Wall clock time and date at job start Tue Mar 31 2020 05:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99749 * 2 1 4 4 H 1.48497 * 109.47376 * 239.99944 * 3 2 1 5 5 H 1.48497 * 109.47170 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47072 * 120.00223 * 3 2 1 7 7 C 1.37880 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99645 * 167.04928 * 7 2 1 9 9 C 1.50694 * 120.00008 * 347.04656 * 7 2 1 10 10 C 1.52996 * 115.55087 * 301.49117 * 9 7 2 11 11 N 1.46905 * 109.46944 * 280.12372 * 10 9 7 12 12 C 1.46896 * 111.00244 * 179.29458 * 11 10 9 13 13 H 1.08998 * 109.47492 * 325.31813 * 12 11 10 14 14 C 1.50701 * 109.46961 * 85.31479 * 12 11 10 15 15 O 1.20824 * 120.00077 * 359.97438 * 14 12 11 16 16 O 1.34228 * 120.00062 * 180.02562 * 14 12 11 17 17 C 1.52996 * 109.47404 * 205.31622 * 12 11 10 18 18 C 1.53172 * 109.54245 * 292.71756 * 17 12 11 19 19 C 1.53110 * 109.15716 * 183.24148 * 18 17 12 20 20 O 1.42901 * 109.48537 * 57.47951 * 19 18 17 21 21 C 1.42904 * 114.09361 * 298.88577 * 20 19 18 22 22 C 1.53087 * 109.41744 * 61.16231 * 21 20 19 23 23 C 1.52999 * 117.51671 * 87.18768 * 9 7 2 24 24 C 1.53001 * 60.00056 * 107.48328 * 23 9 7 25 25 H 0.96996 * 120.00437 * 5.04963 * 1 2 3 26 26 H 1.09002 * 109.47458 * 40.12769 * 10 9 7 27 27 H 1.08997 * 109.47249 * 160.13194 * 10 9 7 28 28 H 1.00894 * 111.00196 * 303.25128 * 11 10 9 29 29 H 0.96703 * 117.00340 * 180.02562 * 16 14 12 30 30 H 1.08996 * 109.54683 * 52.89916 * 17 12 11 31 31 H 1.09002 * 109.52721 * 303.05926 * 18 17 12 32 32 H 1.08998 * 109.52482 * 63.24840 * 18 17 12 33 33 H 1.09004 * 109.40421 * 297.49243 * 19 18 17 34 34 H 1.09007 * 109.48208 * 177.50328 * 19 18 17 35 35 H 1.09000 * 109.48073 * 301.17732 * 21 20 19 36 36 H 1.09004 * 109.48094 * 181.14663 * 21 20 19 37 37 H 1.09000 * 109.52446 * 182.48349 * 22 21 20 38 38 H 1.09002 * 109.52007 * 62.29147 * 22 21 20 39 39 H 1.09003 * 117.50302 * 214.97502 * 23 9 7 40 40 H 1.09000 * 117.50199 * 359.97438 * 23 9 7 41 41 H 1.08998 * 117.49687 * 252.51257 * 24 23 9 42 42 H 1.09000 * 117.51848 * 107.48286 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0640 -1.2057 -0.2102 9 6 1.2799 -2.4827 0.2914 10 6 0.5745 -2.5505 1.6474 11 7 1.5573 -2.8557 2.6958 12 6 0.9174 -2.9123 4.0169 13 1 0.1120 -2.1792 4.0623 14 6 0.3543 -4.2917 4.2435 15 8 0.4734 -5.1403 3.3918 16 8 -0.2804 -4.5772 5.3913 17 6 1.9529 -2.6000 5.0990 18 6 2.9884 -3.7271 5.1578 19 6 3.9728 -3.4461 6.2963 20 8 3.2562 -3.3232 7.5266 21 6 2.3082 -2.2540 7.5451 22 6 1.2557 -2.4881 6.4584 23 6 0.6199 -3.2047 -0.8850 24 6 1.8908 -3.7756 -0.2526 25 1 -0.4850 0.8367 -0.0739 26 1 0.1026 -1.5912 1.8599 27 1 -0.1852 -3.3317 1.6231 28 1 2.0464 -3.7147 2.4939 29 1 -0.6242 -5.4756 5.4911 30 1 2.4510 -1.6589 4.8663 31 1 2.4841 -4.6761 5.3399 32 1 3.5278 -3.7759 4.2119 33 1 4.5071 -2.5181 6.0924 34 1 4.6857 -4.2673 6.3715 35 1 2.8207 -1.3105 7.3576 36 1 1.8219 -2.2162 8.5200 37 1 0.5570 -1.6517 6.4417 38 1 0.7153 -3.4114 6.6676 39 1 -0.3168 -3.7281 -0.6930 40 1 0.7095 -2.7475 -1.8704 41 1 2.8166 -3.6941 -0.8220 42 1 1.7905 -4.6745 0.3558 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608178576.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:40 Heat of formation + Delta-G solvation = -119.736651 kcal Electronic energy + Delta-G solvation = -23761.485906 eV Core-core repulsion = 20320.907864 eV Total energy + Delta-G solvation = -3440.578043 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.69532 -38.98379 -37.17604 -36.02095 -35.34161 -32.56212 -31.97317 -31.08021 -27.94527 -25.61920 -24.12741 -23.91780 -23.34656 -21.37174 -20.86485 -19.62155 -19.00771 -17.95436 -17.04872 -16.46755 -15.98531 -15.73466 -15.52736 -14.71375 -14.67316 -14.47092 -14.15616 -13.85062 -13.35274 -13.26930 -13.15782 -12.63549 -12.28096 -11.97805 -11.58495 -11.49735 -11.31402 -11.28429 -10.96401 -10.88019 -10.77574 -10.50673 -10.45702 -10.33555 -10.19582 -10.18029 -9.59437 -9.26694 -9.02167 -8.51072 -8.07668 -7.85126 -6.00362 -3.99796 2.34363 3.18689 3.33234 3.37876 3.42172 3.86895 4.40569 4.44820 4.73591 4.80529 4.96967 5.06734 5.18416 5.23041 5.34294 5.40322 5.50742 5.57270 5.59546 5.67597 5.74493 5.85840 5.99015 6.08258 6.13736 6.20489 6.38121 6.49756 6.52640 6.60477 6.64125 6.76654 6.84531 7.10000 7.17625 7.42529 7.55438 7.70818 7.94585 7.96829 8.04326 8.51178 8.95707 9.60354 11.07724 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.016407 B = 0.005653 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.196210 B = 4952.260095 C = 5804.888590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.071 3.929 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.477 4.477 8 H 0.058 0.942 9 C 0.060 3.940 10 C 0.100 3.900 11 N -0.639 5.639 12 C 0.101 3.899 13 H 0.113 0.887 14 C 0.451 3.549 15 O -0.517 6.517 16 O -0.515 6.515 17 C -0.071 4.071 18 C -0.154 4.154 19 C 0.064 3.936 20 O -0.387 6.387 21 C 0.063 3.937 22 C -0.164 4.164 23 C -0.180 4.180 24 C -0.210 4.210 25 H 0.260 0.740 26 H 0.092 0.908 27 H 0.003 0.997 28 H 0.343 0.657 29 H 0.396 0.604 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.792 -5.579 13.958 15.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.131 4.131 3 Si 0.717 3.283 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.515 4.515 8 H 0.077 0.923 9 C 0.059 3.941 10 C -0.028 4.028 11 N -0.270 5.270 12 C -0.012 4.012 13 H 0.131 0.869 14 C 0.291 3.709 15 O -0.404 6.404 16 O -0.326 6.326 17 C -0.090 4.090 18 C -0.191 4.191 19 C -0.013 4.013 20 O -0.306 6.306 21 C -0.013 4.013 22 C -0.202 4.202 23 C -0.219 4.219 24 C -0.248 4.248 25 H 0.070 0.930 26 H 0.110 0.890 27 H 0.021 0.979 28 H 0.164 0.836 29 H 0.254 0.746 30 H 0.117 0.883 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.068 0.932 36 H 0.109 0.891 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.047 -4.739 13.943 14.868 hybrid contribution -0.505 -0.477 -0.510 0.862 sum 1.541 -5.217 13.433 14.492 Atomic orbital electron populations 1.69966 1.05957 1.26757 1.49401 1.24917 0.94684 0.98772 0.94729 0.86721 0.79736 0.83192 0.78695 1.20485 1.21512 1.20042 1.20346 0.94445 0.89150 1.47524 0.92336 1.18761 0.96374 0.90162 0.88781 1.21666 0.90991 0.99532 0.90573 1.60875 1.27443 1.39570 0.99135 1.21729 0.96979 0.89151 0.93344 0.86907 1.25468 0.74100 0.92973 0.78321 1.90708 1.55694 1.49557 1.44486 1.84683 1.68666 1.38587 1.40628 1.21155 0.94936 1.00359 0.92524 1.22294 0.98296 0.98401 1.00135 1.22546 0.93482 1.01466 0.83790 1.87894 1.54408 1.52926 1.35386 1.22549 0.89869 0.89687 0.99229 1.22496 0.98752 1.04490 0.94442 1.22796 0.93606 1.05312 1.00177 1.22842 0.97074 0.98611 1.06229 0.93019 0.88991 0.97854 0.83600 0.74580 0.88347 0.92063 0.89686 0.92839 0.89116 0.93243 0.89127 0.90668 0.88847 0.92161 0.90249 0.90602 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.50 12.27 55.43 0.68 -23.82 16 2 C 0.07 1.92 5.15 -17.82 -0.09 1.83 16 3 Si 0.89 20.88 29.56 -169.99 -5.02 15.85 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.48 -12.83 8.86 -34.44 -0.31 -13.14 16 8 H 0.06 1.59 7.85 -52.48 -0.41 1.18 16 9 C 0.06 1.47 1.57 -155.66 -0.25 1.23 16 10 C 0.10 2.27 5.18 -3.82 -0.02 2.25 16 11 N -0.64 -12.22 5.83 -107.96 -0.63 -12.84 16 12 C 0.10 1.59 2.30 -68.87 -0.16 1.43 16 13 H 0.11 1.78 7.78 -51.93 -0.40 1.37 16 14 C 0.45 6.88 5.81 36.01 0.21 7.09 16 15 O -0.52 -9.49 16.08 -18.75 -0.30 -9.80 16 16 O -0.51 -6.02 10.63 -39.25 -0.42 -6.43 16 17 C -0.07 -0.93 2.24 -90.44 -0.20 -1.13 16 18 C -0.15 -1.95 4.94 -26.59 -0.13 -2.08 16 19 C 0.06 0.72 6.84 37.21 0.25 0.98 16 20 O -0.39 -4.81 10.77 -35.23 -0.38 -5.19 16 21 C 0.06 0.67 6.84 37.20 0.25 0.92 16 22 C -0.16 -1.84 5.20 -26.59 -0.14 -1.98 16 23 C -0.18 -4.30 9.88 -26.73 -0.26 -4.56 16 24 C -0.21 -4.69 9.52 -26.73 -0.25 -4.94 16 25 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 26 H 0.09 2.29 6.73 -51.93 -0.35 1.94 16 27 H 0.00 0.08 7.47 -51.93 -0.39 -0.31 16 28 H 0.34 6.62 6.73 -39.29 -0.26 6.35 16 29 H 0.40 3.12 9.10 45.56 0.41 3.53 16 30 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.06 0.82 6.91 -51.93 -0.36 0.46 16 32 H 0.08 1.14 7.58 -51.93 -0.39 0.74 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 1.09 5.38 -51.93 -0.28 0.81 16 39 H 0.06 1.38 8.09 -51.93 -0.42 0.96 16 40 H 0.08 1.95 8.14 -51.93 -0.42 1.52 16 41 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 42 H 0.07 1.38 8.03 -51.93 -0.42 0.97 16 LS Contribution 335.90 15.07 5.06 5.06 Total: -1.00 -30.15 335.90 -7.89 -38.04 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -5.79 Total: 11.23 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -1.09 Total: -12.10 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.05 Total: -36.66 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -1.10 Total: -21.42 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.15 -7.89 -38.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608178576.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.694 kcal (2) G-P(sol) polarization free energy of solvation -30.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds