Wall clock time and date at job start Tue Mar 31 2020 05:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99919 * 2 1 4 4 H 1.48494 * 109.46940 * 239.99643 * 3 2 1 5 5 H 1.48504 * 109.47116 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46877 * 119.99417 * 3 2 1 7 7 C 1.37879 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99520 * 174.34325 * 7 2 1 9 9 C 1.50696 * 119.99827 * 354.34778 * 7 2 1 10 10 C 1.53000 * 115.55220 * 93.58113 * 9 7 2 11 11 N 1.46909 * 109.46988 * 60.70835 * 10 9 7 12 12 C 1.46893 * 110.99751 * 185.13769 * 11 10 9 13 13 H 1.08999 * 109.47756 * 331.34726 * 12 11 10 14 14 C 1.53003 * 109.47355 * 211.34456 * 12 11 10 15 15 C 1.53003 * 109.46842 * 67.70507 * 14 12 11 16 16 H 1.09004 * 109.86489 * 52.31852 * 15 14 12 17 17 C 1.54096 * 109.87820 * 173.31775 * 15 14 12 18 18 C 1.54814 * 104.18401 * 121.45767 * 17 15 14 19 19 C 1.54989 * 102.09363 * 20.88475 * 18 17 15 20 20 O 1.43744 * 109.88067 * 291.15902 * 15 14 12 21 21 C 1.50706 * 109.47185 * 91.34920 * 12 11 10 22 22 O 1.20824 * 119.99811 * 359.97438 * 21 12 11 23 23 O 1.34227 * 120.00241 * 179.97438 * 21 12 11 24 24 C 1.53005 * 117.49562 * 239.24651 * 9 7 2 25 25 C 1.53004 * 117.50047 * 307.90626 * 9 7 2 26 26 H 0.96998 * 120.00295 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.47381 * 180.70600 * 10 9 7 28 28 H 1.08998 * 109.46961 * 300.71290 * 10 9 7 29 29 H 1.00897 * 110.99926 * 61.18436 * 11 10 9 30 30 H 1.08994 * 109.47170 * 187.70725 * 14 12 11 31 31 H 1.08999 * 109.46590 * 307.71499 * 14 12 11 32 32 H 1.09000 * 110.49282 * 240.12966 * 17 15 14 33 33 H 1.09002 * 110.48656 * 2.65541 * 17 15 14 34 34 H 1.09003 * 110.90699 * 139.07781 * 18 17 15 35 35 H 1.09002 * 110.90861 * 262.65112 * 18 17 15 36 36 H 1.09001 * 110.62517 * 81.47400 * 19 18 17 37 37 H 1.09004 * 110.61993 * 204.47650 * 19 18 17 38 38 H 0.96698 * 116.99940 * 179.97438 * 23 21 12 39 39 H 1.08997 * 117.49892 * 215.00319 * 24 9 7 40 40 H 1.09001 * 117.49992 * 0.02874 * 24 9 7 41 41 H 1.09004 * 117.49794 * 359.97438 * 25 9 7 42 42 H 1.08996 * 117.49485 * 144.97425 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0806 -1.1963 -0.0917 9 6 1.2565 -2.4959 0.1297 10 6 0.8859 -3.1776 -1.1890 11 7 2.1096 -3.4919 -1.9386 12 6 1.7893 -4.0372 -3.2644 13 1 0.8281 -4.5495 -3.2242 14 6 2.8775 -5.0270 -3.6853 15 6 2.8222 -6.2603 -2.7815 16 1 1.8084 -6.6604 -2.7624 17 6 3.7993 -7.3335 -3.2992 18 6 4.7590 -7.5784 -2.1094 19 6 3.9282 -7.0569 -0.9094 20 8 3.2378 -5.9101 -1.4507 21 6 1.7181 -2.9133 -4.2659 22 8 1.9136 -1.7749 -3.9114 23 8 1.4374 -3.1770 -5.5518 24 6 1.6049 -3.3960 1.3168 25 6 0.2768 -2.6350 1.2966 26 1 -0.4850 0.8400 -0.0004 27 1 0.3405 -4.0982 -0.9813 28 1 0.2594 -2.5095 -1.7799 29 1 2.6988 -4.1257 -1.4196 30 1 2.7147 -5.3274 -4.7203 31 1 3.8547 -4.5531 -3.5938 32 1 3.2629 -8.2483 -3.5511 33 1 4.3486 -6.9636 -4.1650 34 1 4.9780 -8.6405 -1.9985 35 1 5.6779 -7.0037 -2.2261 36 1 3.2159 -7.8126 -0.5782 37 1 4.5825 -6.7593 -0.0899 38 1 1.4023 -2.4235 -6.1569 39 1 1.5700 -4.4739 1.1584 40 1 2.3748 -3.0464 2.0047 41 1 0.1737 -1.7851 1.9713 42 1 -0.6319 -3.2119 1.1248 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608179343.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:16 Heat of formation + Delta-G solvation = -106.423068 kcal Electronic energy + Delta-G solvation = -23686.557932 eV Core-core repulsion = 20246.557210 eV Total energy + Delta-G solvation = -3440.000722 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.05926 -39.30182 -36.89894 -35.58216 -34.89862 -32.40290 -31.63396 -31.09420 -28.14562 -25.39509 -24.46622 -23.80152 -22.12771 -21.00186 -20.92099 -20.21966 -18.82107 -17.58864 -16.68965 -16.32052 -15.84632 -15.63480 -15.45541 -14.91987 -14.54420 -14.15588 -13.90889 -13.74138 -13.21325 -13.08586 -12.77439 -12.48118 -12.07452 -11.96611 -11.75759 -11.40858 -11.19390 -11.11901 -10.97513 -10.81606 -10.72460 -10.71466 -10.49713 -10.28007 -9.96685 -9.87216 -9.67245 -9.25266 -8.64571 -8.12782 -7.86224 -7.45693 -5.74690 -3.74501 2.82806 3.38905 3.51083 3.53436 3.59532 3.73310 4.40662 4.56563 4.65802 4.69735 4.86334 4.90349 5.08804 5.24214 5.38882 5.44821 5.54012 5.55632 5.56214 5.65644 5.68382 5.75854 5.82664 5.88281 5.93496 6.12793 6.34631 6.48183 6.64689 6.77129 6.87541 6.92447 6.97630 7.01368 7.30475 7.68949 7.70059 8.02759 8.18272 8.47674 8.53980 8.77484 9.23497 9.87642 11.35064 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015891 B = 0.005979 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.555743 B = 4681.909273 C = 5683.471969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.068 3.932 3 Si 0.887 3.113 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.459 4.459 8 H 0.058 0.942 9 C 0.052 3.948 10 C 0.111 3.889 11 N -0.647 5.647 12 C 0.105 3.895 13 H 0.072 0.928 14 C -0.119 4.119 15 C 0.074 3.926 16 H 0.070 0.930 17 C -0.149 4.149 18 C -0.155 4.155 19 C 0.048 3.952 20 O -0.365 6.365 21 C 0.461 3.539 22 O -0.464 6.464 23 O -0.535 6.535 24 C -0.215 4.215 25 C -0.151 4.151 26 H 0.255 0.745 27 H -0.005 1.005 28 H 0.066 0.934 29 H 0.362 0.638 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.094 0.906 38 H 0.401 0.599 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.467 -16.762 -8.356 19.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.133 4.133 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.497 4.497 8 H 0.076 0.924 9 C 0.051 3.949 10 C -0.017 4.017 11 N -0.288 5.288 12 C -0.007 4.007 13 H 0.089 0.911 14 C -0.157 4.157 15 C 0.016 3.984 16 H 0.088 0.912 17 C -0.187 4.187 18 C -0.193 4.193 19 C -0.029 4.029 20 O -0.284 6.284 21 C 0.299 3.701 22 O -0.345 6.345 23 O -0.347 6.347 24 C -0.253 4.253 25 C -0.189 4.189 26 H 0.064 0.936 27 H 0.013 0.987 28 H 0.084 0.916 29 H 0.191 0.809 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.258 0.742 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.452 -15.796 -8.069 18.557 hybrid contribution -0.029 0.429 -0.342 0.550 sum 5.423 -15.367 -8.411 18.338 Atomic orbital electron populations 1.70017 1.05766 1.25878 1.51150 1.24895 0.94714 0.98616 0.95088 0.86738 0.79671 0.83607 0.78410 1.20235 1.21729 1.20634 1.20221 0.92689 0.88250 1.48552 0.92388 1.18748 0.97658 0.94045 0.84465 1.21593 0.89049 0.95073 0.96024 1.59934 1.19631 1.48606 1.00625 1.20875 0.99132 0.89608 0.91120 0.91076 1.22022 1.00131 0.94335 0.99230 1.22815 0.97848 0.94281 0.83426 0.91232 1.22977 0.97522 0.99009 0.99209 1.23130 0.99317 1.01840 0.94982 1.23555 0.94435 0.88378 0.96511 1.88784 1.75592 1.36363 1.27672 1.23858 0.73713 0.91360 0.81163 1.90819 1.41921 1.23027 1.78780 1.84512 1.84272 1.44652 1.21290 1.23040 0.99934 0.95537 1.06743 1.22440 0.90658 1.00603 1.05179 0.93580 0.98677 0.91555 0.80916 0.89084 0.89532 0.90697 0.90190 0.90465 0.90364 0.92306 0.88750 0.74161 0.92200 0.90716 0.89725 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.98 12.40 55.43 0.69 -26.30 16 2 C 0.07 2.01 5.36 -17.82 -0.10 1.92 16 3 Si 0.89 23.21 29.54 -169.99 -5.02 18.19 16 4 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 5 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 6 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.46 -13.47 8.70 -34.44 -0.30 -13.77 16 8 H 0.06 1.74 7.82 -52.49 -0.41 1.33 16 9 C 0.05 1.34 1.73 -155.66 -0.27 1.08 16 10 C 0.11 2.64 5.28 -3.82 -0.02 2.62 16 11 N -0.65 -13.67 5.62 -107.95 -0.61 -14.27 16 12 C 0.11 1.78 2.54 -68.86 -0.18 1.61 16 13 H 0.07 1.14 7.73 -51.93 -0.40 0.73 16 14 C -0.12 -1.52 4.34 -26.73 -0.12 -1.63 16 15 C 0.07 0.84 3.39 -26.16 -0.09 0.76 16 16 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 17 C -0.15 -1.25 6.64 -25.20 -0.17 -1.42 16 18 C -0.15 -1.26 7.15 -24.72 -0.18 -1.44 16 19 C 0.05 0.49 7.72 38.21 0.29 0.78 16 20 O -0.37 -5.06 8.24 -35.23 -0.29 -5.35 16 21 C 0.46 8.43 7.68 36.01 0.28 8.71 16 22 O -0.46 -10.96 17.19 -18.75 -0.32 -11.29 16 23 O -0.53 -7.26 13.18 -39.25 -0.52 -7.78 16 24 C -0.22 -4.97 9.95 -26.69 -0.27 -5.23 16 25 C -0.15 -3.77 8.97 -26.69 -0.24 -4.01 16 26 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.00 -0.10 8.11 -51.93 -0.42 -0.53 16 28 H 0.07 1.78 8.13 -51.93 -0.42 1.36 16 29 H 0.36 7.27 5.12 -39.29 -0.20 7.06 16 30 H 0.09 0.94 7.93 -51.93 -0.41 0.53 16 31 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.62 7.70 -51.93 -0.40 0.22 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.40 3.91 9.10 45.56 0.41 4.33 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.07 1.73 8.14 -51.93 -0.42 1.30 16 41 H 0.08 2.28 7.99 -51.93 -0.41 1.86 16 42 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 346.26 15.07 5.22 5.22 Total: -1.00 -35.04 346.26 -8.22 -43.26 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -6.03 Total: 8.35 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -1.34 Total: -10.03 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.08 Total: -40.57 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -1.13 Total: -24.42 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.04 -8.22 -43.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608179343.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.164 kcal (2) G-P(sol) polarization free energy of solvation -35.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds