Wall clock time and date at job start Tue Mar 31 2020 05:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99979 * 2 1 4 4 H 1.48495 * 109.47131 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46988 * 300.00141 * 3 2 1 6 6 H 1.48502 * 109.47291 * 59.99998 * 3 2 1 7 7 C 1.37881 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00025 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99988 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47032 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47027 * 180.02562 * 10 9 7 12 12 C 1.34781 * 119.99679 * 179.97438 * 11 10 9 13 13 O 1.21275 * 120.00318 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99683 * 179.97438 * 12 11 10 15 15 C 1.50700 * 108.79074 * 298.55644 * 14 12 11 16 16 O 1.20832 * 119.99463 * 241.44431 * 15 14 12 17 17 O 1.34226 * 120.00333 * 61.44479 * 15 14 12 18 18 C 1.45542 * 108.89394 * 179.97438 * 14 12 11 19 19 C 1.54245 * 112.32700 * 301.22752 * 18 14 12 20 20 C 1.50546 * 108.48390 * 279.88442 * 19 18 14 21 21 C 1.54069 * 112.41623 * 94.26691 * 20 19 18 22 22 C 1.54056 * 112.81521 * 318.27597 * 21 20 19 23 23 C 1.50476 * 112.50048 * 318.28454 * 22 21 20 24 24 H 0.96997 * 120.00113 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47218 * 60.00019 * 9 7 2 26 26 H 1.09002 * 109.46982 * 299.99950 * 9 7 2 27 27 H 1.08997 * 109.47347 * 59.99799 * 10 9 7 28 28 H 1.09007 * 109.46602 * 299.99994 * 10 9 7 29 29 H 0.96996 * 120.00575 * 359.97438 * 11 10 9 30 30 H 0.96691 * 117.00137 * 179.97438 * 17 15 14 31 31 H 1.09002 * 108.89596 * 61.93414 * 18 14 12 32 32 H 1.09003 * 108.89788 * 180.52448 * 18 14 12 33 33 H 1.09000 * 109.62486 * 39.68278 * 19 18 14 34 34 H 1.08999 * 109.63051 * 160.25691 * 19 18 14 35 35 H 1.09000 * 108.92627 * 333.51136 * 20 19 18 36 36 H 1.09006 * 108.83640 * 214.96125 * 20 19 18 37 37 H 1.09000 * 108.81197 * 197.41864 * 21 20 19 38 38 H 1.08999 * 108.81384 * 79.13971 * 21 20 19 39 39 H 1.09003 * 108.87949 * 197.50496 * 22 21 20 40 40 H 1.09005 * 108.87812 * 79.06574 * 22 21 20 41 41 H 1.09002 * 109.62685 * 334.44737 * 23 22 21 42 42 H 1.08994 * 109.79059 * 213.95829 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1868 -6.0980 -0.0018 13 8 3.3995 -6.0980 -0.0023 14 6 1.4333 -7.4031 -0.0018 15 6 0.6005 -7.4829 1.2516 16 8 0.7959 -8.3672 2.0514 17 8 -0.3583 -6.5716 1.4796 18 6 2.3901 -8.4998 -0.0032 19 6 3.3317 -8.4543 -1.2240 20 6 2.6034 -9.0281 -2.4101 21 6 1.9181 -7.9415 -3.2606 22 6 1.2294 -6.8602 -2.4063 23 6 0.4962 -7.4389 -1.2265 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8720 -3.6044 0.8894 28 1 2.8720 -3.6043 -0.8906 29 1 0.5429 -4.9309 -0.0011 30 1 -0.8665 -6.6641 2.2969 31 1 2.9885 -8.4472 0.9064 32 1 1.8452 -9.4438 -0.0127 33 1 3.6144 -7.4220 -1.4301 34 1 4.2234 -9.0475 -1.0210 35 1 1.8467 -9.7279 -2.0557 36 1 3.3166 -9.5667 -3.0342 37 1 1.1713 -8.4137 -3.8988 38 1 2.6674 -7.4654 -3.8930 39 1 0.5199 -6.3166 -3.0303 40 1 1.9847 -6.1625 -2.0446 41 1 0.2131 -8.4694 -1.4409 42 1 -0.3970 -6.8489 -1.0215 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605581492.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:00 Heat of formation + Delta-G solvation = -149.719964 kcal Electronic energy + Delta-G solvation = -23791.597747 eV Core-core repulsion = 20349.719530 eV Total energy + Delta-G solvation = -3441.878217 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.77140 -39.49722 -37.42901 -36.31462 -35.00648 -33.26095 -32.77828 -32.06927 -29.54698 -26.27041 -25.03124 -24.81872 -22.57549 -22.25994 -20.89331 -19.54512 -19.15314 -18.21941 -17.45872 -16.89650 -16.41614 -15.59089 -15.44044 -15.04923 -14.66394 -14.47007 -14.28732 -14.02289 -13.50391 -13.39260 -13.11237 -12.94987 -12.55386 -12.33017 -12.09546 -11.72723 -11.48295 -11.39277 -11.21930 -11.07166 -10.88648 -10.72499 -10.63979 -10.47093 -10.38720 -10.34145 -10.27179 -9.77543 -9.45115 -9.17223 -8.56922 -8.38237 -6.11364 -4.14165 1.90975 2.51109 3.12198 3.26847 3.34527 3.38782 3.50857 4.35547 4.37946 4.45711 4.71559 4.85249 4.98129 5.03871 5.12066 5.20106 5.25709 5.25954 5.39940 5.64527 5.68812 5.76692 5.85364 6.03191 6.05773 6.12695 6.16045 6.21153 6.25006 6.29783 6.32283 6.34678 6.55736 6.70047 6.85842 7.49370 7.59377 7.70322 7.86069 7.91851 8.24175 8.50578 8.91954 9.50865 11.00171 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021685 B = 0.004373 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.910276 B = 6401.646993 C = 6904.636276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.120 3.880 11 N -0.710 5.710 12 C 0.519 3.481 13 O -0.531 6.531 14 C -0.059 4.059 15 C 0.489 3.511 16 O -0.506 6.506 17 O -0.507 6.507 18 C -0.096 4.096 19 C -0.122 4.122 20 C -0.122 4.122 21 C -0.116 4.116 22 C -0.131 4.131 23 C -0.102 4.102 24 H 0.261 0.739 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.404 0.596 30 H 0.415 0.585 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.433 -17.425 -3.370 17.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.024 4.024 10 C -0.002 4.002 11 N -0.361 5.361 12 C 0.303 3.697 13 O -0.409 6.409 14 C -0.063 4.063 15 C 0.330 3.670 16 O -0.394 6.394 17 O -0.319 6.319 18 C -0.134 4.134 19 C -0.159 4.159 20 C -0.159 4.159 21 C -0.153 4.153 22 C -0.168 4.168 23 C -0.140 4.140 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.239 0.761 30 H 0.275 0.725 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.434 -17.468 -3.502 17.820 hybrid contribution -0.509 0.884 0.678 1.224 sum -0.943 -16.584 -2.824 16.849 Atomic orbital electron populations 1.69963 1.06072 1.26761 1.50419 1.24985 0.94874 0.99376 0.94979 0.86475 0.80181 0.83395 0.77624 1.19595 1.20933 1.20946 1.21082 0.93254 0.90364 1.51285 0.92230 1.19319 0.94156 0.90984 0.97957 1.21782 0.96120 0.81397 1.00862 1.46429 1.11093 1.06117 1.72420 1.19717 0.87958 0.84662 0.77341 1.90673 1.13242 1.86894 1.50082 1.19899 0.95868 0.97991 0.92579 1.23120 0.78228 0.78400 0.87281 1.90714 1.67124 1.34921 1.46602 1.84491 1.46871 1.53074 1.47508 1.20259 0.96487 0.95660 1.01008 1.21520 0.97222 1.04286 0.92860 1.21450 0.99326 0.97867 0.97274 1.21910 0.99383 0.96207 0.97814 1.21483 1.00185 0.98595 0.96543 1.21465 0.97123 1.03525 0.91875 0.92900 0.95852 0.95874 0.92506 0.92356 0.76083 0.72549 0.90566 0.90875 0.88661 0.91602 0.92349 0.92304 0.92301 0.92005 0.90915 0.90795 0.89851 0.89656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.29 55.43 0.74 -24.94 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.17 9.11 -34.44 -0.31 -14.49 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.12 2.47 5.61 -4.04 -0.02 2.45 16 11 N -0.71 -12.00 4.90 -60.29 -0.30 -12.30 16 12 C 0.52 8.48 3.67 -10.98 -0.04 8.44 16 13 O -0.53 -10.18 13.66 5.56 0.08 -10.11 16 14 C -0.06 -0.77 0.49 -159.68 -0.08 -0.85 16 15 C 0.49 6.43 6.83 36.01 0.25 6.68 16 16 O -0.51 -7.75 16.54 -18.75 -0.31 -8.06 16 17 O -0.51 -5.43 11.41 -39.25 -0.45 -5.87 16 18 C -0.10 -1.24 2.97 -29.60 -0.09 -1.33 16 19 C -0.12 -1.48 5.20 -27.31 -0.14 -1.62 16 20 C -0.12 -1.19 5.32 -27.40 -0.15 -1.34 16 21 C -0.12 -1.14 5.85 -25.62 -0.15 -1.29 16 22 C -0.13 -1.47 5.11 -27.44 -0.14 -1.61 16 23 C -0.10 -1.08 4.42 -27.34 -0.12 -1.20 16 24 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.40 6.22 6.92 -40.82 -0.28 5.94 16 30 H 0.41 2.69 9.10 45.56 0.41 3.11 16 31 H 0.08 1.12 7.79 -51.93 -0.40 0.72 16 32 H 0.07 0.84 7.39 -51.93 -0.38 0.45 16 33 H 0.10 1.40 4.53 -51.93 -0.24 1.17 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.52 6.63 -51.93 -0.34 0.18 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 1.04 4.75 -51.93 -0.25 0.79 16 41 H 0.08 0.75 6.98 -51.93 -0.36 0.39 16 42 H 0.08 0.84 7.44 -51.93 -0.39 0.45 16 LS Contribution 326.63 15.07 4.92 4.92 Total: -1.00 -31.78 326.63 -7.15 -38.93 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -5.58 Total: 5.77 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -1.24 Total: -4.43 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.44 Total: -37.23 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.68 Total: -24.04 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.78 -7.15 -38.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605581492.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.793 kcal (2) G-P(sol) polarization free energy of solvation -31.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds