Wall clock time and date at job start Tue Mar 31 2020 06:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47131 * 2 1 4 4 C 1.53002 * 109.47371 * 180.02562 * 3 2 1 5 5 H 1.08999 * 110.01315 * 55.39864 * 4 3 2 6 6 C 1.54260 * 110.02972 * 294.01217 * 4 3 2 7 7 C 1.54897 * 104.19115 * 217.05486 * 6 4 3 8 8 C 1.54886 * 102.74901 * 37.94616 * 7 6 4 9 9 C 1.53872 * 110.07134 * 176.81893 * 4 3 2 10 10 H 1.08996 * 110.02968 * 238.64071 * 9 4 3 11 11 C 1.50707 * 110.03432 * 0.02562 * 9 4 3 12 12 O 1.21289 * 120.00025 * 68.92890 * 11 9 4 13 13 N 1.34775 * 119.99707 * 248.92758 * 11 9 4 14 14 C 1.37105 * 119.99614 * 184.19145 * 13 11 9 15 15 H 1.08003 * 119.99792 * 358.45870 * 14 13 11 16 16 C 1.38945 * 119.99808 * 178.46012 * 14 13 11 17 17 N 1.31404 * 120.00352 * 33.14433 * 16 14 13 18 18 Si 1.86804 * 119.99798 * 213.14436 * 16 14 13 19 19 H 1.48499 * 109.47083 * 94.99625 * 18 16 14 20 20 H 1.48498 * 109.47274 * 214.99721 * 18 16 14 21 21 H 1.48494 * 109.47106 * 334.99971 * 18 16 14 22 22 C 1.46500 * 120.00407 * 4.19370 * 13 11 9 23 23 C 1.50699 * 109.47029 * 88.47458 * 22 13 11 24 24 O 1.20822 * 120.00233 * 0.02562 * 23 22 13 25 25 O 1.34235 * 119.99852 * 180.02562 * 23 22 13 26 26 H 1.09001 * 109.47161 * 299.99564 * 1 2 3 27 27 H 1.08997 * 109.47481 * 59.99799 * 1 2 3 28 28 H 1.09004 * 109.46716 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47161 * 240.00436 * 2 1 3 30 30 H 1.08997 * 109.47481 * 120.00201 * 2 1 3 31 31 H 1.09001 * 109.46742 * 60.00180 * 3 2 1 32 32 H 1.08997 * 109.47102 * 300.00433 * 3 2 1 33 33 H 1.08999 * 110.49012 * 335.72701 * 6 4 3 34 34 H 1.08994 * 110.48942 * 98.38106 * 6 4 3 35 35 H 1.09008 * 110.75423 * 156.25396 * 7 6 4 36 36 H 1.08994 * 110.75605 * 279.62638 * 7 6 4 37 37 H 1.08997 * 110.48473 * 203.38113 * 8 7 6 38 38 H 1.08994 * 110.60354 * 80.78639 * 8 7 6 39 39 H 0.97001 * 120.00257 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.47127 * 208.47333 * 22 13 11 41 41 H 1.08997 * 109.46842 * 328.47892 * 22 13 11 42 42 H 0.96703 * 116.99304 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9427 0.8612 -0.8439 6 6 4.0989 0.8527 1.3229 7 6 5.3550 1.7011 1.6417 8 6 4.9295 3.1223 1.1968 9 6 4.0980 2.8857 -0.0809 10 1 4.7263 3.0048 -0.9635 11 6 2.9452 3.8550 -0.1335 12 8 2.2389 4.0108 0.8402 13 7 2.6992 4.5488 -1.2624 14 6 1.7052 5.4928 -1.2840 15 1 1.1029 5.6629 -0.4038 16 6 1.4727 6.2306 -2.4382 17 7 1.6635 5.6833 -3.6175 18 14 0.8889 8.0007 -2.3135 19 1 2.0574 8.9139 -2.3902 20 1 -0.0432 8.2945 -3.4316 21 1 0.1884 8.2009 -1.0195 22 6 3.4939 4.2943 -2.4666 23 6 2.8536 3.1895 -3.2668 24 8 1.8374 2.6685 -2.8720 25 8 3.4122 2.7841 -4.4181 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.3555 0.9603 2.1127 34 1 4.3694 -0.1951 1.1925 35 1 5.5747 1.6801 2.7092 36 1 6.2116 1.3555 1.0631 37 1 5.8059 3.7308 0.9743 38 1 4.3207 3.5986 1.9653 39 1 1.5008 6.1982 -4.4233 40 1 3.5394 5.2007 -3.0702 41 1 4.5028 3.9975 -2.1800 42 1 2.9648 2.0726 -4.8964 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605229531.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:37 Heat of formation + Delta-G solvation = -133.045434 kcal Electronic energy + Delta-G solvation = -24642.445565 eV Core-core repulsion = 21201.290410 eV Total energy + Delta-G solvation = -3441.155155 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.97301 -38.80955 -36.89413 -35.20351 -34.48189 -33.93057 -31.82944 -29.36556 -28.80672 -27.63311 -25.01388 -24.36768 -21.31217 -21.21876 -20.75303 -19.91486 -17.84509 -17.21140 -16.93942 -16.47231 -15.64263 -15.16713 -14.90622 -14.53026 -14.42593 -14.22602 -13.72800 -13.56486 -13.15327 -12.61926 -12.38263 -12.16515 -11.85303 -11.79377 -11.64668 -11.33811 -11.25839 -10.91467 -10.81839 -10.68034 -10.52468 -10.46971 -10.40471 -10.31083 -10.19167 -10.12535 -9.81043 -9.76010 -9.52723 -8.87820 -8.30934 -7.99509 -6.52483 -3.78073 3.12701 3.26021 3.31808 3.37600 3.63766 4.04042 4.22334 4.70582 4.92881 4.94412 5.13746 5.17236 5.45404 5.54980 5.62767 5.66326 5.72000 5.86828 5.91743 5.98166 6.01284 6.06668 6.17189 6.23388 6.26508 6.28924 6.36359 6.44553 6.51938 6.57650 6.61105 6.65885 6.73370 6.74788 7.04983 7.21588 7.53111 7.54301 8.00067 8.38357 8.97541 9.10974 9.33779 9.89785 10.55765 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.016219 B = 0.006941 C = 0.006454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.976087 B = 4033.136763 C = 4337.675322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.135 4.135 4 C -0.068 4.068 5 H 0.062 0.938 6 C -0.115 4.115 7 C -0.123 4.123 8 C -0.108 4.108 9 C -0.112 4.112 10 H 0.075 0.925 11 C 0.472 3.528 12 O -0.573 6.573 13 N -0.434 5.434 14 C -0.307 4.307 15 H 0.112 0.888 16 C 0.033 3.967 17 N -0.870 5.870 18 Si 0.914 3.086 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.268 1.268 22 C 0.128 3.872 23 C 0.485 3.515 24 O -0.501 6.501 25 O -0.533 6.533 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.271 0.729 40 H 0.140 0.860 41 H 0.081 0.919 42 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.335 -7.521 1.588 10.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.173 4.173 4 C -0.087 4.087 5 H 0.081 0.919 6 C -0.153 4.153 7 C -0.160 4.160 8 C -0.146 4.146 9 C -0.134 4.134 10 H 0.094 0.906 11 C 0.262 3.738 12 O -0.456 6.456 13 N -0.153 5.153 14 C -0.433 4.433 15 H 0.129 0.871 16 C -0.170 4.170 17 N -0.509 5.509 18 Si 0.741 3.259 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.193 1.193 22 C 0.002 3.998 23 C 0.325 3.675 24 O -0.387 6.387 25 O -0.344 6.344 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.157 0.843 41 H 0.098 0.902 42 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 6.837 -7.190 2.213 10.166 hybrid contribution -0.688 0.322 -0.843 1.135 sum 6.149 -6.868 1.370 9.320 Atomic orbital electron populations 1.21727 0.96406 1.00282 1.02204 1.21475 0.95600 0.97896 1.00391 1.22160 0.93529 0.95963 1.05604 1.21541 0.96699 0.93341 0.97110 0.91934 1.22434 0.97115 0.98104 0.97613 1.22473 0.97551 0.95658 1.00337 1.22288 0.98612 0.96741 0.97000 1.22032 0.96506 0.95533 0.99324 0.90634 1.19699 0.87421 0.82539 0.84189 1.90487 1.51410 1.67344 1.36395 1.43651 1.31199 1.33767 1.06654 1.19717 1.13968 1.09562 1.00074 0.87076 1.25120 0.97585 1.00131 0.94180 1.70055 1.47570 1.35495 0.97821 0.86092 0.78374 0.83197 0.78261 1.20322 1.21293 1.19284 1.21222 0.92364 0.98025 0.88216 1.24120 0.83194 0.81688 0.78462 1.90558 1.23687 1.54963 1.69480 1.84549 1.57489 1.55057 1.37275 0.92971 0.92521 0.93774 0.93182 0.93034 0.90178 0.88874 0.91338 0.92360 0.91917 0.91964 0.92057 0.90172 0.91918 0.84259 0.90158 0.75228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.91 37.16 0.37 -2.04 16 2 C -0.12 -1.91 5.77 -26.73 -0.15 -2.06 16 3 C -0.14 -2.67 3.33 -26.73 -0.09 -2.76 16 4 C -0.07 -1.17 2.95 -89.51 -0.26 -1.43 16 5 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 6 C -0.12 -1.67 5.44 -25.07 -0.14 -1.81 16 7 C -0.12 -1.63 6.91 -24.74 -0.17 -1.80 16 8 C -0.11 -1.74 6.32 -25.07 -0.16 -1.90 16 9 C -0.11 -2.07 2.95 -90.65 -0.27 -2.34 16 10 H 0.08 1.29 5.40 -51.93 -0.28 1.01 16 11 C 0.47 11.04 4.62 -10.98 -0.05 10.99 16 12 O -0.57 -15.16 13.84 5.55 0.08 -15.09 16 13 N -0.43 -10.66 2.12 -116.09 -0.25 -10.90 16 14 C -0.31 -8.32 9.41 -14.93 -0.14 -8.46 16 15 H 0.11 3.23 7.35 -52.48 -0.39 2.85 16 16 C 0.03 0.84 4.85 -17.47 -0.08 0.75 16 17 N -0.87 -22.24 9.69 55.50 0.54 -21.70 16 18 Si 0.91 20.23 29.66 -169.99 -5.04 15.19 16 19 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 C 0.13 2.76 5.04 -5.19 -0.03 2.73 16 23 C 0.48 10.47 7.04 36.01 0.25 10.72 16 24 O -0.50 -12.36 14.71 -18.75 -0.28 -12.64 16 25 O -0.53 -9.41 13.42 -39.27 -0.53 -9.93 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.76 7.44 -51.93 -0.39 0.37 16 31 H 0.08 1.78 6.29 -51.93 -0.33 1.46 16 32 H 0.09 2.19 4.70 -51.93 -0.24 1.94 16 33 H 0.07 1.05 7.79 -51.93 -0.40 0.65 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 1.46 7.26 -51.93 -0.38 1.08 16 39 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 40 H 0.14 3.17 5.75 -51.93 -0.30 2.87 16 41 H 0.08 1.44 5.71 -51.93 -0.30 1.14 16 42 H 0.39 5.27 9.10 45.56 0.41 5.68 16 LS Contribution 327.70 15.07 4.94 4.94 Total: -1.00 -30.88 327.70 -6.98 -37.87 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -5.52 Total: 11.66 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -0.92 Total: 0.60 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.29 Total: -32.61 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -0.73 Total: -37.66 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.04 Total: 15.19 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.88 -6.98 -37.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605229531.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.178 kcal (2) G-P(sol) polarization free energy of solvation -30.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds