Wall clock time and date at job start Tue Mar 31 2020 05:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99773 * 2 1 4 4 H 1.48507 * 109.47134 * 240.00191 * 3 2 1 5 5 H 1.48505 * 109.47175 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47507 * 119.99940 * 3 2 1 7 7 C 1.37878 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00031 * 171.66263 * 7 2 1 9 9 C 1.50696 * 119.99924 * 351.66073 * 7 2 1 10 10 C 1.53002 * 115.55891 * 80.30848 * 9 7 2 11 11 N 1.46895 * 109.47535 * 39.04003 * 10 9 7 12 12 C 1.46899 * 111.00239 * 184.57150 * 11 10 9 13 13 H 1.09008 * 109.46827 * 35.00040 * 12 11 10 14 14 C 1.50693 * 109.47292 * 275.00112 * 12 11 10 15 15 O 1.20826 * 119.99835 * 359.97438 * 14 12 11 16 16 O 1.34231 * 120.00341 * 180.02562 * 14 12 11 17 17 C 1.53004 * 109.47202 * 154.99277 * 12 11 10 18 18 C 1.53176 * 109.54601 * 299.56393 * 17 12 11 19 19 C 1.53093 * 109.16140 * 183.15355 * 18 17 12 20 20 O 1.42903 * 109.41681 * 57.60204 * 19 18 17 21 21 C 1.42902 * 114.10048 * 298.84154 * 20 19 18 22 22 C 1.53094 * 109.41003 * 61.15836 * 21 20 19 23 23 C 1.52999 * 117.49985 * 294.61727 * 9 7 2 24 24 C 1.53005 * 60.03264 * 252.49878 * 23 9 7 25 25 H 0.97000 * 120.00365 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47045 * 159.04230 * 10 9 7 27 27 H 1.08994 * 109.47019 * 279.03435 * 10 9 7 28 28 H 1.00898 * 111.00205 * 60.61286 * 11 10 9 29 29 H 0.96689 * 117.00320 * 179.97438 * 16 14 12 30 30 H 1.09007 * 109.53789 * 59.82897 * 17 12 11 31 31 H 1.09000 * 109.51922 * 303.05323 * 18 17 12 32 32 H 1.09000 * 109.52762 * 63.24460 * 18 17 12 33 33 H 1.09001 * 109.47828 * 297.62206 * 19 18 17 34 34 H 1.09003 * 109.47985 * 177.58907 * 19 18 17 35 35 H 1.09000 * 109.48221 * 301.17745 * 21 20 19 36 36 H 1.08996 * 109.48273 * 181.14474 * 21 20 19 37 37 H 1.09009 * 109.51890 * 182.48516 * 22 21 20 38 38 H 1.08996 * 109.57717 * 62.33476 * 22 21 20 39 39 H 1.08994 * 117.49571 * 359.97438 * 23 9 7 40 40 H 1.09002 * 117.49776 * 145.00073 * 23 9 7 41 41 H 1.08999 * 117.50153 * 107.49950 * 24 23 9 42 42 H 1.08994 * 117.50073 * 252.52491 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0761 -1.1989 -0.1362 9 6 1.2631 -2.4923 0.1882 10 6 0.5672 -3.0423 -1.0585 11 7 1.4195 -2.8188 -2.2339 12 6 0.7373 -3.2364 -3.4660 13 1 -0.3290 -3.0269 -3.3798 14 6 0.9433 -4.7141 -3.6781 15 8 1.5923 -5.3536 -2.8846 16 8 0.4067 -5.3197 -4.7492 17 6 1.3140 -2.4651 -4.6549 18 6 1.0955 -0.9634 -4.4461 19 6 1.6044 -0.2059 -5.6753 20 8 0.9252 -0.6795 -6.8400 21 6 1.1316 -2.0671 -7.1121 22 6 0.6037 -2.8993 -5.9406 23 6 0.5834 -2.7279 1.5385 24 6 1.8501 -3.5050 1.1746 25 1 -0.4851 0.8400 0.0004 26 1 0.3916 -4.1110 -0.9350 27 1 -0.3855 -2.5314 -1.1980 28 1 2.3054 -3.2910 -2.1332 29 1 0.5664 -6.2687 -4.8428 30 1 2.3809 -2.6713 -4.7403 31 1 0.0323 -0.7654 -4.3106 32 1 1.6436 -0.6348 -3.5630 33 1 2.6759 -0.3719 -5.7867 34 1 1.4125 0.8598 -5.5507 35 1 2.1969 -2.2574 -7.2423 36 1 0.5992 -2.3421 -8.0226 37 1 0.8000 -3.9554 -6.1264 38 1 -0.4696 -2.7416 -5.8349 39 1 0.6730 -1.9440 2.2905 40 1 -0.3597 -3.2744 1.5387 41 1 2.7727 -3.2323 1.6870 42 1 1.7404 -4.5626 0.9349 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608178579.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:43 Heat of formation + Delta-G solvation = -117.077916 kcal Electronic energy + Delta-G solvation = -23861.044651 eV Core-core repulsion = 20420.581899 eV Total energy + Delta-G solvation = -3440.462751 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.51336 -38.93169 -37.06558 -36.03277 -35.28283 -32.50268 -31.80501 -30.83365 -27.99347 -25.40455 -24.09349 -23.90698 -22.97233 -21.11157 -20.58243 -19.96531 -18.95249 -17.98512 -16.98371 -16.30371 -15.80069 -15.75005 -15.15962 -14.76613 -14.64048 -14.46663 -14.07042 -13.61060 -13.23838 -13.14525 -12.95021 -12.34347 -12.07982 -11.99828 -11.69897 -11.44405 -11.34784 -11.05071 -10.90532 -10.78028 -10.71650 -10.48521 -10.44730 -10.22915 -10.11257 -9.99955 -9.51325 -9.26885 -8.79666 -8.31630 -8.01884 -7.72613 -5.91405 -3.91350 2.33972 3.21379 3.36975 3.42027 3.45048 4.05323 4.47688 4.54271 4.90911 5.01620 5.13912 5.21392 5.37526 5.39776 5.42848 5.45120 5.52627 5.64827 5.77401 5.85283 5.91052 6.00006 6.16693 6.19283 6.32143 6.36989 6.52590 6.56844 6.58646 6.62100 6.77985 6.81780 6.91121 7.10481 7.38152 7.39208 7.47104 7.82437 8.00165 8.02926 8.10946 8.56861 9.04190 9.70882 11.19139 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.013961 B = 0.007087 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.098356 B = 3949.957215 C = 5584.917698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.078 3.922 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.468 4.468 8 H 0.056 0.944 9 C 0.052 3.948 10 C 0.105 3.895 11 N -0.617 5.617 12 C 0.102 3.898 13 H 0.111 0.889 14 C 0.446 3.554 15 O -0.517 6.517 16 O -0.516 6.516 17 C -0.066 4.066 18 C -0.138 4.138 19 C 0.060 3.940 20 O -0.389 6.389 21 C 0.064 3.936 22 C -0.160 4.160 23 C -0.164 4.164 24 C -0.216 4.216 25 H 0.256 0.744 26 H 0.000 1.000 27 H 0.074 0.926 28 H 0.345 0.655 29 H 0.394 0.606 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.046 0.954 34 H 0.092 0.908 35 H 0.045 0.955 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.311 -6.174 -12.100 13.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.125 4.125 3 Si 0.711 3.289 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.506 4.506 8 H 0.074 0.926 9 C 0.051 3.949 10 C -0.024 4.024 11 N -0.247 5.247 12 C -0.012 4.012 13 H 0.129 0.871 14 C 0.286 3.714 15 O -0.404 6.404 16 O -0.326 6.326 17 C -0.085 4.085 18 C -0.175 4.175 19 C -0.017 4.017 20 O -0.308 6.308 21 C -0.013 4.013 22 C -0.198 4.198 23 C -0.202 4.202 24 C -0.253 4.253 25 H 0.066 0.934 26 H 0.018 0.982 27 H 0.092 0.908 28 H 0.165 0.835 29 H 0.252 0.748 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.032 -5.009 -11.992 12.996 hybrid contribution 0.681 -1.025 0.408 1.296 sum 0.649 -6.033 -11.584 13.077 Atomic orbital electron populations 1.69979 1.05756 1.26087 1.49885 1.24809 0.94582 0.98277 0.94813 0.86831 0.79722 0.83842 0.78496 1.20235 1.21617 1.20716 1.20103 0.92747 0.88373 1.49338 0.92608 1.18824 0.96663 0.93653 0.85715 1.21592 0.96376 0.94367 0.90036 1.60706 1.06185 1.58205 0.99622 1.21810 1.02115 0.82954 0.94318 0.87135 1.25777 0.74970 0.93377 0.77271 1.90706 1.38232 1.66814 1.44674 1.84747 1.72468 1.29011 1.46384 1.21009 0.99639 0.96051 0.91796 1.22093 1.03339 0.92998 0.99093 1.22675 0.95379 0.98829 0.84797 1.87892 1.72836 1.24409 1.45689 1.22515 0.99520 0.81709 0.97512 1.22478 1.01383 1.01071 0.94824 1.22553 0.93254 1.01522 1.02862 1.23066 0.97518 0.95638 1.09071 0.93384 0.98209 0.90764 0.83497 0.74790 0.91126 0.91116 0.87869 0.93543 0.88979 0.93718 0.89372 0.89343 0.90879 0.90195 0.92172 0.90568 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.96 13.19 55.43 0.73 -23.23 16 2 C 0.08 2.05 5.41 -17.82 -0.10 1.95 16 3 Si 0.88 20.74 29.55 -169.99 -5.02 15.71 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.47 -12.18 8.11 -34.44 -0.28 -12.46 16 8 H 0.06 1.48 7.83 -52.48 -0.41 1.07 16 9 C 0.05 1.25 1.65 -155.62 -0.26 0.99 16 10 C 0.10 2.29 5.49 -3.83 -0.02 2.27 16 11 N -0.62 -11.95 4.71 -107.95 -0.51 -12.45 16 12 C 0.10 1.61 2.11 -68.87 -0.15 1.47 16 13 H 0.11 1.79 7.73 -51.92 -0.40 1.38 16 14 C 0.45 6.70 7.43 36.00 0.27 6.97 16 15 O -0.52 -9.40 16.05 -18.75 -0.30 -9.70 16 16 O -0.52 -5.75 10.40 -39.26 -0.41 -6.16 16 17 C -0.07 -0.92 2.04 -90.44 -0.18 -1.10 16 18 C -0.14 -2.13 5.22 -26.59 -0.14 -2.26 16 19 C 0.06 0.82 6.84 37.21 0.25 1.07 16 20 O -0.39 -5.48 10.77 -35.23 -0.38 -5.86 16 21 C 0.06 0.74 6.84 37.21 0.25 0.99 16 22 C -0.16 -1.90 4.77 -26.59 -0.13 -2.02 16 23 C -0.16 -3.83 9.79 -26.73 -0.26 -4.09 16 24 C -0.22 -4.78 9.89 -26.69 -0.26 -5.04 16 25 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 26 H 0.00 0.00 7.47 -51.93 -0.39 -0.39 16 27 H 0.07 1.75 7.94 -51.93 -0.41 1.33 16 28 H 0.34 6.87 7.80 -39.29 -0.31 6.57 16 29 H 0.39 2.83 9.10 45.56 0.41 3.25 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.10 1.88 7.73 -51.93 -0.40 1.48 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 0.97 5.57 -51.92 -0.29 0.68 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.08 1.96 8.14 -51.93 -0.42 1.54 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 42 H 0.06 1.31 8.08 -51.93 -0.42 0.89 16 LS Contribution 340.55 15.07 5.13 5.13 Total: -1.00 -29.16 340.55 -7.73 -36.89 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -5.98 Total: 10.94 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -1.00 Total: -11.27 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.22 Total: -35.68 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -1.09 Total: -21.72 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.16 -7.73 -36.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608178579.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.188 kcal (2) G-P(sol) polarization free energy of solvation -29.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds