Wall clock time and date at job start Tue Mar 31 2020 06:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47159 * 2 1 4 4 C 1.52998 * 109.47159 * 180.02562 * 3 2 1 5 5 H 1.08993 * 110.81775 * 303.11765 * 4 3 2 6 6 C 1.54889 * 110.75443 * 66.45847 * 4 3 2 7 7 C 1.54268 * 104.19647 * 156.25598 * 6 4 3 8 8 C 1.53875 * 106.59708 * 336.38701 * 7 6 4 9 9 C 1.54266 * 106.60086 * 0.02562 * 8 7 6 10 10 H 1.09005 * 110.48260 * 264.80135 * 9 8 7 11 11 C 1.50699 * 110.49052 * 142.28945 * 9 8 7 12 12 O 1.21297 * 119.99413 * 266.91390 * 11 9 8 13 13 N 1.34771 * 120.00218 * 86.91402 * 11 9 8 14 14 C 1.37095 * 120.00106 * 184.52024 * 13 11 9 15 15 H 1.08007 * 120.00156 * 21.49333 * 14 13 11 16 16 C 1.38945 * 120.00285 * 201.49442 * 14 13 11 17 17 N 1.31412 * 119.99994 * 8.91829 * 16 14 13 18 18 Si 1.86801 * 120.00270 * 188.91617 * 16 14 13 19 19 H 1.48501 * 109.46973 * 89.99920 * 18 16 14 20 20 H 1.48501 * 109.47253 * 210.00210 * 18 16 14 21 21 H 1.48497 * 109.46987 * 329.99889 * 18 16 14 22 22 C 1.46502 * 120.00016 * 4.51864 * 13 11 9 23 23 C 1.50696 * 109.47129 * 84.16906 * 22 13 11 24 24 O 1.20819 * 120.00214 * 0.02562 * 23 22 13 25 25 O 1.34228 * 119.99857 * 179.97438 * 23 22 13 26 26 H 1.09011 * 109.46878 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47143 * 299.99463 * 1 2 3 28 28 H 1.08997 * 109.47778 * 59.99726 * 1 2 3 29 29 H 1.09000 * 109.47143 * 240.00537 * 2 1 3 30 30 H 1.08995 * 109.47270 * 120.00373 * 2 1 3 31 31 H 1.09000 * 109.46654 * 60.00238 * 3 2 1 32 32 H 1.08997 * 109.46999 * 300.00751 * 3 2 1 33 33 H 1.09001 * 110.48748 * 37.57478 * 6 4 3 34 34 H 1.08994 * 110.48544 * 274.93111 * 6 4 3 35 35 H 1.09002 * 110.03454 * 95.66828 * 7 6 4 36 36 H 1.08998 * 110.03136 * 217.05984 * 7 6 4 37 37 H 1.09004 * 110.03343 * 119.28577 * 8 7 6 38 38 H 1.09003 * 110.03336 * 240.66739 * 8 7 6 39 39 H 0.97002 * 120.00653 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.46926 * 204.17571 * 22 13 11 41 41 H 1.09004 * 109.47184 * 324.16793 * 22 13 11 42 42 H 0.96696 * 117.00143 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9577 0.8857 0.8524 6 6 4.1183 0.8642 -1.3288 7 6 5.5324 1.4687 -1.4494 8 6 5.5328 2.7573 -0.6085 9 6 4.1190 2.8906 -0.0056 10 1 3.4976 3.5336 -0.6290 11 6 4.1933 3.4320 1.3988 12 8 4.2339 2.6694 2.3412 13 7 4.2146 4.7632 1.6076 14 6 4.3755 5.2555 2.8770 15 1 4.8218 4.6386 3.6429 16 6 3.9643 6.5481 3.1782 17 7 3.2658 7.2361 2.3031 18 14 4.4043 7.3080 4.8269 19 1 5.7058 8.0141 4.7149 20 1 3.3492 8.2746 5.2239 21 1 4.5076 6.2392 5.8527 22 6 4.0659 5.6843 0.4781 23 6 2.6020 5.8822 0.1806 24 8 1.7683 5.3126 0.8442 25 8 2.2241 6.6919 -0.8210 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6766 1.9562 0.8900 32 1 1.6765 1.9563 -0.8899 33 1 3.4964 1.1781 -2.1671 34 1 4.1714 -0.2233 -1.2782 35 1 6.2721 0.7689 -1.0605 36 1 5.7511 1.7021 -2.4915 37 1 6.2726 2.6829 0.1885 38 1 5.7521 3.6167 -1.2421 39 1 2.9784 8.1384 2.5134 40 1 4.5186 6.6435 0.7295 41 1 4.5618 5.2673 -0.3985 42 1 1.2741 6.7876 -0.9736 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605229534.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:41 Heat of formation + Delta-G solvation = -145.736404 kcal Electronic energy + Delta-G solvation = -24165.405138 eV Core-core repulsion = 20723.699662 eV Total energy + Delta-G solvation = -3441.705476 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.76345 -38.69414 -37.05115 -35.14887 -34.40613 -34.19863 -31.71978 -29.46994 -28.86739 -27.57791 -25.13001 -24.47054 -21.50623 -21.21906 -20.62139 -19.63105 -18.35854 -17.15355 -16.85826 -16.42634 -15.57006 -15.14632 -14.92017 -14.72755 -14.40112 -14.17612 -13.66545 -13.44723 -13.26046 -12.74498 -12.57394 -12.29068 -11.95605 -11.84946 -11.57415 -11.39908 -11.27281 -11.11023 -10.98184 -10.87605 -10.55361 -10.41316 -10.38483 -10.36287 -10.21349 -10.14708 -10.00981 -9.91869 -9.57351 -9.02963 -8.40185 -7.85540 -6.39247 -3.92760 3.15540 3.24626 3.30295 3.49421 3.71349 4.08982 4.28497 4.73613 4.82268 4.93822 5.09603 5.17178 5.26614 5.33172 5.45709 5.67454 5.72286 5.79805 5.85505 5.91697 5.93930 5.98024 5.99147 6.07720 6.15770 6.17485 6.23330 6.31889 6.37565 6.44844 6.52746 6.56139 6.59601 6.72157 6.79535 6.92247 7.51769 7.55824 8.04733 8.40974 9.08179 9.12807 9.34112 9.89282 10.68704 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.017004 B = 0.005970 C = 0.005801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.281770 B = 4689.234546 C = 4825.691830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.109 4.109 4 C -0.071 4.071 5 H 0.090 0.910 6 C -0.119 4.119 7 C -0.120 4.120 8 C -0.112 4.112 9 C -0.105 4.105 10 H 0.077 0.923 11 C 0.475 3.525 12 O -0.573 6.573 13 N -0.437 5.437 14 C -0.296 4.296 15 H 0.103 0.897 16 C 0.027 3.973 17 N -0.896 5.896 18 Si 0.935 3.065 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.270 1.270 22 C 0.149 3.851 23 C 0.492 3.508 24 O -0.507 6.507 25 O -0.535 6.535 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.270 0.730 40 H 0.133 0.867 41 H 0.072 0.928 42 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.568 -5.860 -10.326 11.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.147 4.147 4 C -0.089 4.089 5 H 0.109 0.891 6 C -0.156 4.156 7 C -0.158 4.158 8 C -0.150 4.150 9 C -0.126 4.126 10 H 0.095 0.905 11 C 0.264 3.736 12 O -0.455 6.455 13 N -0.157 5.157 14 C -0.423 4.423 15 H 0.121 0.879 16 C -0.174 4.174 17 N -0.537 5.537 18 Si 0.762 3.238 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.194 1.194 22 C 0.022 3.978 23 C 0.332 3.668 24 O -0.393 6.393 25 O -0.346 6.346 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.150 0.850 41 H 0.089 0.911 42 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 0.714 -6.254 -9.553 11.440 hybrid contribution -0.748 0.917 0.661 1.355 sum -0.033 -5.337 -8.892 10.371 Atomic orbital electron populations 1.21775 0.96404 1.00881 1.01839 1.21502 0.95344 0.97360 1.01577 1.21550 0.94706 0.96178 1.02221 1.21977 0.94820 0.94356 0.97797 0.89146 1.22436 0.95905 0.99622 0.97676 1.22099 0.97397 0.96923 0.99396 1.22073 0.96271 0.97672 0.99022 1.22103 0.97249 0.97671 0.95607 0.90507 1.19982 0.81206 0.82512 0.89922 1.90506 1.54101 1.56716 1.44193 1.43367 1.62812 1.03063 1.06417 1.19719 1.37370 0.97742 0.87489 0.87887 1.25269 0.95379 0.97257 0.99466 1.69600 1.36055 1.12227 1.35851 0.85780 0.77818 0.78737 0.81489 1.20363 1.21024 1.19448 1.20674 0.88905 0.98700 0.89477 1.23839 0.93656 0.74115 0.75183 1.90601 1.53862 1.47694 1.47105 1.84528 1.31667 1.65412 1.53017 0.93279 0.92680 0.93057 0.92390 0.92122 0.91337 0.92686 0.91898 0.91906 0.91987 0.92113 0.91295 0.91656 0.91912 0.84980 0.91058 0.75378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 37.16 0.37 -1.54 16 2 C -0.12 -1.65 5.78 -26.73 -0.15 -1.81 16 3 C -0.11 -1.82 4.71 -26.73 -0.13 -1.94 16 4 C -0.07 -1.20 2.18 -88.64 -0.19 -1.39 16 5 H 0.09 1.73 7.25 -51.93 -0.38 1.36 16 6 C -0.12 -1.57 5.47 -25.07 -0.14 -1.70 16 7 C -0.12 -1.54 6.80 -25.61 -0.17 -1.71 16 8 C -0.11 -1.75 6.08 -25.61 -0.16 -1.90 16 9 C -0.10 -1.96 1.73 -90.12 -0.16 -2.12 16 10 H 0.08 1.43 6.25 -51.93 -0.32 1.11 16 11 C 0.48 11.55 6.46 -10.99 -0.07 11.48 16 12 O -0.57 -15.85 15.49 5.54 0.09 -15.76 16 13 N -0.44 -11.05 2.17 -116.10 -0.25 -11.30 16 14 C -0.30 -8.16 9.30 -14.94 -0.14 -8.30 16 15 H 0.10 2.96 7.42 -52.48 -0.39 2.57 16 16 C 0.03 0.72 5.14 -17.47 -0.09 0.63 16 17 N -0.90 -23.61 8.77 55.50 0.49 -23.13 16 18 Si 0.93 20.94 29.56 -169.99 -5.03 15.92 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 C 0.15 3.28 4.83 -5.19 -0.03 3.26 16 23 C 0.49 11.05 5.70 36.00 0.21 11.25 16 24 O -0.51 -13.32 16.78 -18.74 -0.31 -13.63 16 25 O -0.54 -9.79 13.42 -39.25 -0.53 -10.32 16 26 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.70 7.41 -51.93 -0.38 0.32 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 32 H 0.05 0.87 8.10 -51.93 -0.42 0.45 16 33 H 0.06 0.77 8.01 -51.93 -0.42 0.36 16 34 H 0.06 0.74 8.02 -51.93 -0.42 0.33 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 1.16 7.83 -51.93 -0.41 0.75 16 38 H 0.06 0.90 7.59 -51.93 -0.39 0.51 16 39 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 40 H 0.13 3.05 6.33 -51.93 -0.33 2.72 16 41 H 0.07 1.31 6.00 -51.93 -0.31 0.99 16 42 H 0.39 5.52 9.10 45.56 0.41 5.93 16 LS Contribution 336.25 15.07 5.07 5.07 Total: -1.00 -32.58 336.25 -7.18 -39.75 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -5.85 Total: 9.21 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -0.85 Total: 4.19 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.23 Total: -34.43 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -0.76 Total: -39.71 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.58 -7.18 -39.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605229534.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.984 kcal (2) G-P(sol) polarization free energy of solvation -32.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds