Wall clock time and date at job start Tue Mar 31 2020 06:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46632 * 2 1 4 4 H 1.09000 * 109.47044 * 304.99675 * 3 2 1 5 5 C 1.52996 * 109.47374 * 65.00218 * 3 2 1 6 6 C 1.52997 * 109.47183 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47050 * 299.99512 * 6 5 3 8 8 H 1.08999 * 109.47278 * 300.00816 * 7 6 5 9 9 C 1.50694 * 109.47389 * 179.97438 * 7 6 5 10 10 O 1.21284 * 120.00151 * 252.76689 * 9 7 6 11 11 N 1.34783 * 119.99548 * 72.76984 * 9 7 6 12 12 C 1.37096 * 120.00116 * 2.61602 * 11 9 7 13 13 H 1.08000 * 120.00030 * 342.93908 * 12 11 9 14 14 C 1.38949 * 119.99738 * 162.94492 * 12 11 9 15 15 N 1.31405 * 120.00331 * 350.60473 * 14 12 11 16 16 Si 1.86805 * 119.99923 * 170.60422 * 14 12 11 17 17 H 1.48502 * 109.46837 * 59.99619 * 16 14 12 18 18 H 1.48493 * 109.47103 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47026 * 300.00122 * 16 14 12 20 20 C 1.46500 * 119.99595 * 182.61645 * 11 9 7 21 21 C 1.50700 * 109.47319 * 277.14803 * 20 11 9 22 22 O 1.20831 * 119.99550 * 359.97438 * 21 20 11 23 23 O 1.34226 * 120.00076 * 180.02562 * 21 20 11 24 24 C 1.53003 * 109.46998 * 60.00133 * 7 6 5 25 25 C 1.53000 * 109.46916 * 185.00177 * 3 2 1 26 26 H 1.08993 * 109.47177 * 299.99878 * 1 2 3 27 27 H 1.08995 * 109.47385 * 60.00533 * 1 2 3 28 28 H 1.09005 * 109.46749 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46788 * 240.00050 * 2 1 3 30 30 H 1.08995 * 109.47385 * 119.99467 * 2 1 3 31 31 H 1.09001 * 109.46717 * 300.00283 * 5 3 2 32 32 H 1.08996 * 109.47170 * 59.99349 * 5 3 2 33 33 H 1.08996 * 109.47772 * 59.99506 * 6 5 3 34 34 H 1.09008 * 109.46785 * 180.02562 * 6 5 3 35 35 H 0.96999 * 120.00362 * 180.02562 * 15 14 12 36 36 H 1.08999 * 109.47152 * 37.15192 * 20 11 9 37 37 H 1.09004 * 109.47062 * 157.14860 * 20 11 9 38 38 H 0.96698 * 116.99862 * 180.02562 * 23 21 20 39 39 H 1.08996 * 109.47350 * 180.02562 * 24 7 6 40 40 H 1.09003 * 109.46858 * 59.99862 * 24 7 6 41 41 H 1.09005 * 109.47066 * 59.99783 * 25 3 2 42 42 H 1.09003 * 109.47304 * 299.99858 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 2.1445 3.5693 1.3070 7 6 3.6694 3.5718 1.1810 8 1 4.1044 3.0330 2.0228 9 6 4.1711 4.9928 1.1801 10 8 4.5827 5.4899 0.1532 11 7 4.1624 5.7112 2.3204 12 6 3.7476 5.1325 3.4920 13 1 3.1772 4.2157 3.4692 14 6 4.0611 5.7256 4.7088 15 7 4.9052 6.7318 4.7513 16 14 3.2824 5.0927 6.2845 17 1 3.6447 3.6655 6.4770 18 1 3.7781 5.8886 7.4360 19 1 1.8057 5.2205 6.1929 20 6 4.5963 7.1104 2.3079 21 6 6.0994 7.1711 2.3969 22 8 6.7423 6.1503 2.4644 23 8 6.7240 8.3592 2.4023 24 6 4.0742 2.8877 -0.1263 25 6 3.5647 1.4445 -0.1258 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 0.5489 2.1252 1.3969 32 1 2.0698 1.5876 2.1491 33 1 1.7096 4.1081 0.4652 34 1 1.8565 4.0565 2.2387 35 1 5.1243 7.1456 5.6008 36 1 4.2676 7.5844 1.3830 37 1 4.1605 7.6336 3.1591 38 1 7.6891 8.3476 2.4604 39 1 5.1605 2.8891 -0.2159 40 1 3.6391 3.4265 -0.9681 41 1 3.8531 0.9571 -1.0572 42 1 3.9995 0.9055 0.7161 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605763839.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:24 Heat of formation + Delta-G solvation = -149.602289 kcal Electronic energy + Delta-G solvation = -23808.016252 eV Core-core repulsion = 20366.143138 eV Total energy + Delta-G solvation = -3441.873114 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.65389 -38.74761 -37.45010 -35.15709 -34.54190 -33.52851 -31.54881 -30.43498 -29.19586 -27.52472 -24.91938 -23.76370 -22.19464 -21.33207 -20.28599 -19.48806 -18.99842 -17.14274 -16.84865 -16.15659 -15.45859 -15.02431 -14.65022 -14.38237 -14.30073 -14.23798 -13.75594 -13.42808 -13.34302 -12.95337 -12.66169 -12.32865 -11.84497 -11.76791 -11.65367 -11.44221 -11.35767 -11.26812 -10.97345 -10.82199 -10.75694 -10.53648 -10.48504 -10.37585 -10.24313 -10.04700 -9.84747 -9.60573 -9.49707 -9.02405 -8.41515 -7.96210 -6.44617 -4.01853 3.08731 3.16465 3.17945 3.65037 3.76427 4.03171 4.30543 4.70558 4.89524 4.95017 5.03088 5.09799 5.31366 5.48771 5.53150 5.67587 5.76393 5.79963 5.90586 5.93064 5.99243 6.02870 6.03973 6.12634 6.21353 6.32324 6.41377 6.44466 6.55509 6.60505 6.61747 6.66903 6.71420 6.86654 6.91364 6.98321 7.35431 7.61022 7.66559 8.26822 8.98970 9.20790 9.40564 9.80637 10.59074 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.017490 B = 0.005897 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.512995 B = 4747.263355 C = 5957.750172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.088 4.088 4 H 0.067 0.933 5 C -0.111 4.111 6 C -0.111 4.111 7 C -0.085 4.085 8 H 0.088 0.912 9 C 0.476 3.524 10 O -0.602 6.602 11 N -0.433 5.433 12 C -0.323 4.323 13 H 0.109 0.891 14 C 0.031 3.969 15 N -0.886 5.886 16 Si 0.930 3.070 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.272 1.272 20 C 0.151 3.849 21 C 0.500 3.500 22 O -0.519 6.519 23 O -0.534 6.534 24 C -0.096 4.096 25 C -0.112 4.112 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.272 0.728 36 H 0.073 0.927 37 H 0.142 0.858 38 H 0.388 0.612 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.209 -6.469 -3.856 9.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.107 4.107 4 H 0.086 0.914 5 C -0.149 4.149 6 C -0.149 4.149 7 C -0.106 4.106 8 H 0.106 0.894 9 C 0.265 3.735 10 O -0.487 6.487 11 N -0.152 5.152 12 C -0.450 4.450 13 H 0.126 0.874 14 C -0.171 4.171 15 N -0.527 5.527 16 Si 0.756 3.244 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.197 1.197 20 C 0.026 3.974 21 C 0.342 3.658 22 O -0.405 6.405 23 O -0.344 6.344 24 C -0.134 4.134 25 C -0.150 4.150 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.159 0.841 38 H 0.244 0.756 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.194 -6.379 -4.187 9.828 hybrid contribution 0.582 -0.257 1.166 1.328 sum -5.612 -6.636 -3.021 9.201 Atomic orbital electron populations 1.21822 0.96247 1.01023 1.01967 1.21575 0.95602 0.96901 1.01592 1.21215 0.95785 0.95179 0.98484 0.91409 1.21622 1.00117 0.96020 0.97120 1.21548 0.94082 0.96333 1.02960 1.20977 0.96373 0.94205 0.99084 0.89352 1.20277 0.81727 0.87769 0.83706 1.90516 1.52405 1.72411 1.33381 1.43417 1.55747 1.08398 1.07653 1.19800 1.32587 1.10034 0.82572 0.87384 1.25266 0.95664 0.96600 0.99585 1.69745 1.31807 1.23867 1.27232 0.85939 0.79152 0.78871 0.80416 1.19831 1.20860 1.19733 1.20707 0.87015 0.86135 1.03571 1.23898 0.92309 0.79841 0.69784 1.90552 1.67649 1.36082 1.46265 1.84543 1.26097 1.36926 1.86881 1.21310 1.00740 0.94079 0.97289 1.21614 0.94949 0.97230 1.01195 0.92361 0.92950 0.93322 0.92430 0.92147 0.92095 0.91992 0.92373 0.90092 0.91681 0.90916 0.84052 0.75566 0.92118 0.91649 0.92475 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.67 37.16 0.36 -1.12 16 2 C -0.12 -1.27 5.40 -26.73 -0.14 -1.41 16 3 C -0.09 -1.12 2.19 -90.62 -0.20 -1.32 16 4 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 5 C -0.11 -1.52 4.96 -26.73 -0.13 -1.65 16 6 C -0.11 -1.88 4.88 -26.73 -0.13 -2.01 16 7 C -0.09 -1.68 1.67 -91.77 -0.15 -1.84 16 8 H 0.09 1.81 7.36 -51.93 -0.38 1.43 16 9 C 0.48 11.58 6.61 -10.99 -0.07 11.51 16 10 O -0.60 -16.06 15.70 5.55 0.09 -15.98 16 11 N -0.43 -10.84 2.20 -116.10 -0.26 -11.10 16 12 C -0.32 -7.90 8.49 -14.93 -0.13 -8.03 16 13 H 0.11 2.45 4.95 -52.49 -0.26 2.19 16 14 C 0.03 0.77 5.18 -17.47 -0.09 0.68 16 15 N -0.89 -22.66 8.95 55.50 0.50 -22.17 16 16 Si 0.93 19.13 29.56 -169.99 -5.03 14.10 16 17 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 18 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 20 C 0.15 3.69 5.10 -5.19 -0.03 3.66 16 21 C 0.50 12.49 6.65 36.01 0.24 12.73 16 22 O -0.52 -14.67 17.01 -18.75 -0.32 -14.99 16 23 O -0.53 -11.03 13.42 -39.25 -0.53 -11.56 16 24 C -0.10 -1.71 4.58 -26.70 -0.12 -1.83 16 25 C -0.11 -1.57 5.21 -26.70 -0.14 -1.70 16 26 H 0.06 0.57 6.56 -51.93 -0.34 0.23 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.75 6.56 -51.93 -0.34 0.41 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.44 6.07 -51.92 -0.32 1.13 16 35 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 36 H 0.07 1.68 7.69 -51.93 -0.40 1.28 16 37 H 0.14 3.46 5.89 -51.93 -0.31 3.15 16 38 H 0.39 6.24 9.10 45.56 0.41 6.66 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 330.63 15.07 4.98 4.98 Total: -1.00 -30.81 330.63 -7.00 -37.81 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -5.70 Total: 11.22 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: -0.74 Total: 7.67 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.24 Total: -33.26 kcal Atomic # 8 Polarization: -41.76 SS G_CDS: -0.76 Total: -42.52 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.81 -7.00 -37.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605763839.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.791 kcal (2) G-P(sol) polarization free energy of solvation -30.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds