Wall clock time and date at job start Tue Mar 31 2020 05:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86801 * 119.99653 * 2 1 4 4 H 1.48504 * 109.47047 * 270.00213 * 3 2 1 5 5 H 1.48495 * 109.47192 * 30.00137 * 3 2 1 6 6 H 1.48498 * 109.47168 * 150.00215 * 3 2 1 7 7 C 1.40050 * 120.00288 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99609 * 180.02562 * 7 2 1 9 9 C 1.46372 * 120.00030 * 359.97438 * 7 2 1 10 10 O 1.21693 * 120.00075 * 0.02562 * 9 7 2 11 11 N 1.34768 * 120.00305 * 180.02562 * 9 7 2 12 12 C 1.46503 * 120.00462 * 179.97438 * 11 9 7 13 13 C 1.53003 * 109.47307 * 179.97438 * 12 11 9 14 14 H 1.08995 * 109.46609 * 55.00090 * 13 12 11 15 15 C 1.50701 * 109.47184 * 295.00459 * 13 12 11 16 16 O 1.20832 * 119.99678 * 240.00119 * 15 13 12 17 17 O 1.34225 * 120.00378 * 59.99327 * 15 13 12 18 18 C 1.53000 * 109.46984 * 175.00012 * 13 12 11 19 19 C 1.50476 * 108.87353 * 179.97438 * 18 13 12 20 20 C 1.54245 * 108.51856 * 214.93199 * 19 18 13 21 21 C 1.45542 * 112.40792 * 280.00900 * 20 19 18 22 22 C 1.54245 * 112.32700 * 61.98392 * 21 20 19 23 23 C 1.50546 * 108.48390 * 279.88442 * 22 21 20 24 24 C 1.54056 * 108.87935 * 302.97879 * 18 13 12 25 25 H 0.96999 * 120.00874 * 359.97438 * 1 2 3 26 26 H 0.96999 * 119.99856 * 359.97438 * 11 9 7 27 27 H 1.09004 * 109.46940 * 60.00066 * 12 11 9 28 28 H 1.08993 * 109.47353 * 300.00490 * 12 11 9 29 29 H 0.96696 * 117.00187 * 179.97438 * 17 15 13 30 30 H 1.09003 * 108.85174 * 61.44709 * 18 13 12 31 31 H 1.09002 * 109.62685 * 95.22749 * 19 18 13 32 32 H 1.08995 * 109.63266 * 334.64342 * 19 18 13 33 33 H 1.08997 * 108.89530 * 159.25760 * 20 19 18 34 34 H 1.09001 * 108.81525 * 40.70995 * 20 19 18 35 35 H 1.09002 * 108.89596 * 182.69054 * 21 20 19 36 36 H 1.09003 * 108.89788 * 301.28088 * 21 20 19 37 37 H 1.09000 * 109.62486 * 39.68278 * 22 21 20 38 38 H 1.08999 * 109.63051 * 160.25691 * 22 21 20 39 39 H 1.09000 * 108.92627 * 333.51136 * 23 22 21 40 40 H 1.09003 * 108.91864 * 215.01792 * 23 22 21 41 41 H 1.09000 * 108.81295 * 318.36452 * 24 18 13 42 42 H 1.08999 * 108.81700 * 76.64582 * 24 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4881 2.0465 -1.4001 5 1 1.4381 2.6527 0.7000 6 1 3.5382 1.4403 0.7000 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2127 -0.0001 9 6 1.2752 -2.4805 -0.0005 10 8 0.0583 -2.4806 -0.0005 11 7 1.9491 -3.6476 -0.0005 12 6 1.2167 -4.9164 0.0000 13 6 2.2110 -6.0793 -0.0007 14 1 2.8957 -5.9723 0.8405 15 6 2.9929 -6.0708 -1.2890 16 8 2.9465 -7.0240 -2.0301 17 8 3.7408 -5.0045 -1.6132 18 6 1.4503 -7.4008 0.1256 19 6 2.4400 -8.5343 0.1228 20 6 1.8061 -9.7363 -0.6070 21 6 0.8877 -10.4798 0.2427 22 6 -0.3077 -9.6217 0.7051 23 6 0.1383 -8.7645 1.8596 24 6 0.5980 -7.3647 1.4084 25 1 -0.4851 0.8400 0.0004 26 1 2.9191 -3.6476 -0.0009 27 1 0.5897 -4.9744 -0.8897 28 1 0.5903 -4.9740 0.8901 29 1 4.2247 -5.0455 -2.4494 30 1 0.7880 -7.5094 -0.7333 31 1 2.6795 -8.8137 1.1488 32 1 3.3472 -8.2271 -0.3973 33 1 2.5994 -10.4056 -0.9397 34 1 1.2634 -9.3717 -1.4792 35 1 0.5115 -11.3397 -0.3116 36 1 1.4277 -10.8349 1.1204 37 1 -0.6426 -8.9877 -0.1159 38 1 -1.1224 -10.2711 1.0258 39 1 0.9645 -9.2601 2.3694 40 1 -0.6903 -8.6548 2.5592 41 1 1.1853 -6.9133 2.2080 42 1 -0.2814 -6.7463 1.2289 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608179205.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:57 Heat of formation + Delta-G solvation = -159.530903 kcal Electronic energy + Delta-G solvation = -23308.293520 eV Core-core repulsion = 19865.989869 eV Total energy + Delta-G solvation = -3442.303651 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.70928 -38.75734 -37.25502 -35.95704 -34.83788 -32.67010 -32.26118 -31.97644 -29.03710 -26.41636 -25.22049 -24.03334 -23.48626 -20.76081 -20.57975 -19.59515 -19.03633 -17.93224 -17.07651 -16.59454 -15.75071 -15.58655 -15.22725 -14.80932 -14.30581 -14.19170 -13.91208 -13.77163 -13.70214 -12.99531 -12.68818 -12.56367 -12.44250 -12.10307 -12.03339 -11.55665 -11.36306 -11.22818 -11.11196 -10.94214 -10.74991 -10.69814 -10.53430 -10.43109 -10.40301 -10.23689 -10.18396 -10.12339 -9.93549 -8.83000 -7.59485 -7.47584 -6.16216 -4.60860 2.37932 3.15477 3.21038 3.22324 3.25716 4.11336 4.44542 4.56334 4.61607 4.69365 4.88317 5.02702 5.08208 5.21478 5.23956 5.33428 5.36685 5.39849 5.49782 5.55764 5.73063 5.79003 5.81966 5.96112 6.03167 6.07110 6.12228 6.17712 6.19211 6.28068 6.33467 6.36860 6.39679 6.47779 6.50055 6.72698 7.46221 7.97654 8.10171 8.11161 8.36685 9.05327 9.58017 10.62766 10.81506 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.027805 B = 0.004001 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.754949 B = 6997.087469 C = 7707.679938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.068 0.932 9 C 0.555 3.445 10 O -0.583 6.583 11 N -0.764 5.764 12 C 0.141 3.859 13 C -0.091 4.091 14 H 0.109 0.891 15 C 0.488 3.512 16 O -0.518 6.518 17 O -0.504 6.504 18 C -0.065 4.065 19 C -0.111 4.111 20 C -0.111 4.111 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.115 4.115 24 C -0.116 4.116 25 H 0.267 0.733 26 H 0.386 0.614 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.405 0.595 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.546 -16.825 1.385 17.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.086 0.914 9 C 0.359 3.641 10 O -0.466 6.466 11 N -0.422 5.422 12 C 0.015 3.985 13 C -0.111 4.111 14 H 0.127 0.873 15 C 0.331 3.669 16 O -0.407 6.407 17 O -0.314 6.314 18 C -0.084 4.084 19 C -0.148 4.148 20 C -0.149 4.149 21 C -0.154 4.154 22 C -0.158 4.158 23 C -0.153 4.153 24 C -0.153 4.153 25 H 0.078 0.922 26 H 0.220 0.780 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.264 0.736 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.230 -16.955 1.560 17.544 hybrid contribution 1.287 0.818 -0.644 1.656 sum 5.518 -16.137 0.916 17.079 Atomic orbital electron populations 1.70021 1.07041 1.27179 1.35551 1.25707 0.94595 1.00249 0.92664 0.86388 0.80162 0.81488 0.78784 1.19809 1.20518 1.18918 1.20877 0.93603 0.89347 1.54226 0.91409 1.18202 0.87152 0.82447 0.76282 1.90599 1.14135 1.86925 1.54989 1.46186 1.08967 1.04332 1.82706 1.20884 0.92905 0.82763 1.01907 1.21615 0.97720 0.98500 0.93227 0.87282 1.23439 0.76393 0.79013 0.88100 1.90678 1.62305 1.35667 1.52090 1.84602 1.58511 1.43583 1.44741 1.20821 0.96620 0.91497 0.99422 1.21451 0.98456 0.94748 1.00130 1.20353 0.98524 0.97047 0.98943 1.20520 0.96660 0.98308 0.99883 1.21384 0.97347 0.98233 0.98802 1.21326 1.00631 0.95471 0.97822 1.22038 0.99803 0.96984 0.96483 0.92176 0.78044 0.93124 0.91337 0.73629 0.90219 0.92167 0.91228 0.92802 0.91855 0.92779 0.92488 0.91385 0.92286 0.92215 0.92276 0.91700 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.11 11.83 55.55 0.66 -22.45 16 2 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 3 Si 0.91 20.12 29.56 -169.99 -5.02 15.10 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.54 -15.34 9.54 -35.63 -0.34 -15.68 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.34 16 9 C 0.56 15.74 7.75 -12.99 -0.10 15.64 16 10 O -0.58 -18.85 15.02 5.20 0.08 -18.77 16 11 N -0.76 -16.81 5.06 -61.72 -0.31 -17.13 16 12 C 0.14 2.61 4.80 -4.04 -0.02 2.59 16 13 C -0.09 -1.28 1.83 -91.77 -0.17 -1.44 16 14 H 0.11 1.38 8.14 -51.93 -0.42 0.95 16 15 C 0.49 7.12 6.95 36.01 0.25 7.37 16 16 O -0.52 -8.20 14.83 -18.76 -0.28 -8.48 16 17 O -0.50 -6.78 11.42 -39.24 -0.45 -7.23 16 18 C -0.06 -0.80 0.99 -91.33 -0.09 -0.89 16 19 C -0.11 -1.25 4.43 -27.34 -0.12 -1.37 16 20 C -0.11 -1.19 5.26 -29.60 -0.16 -1.35 16 21 C -0.12 -1.08 5.27 -29.60 -0.16 -1.24 16 22 C -0.12 -1.15 5.61 -27.31 -0.15 -1.31 16 23 C -0.12 -1.13 5.32 -27.39 -0.15 -1.27 16 24 C -0.12 -1.32 4.23 -25.61 -0.11 -1.43 16 25 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 26 H 0.39 7.64 6.92 -40.82 -0.28 7.35 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.07 1.30 6.44 -51.93 -0.33 0.96 16 29 H 0.41 3.70 9.10 45.56 0.41 4.11 16 30 H 0.08 1.09 6.52 -51.93 -0.34 0.75 16 31 H 0.06 0.62 6.98 -51.93 -0.36 0.25 16 32 H 0.07 0.87 5.62 -51.93 -0.29 0.58 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.76 7.46 -51.93 -0.39 0.38 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.50 7.46 -51.93 -0.39 0.11 16 37 H 0.07 0.72 6.96 -51.93 -0.36 0.36 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.55 6.63 -51.93 -0.34 0.20 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.73 7.98 -51.93 -0.41 0.31 16 42 H 0.07 0.88 7.20 -51.93 -0.37 0.51 16 LS Contribution 326.77 15.07 4.92 4.92 Total: -1.00 -35.05 326.77 -7.35 -42.40 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -5.55 Total: 9.67 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -1.40 Total: 1.97 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.35 Total: -39.57 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -0.65 Total: -34.48 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.05 -7.35 -42.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608179205.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.127 kcal (2) G-P(sol) polarization free energy of solvation -35.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds