Wall clock time and date at job start Tue Mar 31 2020 05:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86801 * 120.00191 * 2 1 4 4 H 1.48504 * 109.46870 * 269.99617 * 3 2 1 5 5 H 1.48501 * 109.47298 * 29.99525 * 3 2 1 6 6 H 1.48500 * 109.47263 * 149.99965 * 3 2 1 7 7 C 1.40052 * 119.99744 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99480 * 179.97438 * 7 2 1 9 9 C 1.46378 * 119.99948 * 0.02562 * 7 2 1 10 10 O 1.21686 * 119.99657 * 359.97438 * 9 7 2 11 11 N 1.34773 * 119.99823 * 179.97438 * 9 7 2 12 12 C 1.46499 * 119.99894 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.46999 * 179.97438 * 12 11 9 14 14 H 1.08997 * 109.47149 * 305.00031 * 13 12 11 15 15 C 1.50706 * 109.47136 * 65.00063 * 13 12 11 16 16 O 1.20826 * 120.00089 * 26.97225 * 15 13 12 17 17 O 1.34228 * 120.00010 * 206.97417 * 15 13 12 18 18 C 1.53004 * 109.47176 * 184.99957 * 13 12 11 19 19 C 1.54240 * 108.89375 * 68.20168 * 18 13 12 20 20 C 1.50474 * 108.52602 * 159.26626 * 19 18 13 21 21 C 1.54067 * 112.50008 * 94.14532 * 20 19 18 22 22 C 1.54062 * 112.81657 * 318.28931 * 21 20 19 23 23 C 1.50477 * 112.49611 * 318.27754 * 22 21 20 24 24 C 1.45541 * 108.89583 * 305.31847 * 18 13 12 25 25 H 0.96999 * 119.99487 * 0.02562 * 1 2 3 26 26 H 0.97005 * 119.99919 * 359.97438 * 11 9 7 27 27 H 1.09001 * 109.47253 * 60.00405 * 12 11 9 28 28 H 1.08995 * 109.46944 * 299.99879 * 12 11 9 29 29 H 0.96698 * 117.00372 * 180.02562 * 17 15 13 30 30 H 1.08998 * 108.87197 * 186.71374 * 18 13 12 31 31 H 1.09005 * 109.62654 * 278.97552 * 19 18 13 32 32 H 1.08999 * 109.62788 * 39.55087 * 19 18 13 33 33 H 1.09002 * 108.87147 * 333.36822 * 20 19 18 34 34 H 1.08991 * 108.87681 * 214.92857 * 20 19 18 35 35 H 1.08999 * 108.81447 * 197.42073 * 21 20 19 36 36 H 1.09011 * 108.72075 * 79.08521 * 21 20 19 37 37 H 1.08999 * 108.87385 * 197.50637 * 22 21 20 38 38 H 1.08997 * 108.79942 * 79.00466 * 22 21 20 39 39 H 1.08993 * 109.62713 * 334.44974 * 23 22 21 40 40 H 1.08995 * 109.62951 * 213.86542 * 23 22 21 41 41 H 1.09001 * 108.89133 * 303.44565 * 24 18 13 42 42 H 1.08999 * 108.89555 * 61.92828 * 24 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4884 2.0463 -1.4001 5 1 1.4383 2.6527 0.6999 6 1 3.5384 1.4401 0.7000 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0001 9 6 1.2750 -2.4806 0.0005 10 8 0.0582 -2.4804 0.0005 11 7 1.9489 -3.6477 0.0005 12 6 1.2163 -4.9164 0.0011 13 6 2.2105 -6.0794 0.0003 14 1 2.8940 -5.9725 -0.8420 15 6 2.9944 -6.0710 1.2875 16 8 2.5106 -5.5935 2.2864 17 8 4.2300 -6.5940 1.3242 18 6 1.4496 -7.4008 -0.1248 19 6 0.8211 -7.4841 -1.5309 20 6 0.5289 -8.9276 -1.8393 21 6 -0.9159 -9.3260 -1.4824 22 6 -1.3837 -8.7359 -0.1384 23 6 -0.3198 -8.8076 0.9234 24 6 0.4530 -7.4729 0.9334 25 1 -0.4849 0.8401 -0.0004 26 1 2.9189 -3.6477 0.0002 27 1 0.5893 -4.9744 -0.8887 28 1 0.5901 -4.9739 0.8913 29 1 4.6936 -6.5661 2.1724 30 1 2.1525 -8.2252 -0.0044 31 1 -0.1055 -6.9103 -1.5523 32 1 1.5186 -7.0861 -2.2678 33 1 1.2178 -9.5553 -1.2739 34 1 0.6899 -9.1004 -2.9033 35 1 -0.9780 -10.4130 -1.4298 36 1 -1.5809 -8.9742 -2.2713 37 1 -2.2601 -9.2870 0.2027 38 1 -1.6607 -7.6927 -0.2902 39 1 0.3651 -9.6257 0.7006 40 1 -0.7838 -8.9694 1.8963 41 1 0.9517 -7.3609 1.8961 42 1 -0.2553 -6.6539 0.8076 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608179203.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:54 Heat of formation + Delta-G solvation = -160.889701 kcal Electronic energy + Delta-G solvation = -23373.078333 eV Core-core repulsion = 19930.715760 eV Total energy + Delta-G solvation = -3442.362573 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.78204 -38.90858 -37.20056 -35.97505 -34.69836 -32.71746 -32.19012 -31.99979 -28.99302 -26.50072 -24.87259 -24.25429 -24.07624 -21.21179 -19.84089 -19.41256 -19.28846 -17.88552 -17.20087 -16.42541 -16.01889 -15.42090 -15.19087 -15.00375 -14.55608 -14.12952 -13.91084 -13.62531 -13.57146 -13.02637 -12.78674 -12.74775 -12.27729 -12.15069 -12.05284 -11.65229 -11.39407 -11.19487 -11.12028 -10.97361 -10.83943 -10.73807 -10.47384 -10.37640 -10.35493 -10.32981 -10.22411 -10.16393 -9.94974 -8.81407 -7.58049 -7.46912 -6.14832 -4.59854 2.40170 3.15347 3.16564 3.23108 3.26895 4.12895 4.46171 4.49606 4.63535 4.70850 4.80436 4.98310 5.04056 5.16107 5.21844 5.27232 5.30028 5.37999 5.48847 5.62463 5.67500 5.74556 5.84634 5.86686 5.98215 6.04160 6.11845 6.13790 6.15709 6.23444 6.30373 6.37156 6.43282 6.46079 6.59239 6.67107 7.46935 7.93091 8.07553 8.10676 8.35283 9.06318 9.54795 10.63970 10.82605 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021337 B = 0.004337 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.952626 B = 6454.469493 C = 7140.928442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.558 3.442 10 O -0.580 6.580 11 N -0.768 5.768 12 C 0.144 3.856 13 C -0.089 4.089 14 H 0.105 0.895 15 C 0.478 3.522 16 O -0.495 6.495 17 O -0.522 6.522 18 C -0.063 4.063 19 C -0.113 4.113 20 C -0.116 4.116 21 C -0.116 4.116 22 C -0.123 4.123 23 C -0.112 4.112 24 C -0.132 4.132 25 H 0.268 0.732 26 H 0.376 0.624 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.405 0.595 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.355 -18.492 -1.702 19.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.084 0.916 9 C 0.362 3.638 10 O -0.462 6.462 11 N -0.423 5.423 12 C 0.019 3.981 13 C -0.109 4.109 14 H 0.123 0.877 15 C 0.319 3.681 16 O -0.380 6.380 17 O -0.334 6.334 18 C -0.082 4.082 19 C -0.151 4.151 20 C -0.154 4.154 21 C -0.154 4.154 22 C -0.160 4.160 23 C -0.149 4.149 24 C -0.169 4.169 25 H 0.078 0.922 26 H 0.207 0.793 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.263 0.737 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.896 -18.259 -1.791 18.573 hybrid contribution 1.370 0.851 0.634 1.733 sum 4.266 -17.407 -1.157 17.960 Atomic orbital electron populations 1.70026 1.07028 1.27177 1.35465 1.25697 0.94609 1.00226 0.92630 0.86383 0.80168 0.81476 0.78770 1.19751 1.20458 1.18971 1.20874 0.93516 0.89456 1.54408 0.91578 1.18159 0.87185 0.82298 0.76201 1.90594 1.14019 1.86804 1.54820 1.46139 1.08196 1.04990 1.83001 1.20964 0.92905 0.82080 1.02170 1.21593 0.97198 0.98751 0.93365 0.87674 1.23525 0.79452 0.73646 0.91448 1.90761 1.69429 1.41274 1.36577 1.84553 1.30395 1.75903 1.42598 1.19993 0.97197 0.94381 0.96625 1.21450 1.01680 0.96976 0.94961 1.21310 0.96691 0.96506 1.00890 1.21913 0.96392 0.99943 0.97132 1.21378 0.98100 1.01878 0.94652 1.21268 0.97775 0.97302 0.98589 1.20771 0.99080 0.98450 0.98602 0.92158 0.79350 0.91670 0.91565 0.73728 0.90687 0.90589 0.91240 0.92169 0.92255 0.92659 0.92328 0.92582 0.91520 0.91913 0.92033 0.91911 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.49 11.83 55.55 0.66 -22.84 16 2 C 0.09 2.51 5.50 -17.36 -0.10 2.42 16 3 Si 0.91 20.56 29.56 -169.99 -5.02 15.54 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.55 -15.84 9.54 -35.63 -0.34 -16.18 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 9 C 0.56 16.32 7.75 -12.99 -0.10 16.22 16 10 O -0.58 -19.15 15.02 5.20 0.08 -19.08 16 11 N -0.77 -17.70 5.34 -61.72 -0.33 -18.03 16 12 C 0.14 2.77 3.89 -4.04 -0.02 2.76 16 13 C -0.09 -1.27 2.05 -91.77 -0.19 -1.46 16 14 H 0.11 1.34 7.94 -51.93 -0.41 0.93 16 15 C 0.48 7.20 6.11 36.01 0.22 7.42 16 16 O -0.49 -9.32 15.91 -18.75 -0.30 -9.62 16 17 O -0.52 -6.07 13.42 -39.25 -0.53 -6.60 16 18 C -0.06 -0.73 1.48 -93.49 -0.14 -0.87 16 19 C -0.11 -1.22 4.28 -27.34 -0.12 -1.33 16 20 C -0.12 -1.05 5.31 -27.44 -0.15 -1.19 16 21 C -0.12 -1.04 5.85 -25.62 -0.15 -1.19 16 22 C -0.12 -1.23 5.32 -27.44 -0.15 -1.37 16 23 C -0.11 -1.16 5.61 -27.34 -0.15 -1.31 16 24 C -0.13 -1.66 3.92 -29.60 -0.12 -1.78 16 25 H 0.27 7.41 8.29 -40.82 -0.34 7.08 16 26 H 0.38 7.78 8.21 -40.82 -0.34 7.45 16 27 H 0.07 1.27 6.96 -51.93 -0.36 0.91 16 28 H 0.07 1.44 6.21 -51.93 -0.32 1.12 16 29 H 0.40 3.09 9.10 45.56 0.41 3.51 16 30 H 0.07 0.79 7.45 -51.93 -0.39 0.40 16 31 H 0.08 0.92 6.41 -51.93 -0.33 0.58 16 32 H 0.07 0.72 7.84 -51.93 -0.41 0.31 16 33 H 0.06 0.51 6.63 -51.93 -0.34 0.17 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.76 6.63 -51.93 -0.34 0.42 16 39 H 0.06 0.59 6.98 -51.93 -0.36 0.23 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.88 6.44 -51.93 -0.33 0.55 16 42 H 0.08 1.14 5.66 -51.93 -0.29 0.84 16 LS Contribution 328.31 15.07 4.95 4.95 Total: -1.00 -36.59 328.31 -7.47 -44.06 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -5.48 Total: 9.49 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -1.49 Total: 2.11 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.33 Total: -40.86 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -0.75 Total: -35.29 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -36.59 -7.47 -44.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608179203.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.831 kcal (2) G-P(sol) polarization free energy of solvation -36.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds