * 7 6 4 9 9 C 1.54257 * 106.59670 * 0.02562 * 8 7 6 10 10 H 1.08998 * 110.49208 * 95.20290 * 9 8 7 11 11 C 1.50699 * 110.48626 * 217.71177 * 9 8 7 12 12 O 1.21299 * 120.00380 * 88.10278 * 11 9 8 13 13 N 1.34775 * 119.99898 * 268.10674 * 11 9 8 14 14 C 1.37100 * 120.00087 * 176.23355 * 13 11 9 15 15 H 1.08001 * 120.00216 * 9.90825 * 14 13 11 16 16 C 1.38956 * 120.00154 * 189.91301 * 14 13 11 17 17 N 1.31410 * 119.99602 * 25.27739 * 16 14 13 18 18 Si 1.86794 * 119.99951 * 204.99975 * 16 14 13 19 19 H 1.48498 * 109.47360 * 60.00133 * 18 16 14 20 20 H 1.48503 * 109.47055 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47232 * 299.99999 * 18 16 14 22 22 C 1.46503 * 120.00217 * 356.22931 * 13 11 9 23 23 C 1.50701 * 109.47075 * 90.57200 * 22 13 11 24 24 O 1.20825 * 119.99946 * 0.02562 * 23 22 13 25 25 O 1.34223 * 119.99897 * 180.02562 * 23 22 13 26 26 H 1.09008 * 109.46840 * 299.99915 * 1 2 3 27 27 H 1.08999 * 109.47640 * 59.99056 * 1 2 3 28 28 H 1.09003 * 109.47088 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46804 * 240.00831 * 2 1 3 30 30 H 1.09000 * 109.47193 * 120.00314 * 2 1 3 31 31 H 1.09008 * 109.47234 * 60.00326 * 3 2 1 32 32 H 1.09000 * 109.47383 * 300.00198 * 3 2 1 33 33 H 1.09002 * 110.48750 * 85.06431 * 6 4 3 34 34 H 1.08998 * 110.59966 * 322.47712 * 6 4 3 35 35 H 1.08998 * 110.03513 * 264.32941 * 7 6 4 36 36 H 1.09001 * 110.03556 * 142.89248 * 7 6 4 37 37 H 1.08998 * 110.02951 * 240.71292 * 8 7 6 38 38 H 1.09002 * 110.06775 * 119.30943 * 8 7 6 39 39 H 0.97005 * 119.99602 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.47327 * 210.57311 * 22 13 11 41 41 H 1.08994 * 109.46741 * 330.57111 * 22 13 11 42 42 H 0.96703 * 116.99700 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9577 0.8105 -0.7983 6 6 4.1183 0.9872 1.3757 7 6 5.5325 1.6001 1.4409 8 6 5.5329 2.8071 0.4863 9 6 4.1188 2.8858 -0.1250 10 1 3.4981 3.5831 0.4376 11 6 4.1922 3.2972 -1.5729 12 8 4.3228 2.4557 -2.4367 13 7 4.1130 4.6002 -1.9080 14 6 4.2571 4.9814 -3.2171 15 1 4.2737 4.2355 -3.9980 16 6 4.3819 6.3273 -3.5391 17 7 4.8522 7.1744 -2.6513 18 14 3.8885 6.9312 -5.2365 19 1 2.4510 6.6390 -5.4674 20 1 4.1171 8.3957 -5.3267 21 1 4.7058 6.2389 -6.2651 22 6 3.8726 5.6094 -0.8735 23 6 5.1916 6.1006 -0.3350 24 8 6.2262 5.6540 -0.7709 25 8 5.2170 7.0343 0.6289 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9564 0.8901 32 1 1.6766 1.9564 -0.8899 33 1 4.1714 -0.1004 1.4242 34 1 3.4972 1.3743 2.1835 35 1 6.2721 0.8679 1.1171 36 1 5.7510 1.9279 2.4572 37 1 6.2727 2.6605 -0.3007 38 1 5.7519 3.7208 1.0387 39 1 4.9390 8.1140 -2.8760 40 1 3.3213 6.4458 -1.3030 41 1 3.2912 5.1683 -0.0640 42 1 6.0868 7.3183 0.9422 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605229528.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:34 Heat of formation + Delta-G solvation = -141.061361 kcal Electronic energy + Delta-G solvation = -24077.634284 eV Core-core repulsion = 20636.131532 eV Total energy + Delta-G solvation = -3441.502751 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.76074 -38.66178 -37.06278 -35.14485 -34.39593 -34.22846 -31.77584 -29.50761 -28.84750 -27.59899 -25.16477 -24.50445 -21.50643 -21.12481 -20.75353 -19.67991 -18.30833 -17.08116 -16.96466 -16.41983 -15.53108 -15.19523 -14.87098 -14.79236 -14.36581 -14.23108 -13.66966 -13.48708 -13.23702 -12.77398 -12.56854 -12.24784 -11.96266 -11.94112 -11.73839 -11.58033 -11.23261 -11.06506 -10.94771 -10.88339 -10.61868 -10.48640 -10.36889 -10.26806 -10.18028 -10.11693 -10.03448 -9.91978 -9.53090 -8.99665 -8.39834 -7.92884 -6.46455 -3.83080 3.16563 3.24220 3.28672 3.52231 3.70358 4.07208 4.27543 4.71081 4.81773 4.93396 5.08890 5.15944 5.22382 5.26703 5.40892 5.61195 5.67110 5.74866 5.85046 5.89147 5.91711 5.96196 6.00446 6.02745 6.11836 6.18053 6.24415 6.26656 6.36640 6.44896 6.49310 6.54880 6.59896 6.67889 6.72381 6.89984 7.53480 7.58887 7.99841 8.39030 9.10977 9.11793 9.34925 9.88700 10.62727 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.016444 B = 0.006323 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.362624 B = 4427.054167 C = 5421.214106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.110 4.110 4 C -0.074 4.074 5 H 0.091 0.909 6 C -0.117 4.117 7 C -0.122 4.122 8 C -0.102 4.102 9 C -0.107 4.107 10 H 0.079 0.921 11 C 0.468 3.532 12 O -0.576 6.576 13 N -0.432 5.432 14 C -0.305 4.305 15 H 0.109 0.891 16 C 0.030 3.970 17 N -0.880 5.880 18 Si 0.926 3.074 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.146 3.854 23 C 0.493 3.507 24 O -0.500 6.500 25 O -0.537 6.537 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.271 0.729 40 H 0.122 0.878 41 H 0.078 0.922 42 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.002 -5.296 10.361 12.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.148 4.148 4 C -0.093 4.093 5 H 0.109 0.891 6 C -0.155 4.155 7 C -0.159 4.159 8 C -0.140 4.140 9 C -0.128 4.128 10 H 0.098 0.902 11 C 0.257 3.743 12 O -0.459 6.459 13 N -0.151 5.151 14 C -0.432 4.432 15 H 0.126 0.874 16 C -0.173 4.173 17 N -0.520 5.520 18 Si 0.753 3.247 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.199 1.199 22 C 0.019 3.981 23 C 0.333 3.667 24 O -0.385 6.385 25 O -0.349 6.349 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.140 0.860 41 H 0.096 0.904 42 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -4.981 -5.763 9.624 12.274 hybrid contribution 0.633 1.027 -0.570 1.334 sum -4.349 -4.736 9.055 11.105 Atomic orbital electron populations 1.21780 0.96374 1.01043 1.01711 1.21507 0.95289 0.97320 1.01804 1.21588 0.94865 0.96467 1.01849 1.22037 0.94539 0.95316 0.97389 0.89056 1.22419 0.96005 0.99808 0.97261 1.22123 0.97302 0.97518 0.98985 1.21936 0.96097 0.97639 0.98364 1.22160 0.97713 0.97786 0.95160 0.90245 1.19884 0.81998 0.82729 0.89663 1.90503 1.54203 1.50212 1.51016 1.43525 1.61718 1.03399 1.06501 1.19673 1.48466 0.92427 0.82604 0.87363 1.25151 0.96250 0.96063 0.99804 1.69755 1.41153 1.04623 1.36475 0.85990 0.79413 0.77260 0.82064 1.19888 1.21070 1.19871 1.20747 0.91542 0.94720 0.91099 1.23681 0.93264 0.75302 0.74484 1.90596 1.35265 1.56945 1.55716 1.84522 1.38969 1.57179 1.54186 0.93018 0.92729 0.93232 0.92001 0.92311 0.92385 0.91676 0.91992 0.91886 0.92053 0.92258 0.91165 0.92266 0.91859 0.85977 0.90423 0.75382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 37.16 0.37 -1.26 16 2 C -0.12 -1.49 5.83 -26.73 -0.16 -1.64 16 3 C -0.11 -1.57 4.71 -26.73 -0.13 -1.70 16 4 C -0.07 -1.19 2.16 -88.62 -0.19 -1.38 16 5 H 0.09 1.70 7.26 -51.93 -0.38 1.32 16 6 C -0.12 -1.54 5.69 -25.08 -0.14 -1.68 16 7 C -0.12 -1.71 6.80 -25.61 -0.17 -1.88 16 8 C -0.10 -1.82 6.20 -25.61 -0.16 -1.98 16 9 C -0.11 -1.98 2.12 -90.10 -0.19 -2.17 16 10 H 0.08 1.35 5.81 -51.93 -0.30 1.05 16 11 C 0.47 11.27 6.62 -10.99 -0.07 11.20 16 12 O -0.58 -15.77 15.45 5.54 0.09 -15.68 16 13 N -0.43 -10.87 2.11 -116.09 -0.25 -11.12 16 14 C -0.30 -8.42 9.42 -14.93 -0.14 -8.56 16 15 H 0.11 3.17 7.31 -52.49 -0.38 2.78 16 16 C 0.03 0.77 4.87 -17.47 -0.09 0.69 16 17 N -0.88 -23.05 8.88 55.50 0.49 -22.55 16 18 Si 0.93 20.66 29.62 -169.99 -5.04 15.62 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 20 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 C 0.15 3.18 5.05 -5.19 -0.03 3.15 16 23 C 0.49 10.91 5.91 36.01 0.21 11.13 16 24 O -0.50 -12.89 16.48 -18.75 -0.31 -13.20 16 25 O -0.54 -9.75 13.42 -39.24 -0.53 -10.27 16 26 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.65 7.65 -51.93 -0.40 0.25 16 31 H 0.06 0.74 7.99 -51.92 -0.41 0.33 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 34 H 0.06 0.74 7.94 -51.93 -0.41 0.33 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.07 1.47 7.83 -51.93 -0.41 1.06 16 38 H 0.06 1.04 7.60 -51.93 -0.39 0.65 16 39 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 40 H 0.12 2.77 6.46 -51.93 -0.34 2.43 16 41 H 0.08 1.40 5.86 -51.93 -0.30 1.10 16 42 H 0.39 5.49 9.10 45.56 0.41 5.91 16 LS Contribution 336.78 15.07 5.08 5.08 Total: -1.00 -32.22 336.78 -7.17 -39.39 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -5.83 Total: 8.84 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -0.88 Total: 3.89 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.25 Total: -33.67 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -0.75 Total: -39.16 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.04 Total: 15.62 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.22 -7.17 -39.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605229528.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.667 kcal (2) G-P(sol) polarization free energy of solvation -32.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds