Wall clock time and date at job start Tue Mar 31 2020 06:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46632 * 2 1 4 4 H 1.09000 * 109.47044 * 304.99675 * 3 2 1 5 5 C 1.52996 * 109.47374 * 65.00218 * 3 2 1 6 6 C 1.52997 * 109.47183 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47050 * 299.99512 * 6 5 3 8 8 H 1.08999 * 109.47278 * 300.00816 * 7 6 5 9 9 C 1.50694 * 109.47389 * 179.97438 * 7 6 5 10 10 O 1.21284 * 120.00151 * 252.76689 * 9 7 6 11 11 N 1.34783 * 119.99548 * 72.76984 * 9 7 6 12 12 C 1.37096 * 120.00116 * 2.61602 * 11 9 7 13 13 H 1.08000 * 120.00030 * 342.93908 * 12 11 9 14 14 C 1.38949 * 119.99738 * 162.94492 * 12 11 9 15 15 N 1.31405 * 120.00331 * 350.60473 * 14 12 11 16 16 Si 1.86805 * 119.99923 * 170.60422 * 14 12 11 17 17 H 1.48502 * 109.46837 * 59.99619 * 16 14 12 18 18 H 1.48493 * 109.47103 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47026 * 300.00122 * 16 14 12 20 20 C 1.46500 * 119.99595 * 182.61645 * 11 9 7 21 21 C 1.50700 * 109.47319 * 277.14803 * 20 11 9 22 22 O 1.20831 * 119.99550 * 359.97438 * 21 20 11 23 23 O 1.34226 * 120.00076 * 180.02562 * 21 20 11 24 24 C 1.53003 * 109.46998 * 60.00133 * 7 6 5 25 25 C 1.53000 * 109.46916 * 185.00177 * 3 2 1 26 26 H 1.08993 * 109.47177 * 299.99878 * 1 2 3 27 27 H 1.08995 * 109.47385 * 60.00533 * 1 2 3 28 28 H 1.09005 * 109.46749 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46788 * 240.00050 * 2 1 3 30 30 H 1.08995 * 109.47385 * 119.99467 * 2 1 3 31 31 H 1.09001 * 109.46717 * 300.00283 * 5 3 2 32 32 H 1.08996 * 109.47170 * 59.99349 * 5 3 2 33 33 H 1.08996 * 109.47772 * 59.99506 * 6 5 3 34 34 H 1.09008 * 109.46785 * 180.02562 * 6 5 3 35 35 H 0.96999 * 120.00362 * 180.02562 * 15 14 12 36 36 H 1.08999 * 109.47152 * 37.15192 * 20 11 9 37 37 H 1.09004 * 109.47062 * 157.14860 * 20 11 9 38 38 H 0.96698 * 116.99862 * 180.02562 * 23 21 20 39 39 H 1.08996 * 109.47350 * 180.02562 * 24 7 6 40 40 H 1.09003 * 109.46858 * 59.99862 * 24 7 6 41 41 H 1.09005 * 109.47066 * 59.99783 * 25 3 2 42 42 H 1.09003 * 109.47304 * 299.99858 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 2.1445 3.5693 1.3070 7 6 3.6694 3.5718 1.1810 8 1 4.1044 3.0330 2.0228 9 6 4.1711 4.9928 1.1801 10 8 4.5827 5.4899 0.1532 11 7 4.1624 5.7112 2.3204 12 6 3.7476 5.1325 3.4920 13 1 3.1772 4.2157 3.4692 14 6 4.0611 5.7256 4.7088 15 7 4.9052 6.7318 4.7513 16 14 3.2824 5.0927 6.2845 17 1 3.6447 3.6655 6.4770 18 1 3.7781 5.8886 7.4360 19 1 1.8057 5.2205 6.1929 20 6 4.5963 7.1104 2.3079 21 6 6.0994 7.1711 2.3969 22 8 6.7423 6.1503 2.4644 23 8 6.7240 8.3592 2.4023 24 6 4.0742 2.8877 -0.1263 25 6 3.5647 1.4445 -0.1258 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 0.5489 2.1252 1.3969 32 1 2.0698 1.5876 2.1491 33 1 1.7096 4.1081 0.4652 34 1 1.8565 4.0565 2.2387 35 1 5.1243 7.1456 5.6008 36 1 4.2676 7.5844 1.3830 37 1 4.1605 7.6336 3.1591 38 1 7.6891 8.3476 2.4604 39 1 5.1605 2.8891 -0.2159 40 1 3.6391 3.4265 -0.9681 41 1 3.8531 0.9571 -1.0572 42 1 3.9995 0.9055 0.7161 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605763839.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:24 Heat of formation + Delta-G solvation = -167.696499 kcal Electronic energy + Delta-G solvation = -23808.800876 eV Core-core repulsion = 20366.143138 eV Total energy + Delta-G solvation = -3442.657738 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.44355 -40.47452 -38.94721 -37.03690 -36.49642 -34.71801 -33.44367 -31.73404 -30.53842 -29.17990 -26.75133 -25.01243 -23.46790 -22.92696 -21.70643 -20.90651 -20.58423 -19.00633 -18.69669 -18.00214 -17.36492 -16.41315 -16.24863 -16.13647 -16.04389 -15.49355 -15.22829 -14.77643 -14.67873 -14.30319 -14.07860 -13.64069 -13.48268 -13.45746 -13.17617 -13.00720 -12.67005 -12.55842 -12.41135 -12.32841 -12.20085 -12.12308 -11.96129 -11.85541 -11.60301 -11.53276 -11.27946 -11.11825 -10.93416 -10.73121 -10.26014 -9.89968 -8.31936 -5.95182 1.44520 1.48977 1.58871 1.71236 1.88923 2.28362 2.52230 2.93564 3.20717 3.80498 3.85660 3.92150 4.21150 4.26941 4.37749 4.46280 4.53605 4.58221 4.62576 4.67395 4.74187 4.83423 4.84366 4.90712 4.95395 5.08677 5.13848 5.20089 5.23544 5.29881 5.33329 5.34899 5.44327 5.46271 5.55267 5.63950 5.70184 5.74898 5.86569 6.36919 7.08609 7.33532 7.50672 7.90470 8.71671 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.017490 B = 0.005897 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.512995 B = 4747.263355 C = 5957.750172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.085 4.085 4 H 0.066 0.934 5 C -0.105 4.105 6 C -0.104 4.104 7 C -0.080 4.080 8 H 0.079 0.921 9 C 0.459 3.541 10 O -0.635 6.635 11 N -0.442 5.442 12 C -0.339 4.339 13 H 0.123 0.877 14 C -0.012 4.012 15 N -0.911 5.911 16 Si 0.997 3.003 17 H -0.270 1.270 18 H -0.288 1.288 19 H -0.257 1.257 20 C 0.146 3.854 21 C 0.503 3.497 22 O -0.559 6.559 23 O -0.520 6.520 24 C -0.091 4.091 25 C -0.105 4.105 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.271 0.729 36 H 0.078 0.922 37 H 0.141 0.859 38 H 0.411 0.589 39 H 0.037 0.963 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.767 -8.120 -3.319 11.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.103 4.103 4 H 0.085 0.915 5 C -0.142 4.142 6 C -0.142 4.142 7 C -0.101 4.101 8 H 0.098 0.902 9 C 0.250 3.750 10 O -0.523 6.523 11 N -0.160 5.160 12 C -0.465 4.465 13 H 0.140 0.860 14 C -0.212 4.212 15 N -0.552 5.552 16 Si 0.820 3.180 17 H -0.195 1.195 18 H -0.213 1.213 19 H -0.181 1.181 20 C 0.020 3.980 21 C 0.346 3.654 22 O -0.449 6.449 23 O -0.332 6.332 24 C -0.130 4.130 25 C -0.142 4.142 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.158 0.842 38 H 0.270 0.730 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.752 -8.009 -3.654 11.730 hybrid contribution 1.159 0.386 0.967 1.558 sum -6.593 -7.623 -2.687 10.431 Atomic orbital electron populations 1.21818 0.95355 1.01866 1.01981 1.21522 0.96322 0.95070 1.02237 1.21188 0.94577 0.96747 0.97800 0.91522 1.21604 1.01262 0.93492 0.97887 1.21489 0.91730 0.98795 1.02144 1.21002 0.98291 0.91087 0.99720 0.90236 1.21167 0.81318 0.89436 0.83089 1.90473 1.53886 1.73544 1.34390 1.43668 1.55549 1.08632 1.08183 1.20228 1.32951 1.10735 0.82609 0.85964 1.26166 0.95836 0.96696 1.02481 1.69858 1.32738 1.24865 1.27734 0.84914 0.78934 0.78045 0.76075 1.19543 1.21326 1.18122 1.20764 0.87055 0.86504 1.03632 1.23960 0.92580 0.80079 0.68739 1.90527 1.68489 1.37566 1.48317 1.84468 1.28096 1.34651 1.86002 1.21270 0.99353 0.96556 0.95777 1.21579 0.96031 0.94261 1.02354 0.92464 0.92838 0.92127 0.91516 0.91831 0.90060 0.91679 0.92797 0.91162 0.91871 0.90395 0.84223 0.72977 0.94384 0.92691 0.90688 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.67 71.98 0.70 -1.74 16 2 C -0.11 -2.05 5.40 30.60 0.17 -1.88 16 3 C -0.08 -1.94 2.19 -10.79 -0.02 -1.96 16 4 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 5 C -0.11 -2.63 4.96 30.59 0.15 -2.47 16 6 C -0.10 -3.42 4.88 30.59 0.15 -3.27 16 7 C -0.08 -3.18 1.67 -11.54 -0.02 -3.20 16 8 H 0.08 3.29 7.36 -2.39 -0.02 3.27 16 9 C 0.46 22.94 6.61 87.65 0.58 23.52 16 10 O -0.63 -35.06 15.70 -3.04 -0.05 -35.11 16 11 N -0.44 -22.57 2.20 -639.61 -1.41 -23.98 16 12 C -0.34 -16.63 8.49 84.04 0.71 -15.92 16 13 H 0.12 5.49 4.95 -2.91 -0.01 5.47 16 14 C -0.01 -0.60 5.18 84.93 0.44 -0.16 16 15 N -0.91 -46.81 8.95 21.66 0.19 -46.61 16 16 Si 1.00 38.46 29.56 68.60 2.03 40.49 16 17 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 18 H -0.29 -11.23 7.11 99.48 0.71 -10.52 16 19 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 20 C 0.15 7.28 5.10 85.63 0.44 7.72 16 21 C 0.50 25.50 6.65 71.24 0.47 25.98 16 22 O -0.56 -32.27 17.01 21.95 0.37 -31.90 16 23 O -0.52 -21.31 13.42 -51.38 -0.69 -22.00 16 24 C -0.09 -3.27 4.58 30.61 0.14 -3.13 16 25 C -0.10 -2.74 5.21 30.61 0.16 -2.58 16 26 H 0.06 0.92 6.56 -2.39 -0.02 0.91 16 27 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 31 H 0.08 1.74 6.56 -2.39 -0.02 1.72 16 32 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.07 2.46 6.07 -2.38 -0.01 2.44 16 35 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 36 H 0.08 3.71 7.69 -2.39 -0.02 3.69 16 37 H 0.14 6.97 5.89 -2.39 -0.01 6.95 16 38 H 0.41 12.85 9.10 -74.06 -0.67 12.18 16 39 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.05 2.05 7.96 -2.39 -0.02 2.03 16 41 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -66.87 330.63 4.87 -62.01 By element: Atomic # 1 Polarization: 35.86 SS G_CDS: 0.35 Total: 36.21 kcal Atomic # 6 Polarization: 16.83 SS G_CDS: 4.06 Total: 20.89 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: -1.21 Total: -70.59 kcal Atomic # 8 Polarization: -88.65 SS G_CDS: -0.36 Total: -89.01 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal Total: -66.87 4.87 -62.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605763839.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.690 kcal (2) G-P(sol) polarization free energy of solvation -66.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds