Wall clock time and date at job start Tue Mar 31 2020 05:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99573 * 2 1 4 4 H 1.48504 * 109.47001 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47294 * 300.00127 * 3 2 1 6 6 H 1.48494 * 109.47421 * 60.00078 * 3 2 1 7 7 C 1.37872 * 120.00617 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00271 * 173.47008 * 7 2 1 9 9 C 1.50703 * 119.99660 * 353.45997 * 7 2 1 10 10 C 1.53007 * 115.54709 * 85.13138 * 9 7 2 11 11 N 1.46905 * 109.46781 * 39.52711 * 10 9 7 12 12 C 1.46899 * 110.99910 * 185.41594 * 11 10 9 13 13 H 1.09002 * 109.46916 * 34.99960 * 12 11 10 14 14 C 1.53002 * 109.47395 * 155.00259 * 12 11 10 15 15 C 1.53002 * 109.46639 * 295.00051 * 14 12 11 16 16 H 1.09004 * 109.82385 * 54.43197 * 15 14 12 17 17 C 1.54380 * 109.90389 * 175.36494 * 15 14 12 18 18 C 1.55300 * 102.25402 * 140.91325 * 17 15 14 19 19 C 1.54941 * 100.94239 * 325.86803 * 18 17 15 20 20 O 1.43232 * 109.83307 * 293.54247 * 15 14 12 21 21 C 1.50704 * 109.47204 * 275.00207 * 12 11 10 22 22 O 1.20825 * 120.00068 * 0.02562 * 21 12 11 23 23 O 1.34225 * 120.00011 * 179.97438 * 21 12 11 24 24 C 1.52996 * 117.52183 * 230.83193 * 9 7 2 25 25 C 1.52994 * 117.50464 * 299.46557 * 9 7 2 26 26 H 0.96998 * 120.00866 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47474 * 279.52891 * 10 9 7 28 28 H 1.08997 * 109.47029 * 159.52340 * 10 9 7 29 29 H 1.00904 * 111.00146 * 61.46588 * 11 10 9 30 30 H 1.09003 * 109.47072 * 175.00206 * 14 12 11 31 31 H 1.09000 * 109.46924 * 54.99818 * 14 12 11 32 32 H 1.08998 * 110.85142 * 259.10768 * 17 15 14 33 33 H 1.09006 * 110.84958 * 22.72263 * 17 15 14 34 34 H 1.08996 * 111.12647 * 83.78540 * 18 17 15 35 35 H 1.09000 * 111.12661 * 207.90603 * 18 17 15 36 36 H 1.09006 * 110.31041 * 277.52783 * 19 18 17 37 37 H 1.09000 * 110.31432 * 155.36092 * 19 18 17 38 38 H 0.96703 * 117.00661 * 179.97438 * 23 21 12 39 39 H 1.09001 * 117.49820 * 214.97645 * 24 9 7 40 40 H 1.09002 * 117.49497 * 359.97438 * 24 9 7 41 41 H 1.09001 * 117.49416 * 359.97438 * 25 9 7 42 42 H 1.08992 * 117.50439 * 144.96946 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1939 -0.0005 8 1 3.0793 -1.1969 -0.1069 9 6 1.2585 -2.4949 0.1475 10 6 0.6950 -3.0835 -1.1475 11 7 1.6637 -2.8909 -2.2350 12 6 1.1050 -3.3281 -3.5213 13 1 0.0376 -3.1084 -3.5473 14 6 1.8064 -2.5861 -4.6607 15 6 1.4886 -1.0923 -4.5682 16 1 1.7472 -0.7201 -3.5769 17 6 2.2833 -0.3184 -5.6420 18 6 1.2513 0.7408 -6.1162 19 6 -0.0698 -0.0590 -5.9909 20 8 0.0955 -0.8753 -4.8206 21 6 1.3165 -4.8115 -3.6826 22 8 1.8749 -5.4400 -2.8149 23 8 0.8836 -5.4347 -4.7898 24 6 1.7520 -3.4756 1.2131 25 6 0.4490 -2.7033 1.4290 26 1 -0.4851 0.8400 0.0004 27 1 -0.2386 -2.5805 -1.3992 28 1 0.5086 -4.1488 -1.0115 29 1 2.5302 -3.3682 -2.0362 30 1 1.4553 -2.9737 -5.6171 31 1 2.8834 -2.7341 -4.5819 32 1 3.1592 0.1615 -5.2056 33 1 2.5688 -0.9765 -6.4628 34 1 1.2488 1.6092 -5.4575 35 1 1.4367 1.0350 -7.1493 36 1 -0.2181 -0.6849 -6.8709 37 1 -0.9126 0.6202 -5.8625 38 1 1.0423 -6.3868 -4.8484 39 1 1.6753 -4.5401 0.9916 40 1 2.6169 -3.1801 1.8071 41 1 0.4564 -1.8995 2.1652 42 1 -0.4851 -3.2593 1.3494 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608179347.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:20 Heat of formation + Delta-G solvation = -115.448886 kcal Electronic energy + Delta-G solvation = -23733.439763 eV Core-core repulsion = 20293.047652 eV Total energy + Delta-G solvation = -3440.392111 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.25987 -39.08900 -36.98440 -35.94458 -34.82496 -31.93451 -31.73319 -31.12997 -28.02675 -25.41152 -24.46433 -23.81212 -21.69071 -21.00947 -20.75723 -20.09625 -18.93514 -17.88203 -16.87369 -16.65699 -15.87932 -15.57419 -15.35690 -14.57115 -14.41244 -14.15995 -13.81283 -13.38075 -13.26830 -13.10484 -12.69909 -12.58510 -11.83787 -11.69986 -11.53879 -11.40497 -11.32601 -11.21376 -10.92653 -10.88950 -10.67290 -10.62552 -10.56491 -10.37273 -10.20108 -10.01795 -9.36985 -9.10832 -8.73341 -8.24566 -7.93887 -7.66499 -5.84147 -3.84647 2.41138 3.29764 3.37530 3.46040 3.49607 4.14552 4.54816 4.68794 4.73778 4.96129 5.06290 5.27502 5.36009 5.44626 5.48345 5.49859 5.57731 5.59128 5.82278 5.88438 5.89197 5.97641 6.07106 6.17590 6.22435 6.27840 6.41137 6.60314 6.66486 6.68876 6.76243 6.85720 6.98606 7.19833 7.44492 7.48005 7.56510 7.89351 8.06663 8.09989 8.18331 8.64340 9.11601 9.77294 11.26166 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.011240 B = 0.008316 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.473249 B = 3366.352154 C = 5269.466926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.075 3.925 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.289 1.289 7 C -0.464 4.464 8 H 0.057 0.943 9 C 0.050 3.950 10 C 0.104 3.896 11 N -0.619 5.619 12 C 0.099 3.901 13 H 0.119 0.881 14 C -0.105 4.105 15 C 0.087 3.913 16 H 0.113 0.887 17 C -0.152 4.152 18 C -0.157 4.157 19 C 0.051 3.949 20 O -0.370 6.370 21 C 0.445 3.555 22 O -0.518 6.518 23 O -0.521 6.521 24 C -0.217 4.217 25 C -0.157 4.157 26 H 0.255 0.745 27 H 0.073 0.927 28 H 0.001 0.999 29 H 0.343 0.657 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.397 0.603 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.480 -3.527 -13.355 13.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.127 4.127 3 Si 0.710 3.290 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.215 1.215 7 C -0.503 4.503 8 H 0.075 0.925 9 C 0.049 3.951 10 C -0.025 4.025 11 N -0.250 5.250 12 C -0.014 4.014 13 H 0.136 0.864 14 C -0.143 4.143 15 C 0.029 3.971 16 H 0.131 0.869 17 C -0.189 4.189 18 C -0.195 4.195 19 C -0.026 4.026 20 O -0.289 6.289 21 C 0.285 3.715 22 O -0.406 6.406 23 O -0.331 6.331 24 C -0.254 4.254 25 C -0.195 4.195 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.019 0.981 29 H 0.164 0.836 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.255 0.745 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.082 -2.566 -13.043 13.337 hybrid contribution 0.659 -0.705 -0.031 0.966 sum 1.741 -3.272 -13.074 13.589 Atomic orbital electron populations 1.70004 1.05688 1.25764 1.50089 1.24835 0.94596 0.98278 0.95029 0.86712 0.80274 0.84703 0.77264 1.19965 1.21266 1.21514 1.20169 0.92475 0.88211 1.49403 0.92507 1.18825 0.97279 0.93811 0.85159 1.21610 0.94876 0.94546 0.91422 1.60726 1.06983 1.57705 0.99556 1.21702 1.03113 0.82473 0.94151 0.86378 1.21844 1.00371 0.95710 0.96384 1.22807 0.80515 0.93319 1.00428 0.86907 1.23188 0.99203 0.97669 0.98880 1.23248 0.95329 0.99062 1.01836 1.23290 0.97580 0.92822 0.88936 1.88504 1.24439 1.71045 1.44901 1.25849 0.73847 0.93591 0.78170 1.90699 1.40133 1.67817 1.41980 1.84658 1.76152 1.28488 1.43759 1.23082 0.98410 0.95629 1.08327 1.22476 0.92038 1.01119 1.03900 0.93535 0.90849 0.98115 0.83635 0.90979 0.90743 0.90034 0.91016 0.90356 0.90580 0.92944 0.90273 0.74537 0.92036 0.90622 0.90090 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.75 12.93 55.43 0.72 -24.04 16 2 C 0.07 2.03 5.39 -17.82 -0.10 1.93 16 3 Si 0.88 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.46 -12.39 8.15 -34.44 -0.28 -12.67 16 8 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 9 C 0.05 1.23 1.74 -155.66 -0.27 0.96 16 10 C 0.10 2.36 5.49 -3.82 -0.02 2.34 16 11 N -0.62 -12.42 4.76 -107.94 -0.51 -12.93 16 12 C 0.10 1.67 2.46 -68.86 -0.17 1.51 16 13 H 0.12 2.13 7.33 -51.93 -0.38 1.75 16 14 C -0.10 -1.51 4.43 -26.73 -0.12 -1.63 16 15 C 0.09 1.37 3.45 -26.01 -0.09 1.28 16 16 H 0.11 2.21 7.63 -51.93 -0.40 1.81 16 17 C -0.15 -1.88 6.55 -24.79 -0.16 -2.04 16 18 C -0.16 -1.83 7.16 -24.49 -0.18 -2.01 16 19 C 0.05 0.66 7.78 38.18 0.30 0.95 16 20 O -0.37 -6.31 10.55 -35.23 -0.37 -6.69 16 21 C 0.45 7.14 7.51 36.01 0.27 7.41 16 22 O -0.52 -9.78 16.05 -18.75 -0.30 -10.08 16 23 O -0.52 -6.55 13.23 -39.24 -0.52 -7.07 16 24 C -0.22 -4.94 9.88 -26.73 -0.26 -5.20 16 25 C -0.16 -3.79 9.46 -26.74 -0.25 -4.04 16 26 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.07 1.81 7.92 -51.93 -0.41 1.40 16 28 H 0.00 0.02 7.48 -51.93 -0.39 -0.37 16 29 H 0.34 6.97 7.81 -39.29 -0.31 6.66 16 30 H 0.07 0.94 8.00 -51.93 -0.42 0.52 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.76 7.85 -51.93 -0.41 0.35 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.40 3.27 9.10 45.56 0.41 3.68 16 39 H 0.06 1.32 8.08 -51.93 -0.42 0.90 16 40 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 41 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 42 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 348.44 15.07 5.25 5.25 Total: -1.00 -30.62 348.44 -8.15 -38.77 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -6.06 Total: 11.84 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -1.33 Total: -11.20 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.20 Total: -36.97 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -1.19 Total: -23.84 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.62 -8.15 -38.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608179347.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.676 kcal (2) G-P(sol) polarization free energy of solvation -30.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds