Wall clock time and date at job start Tue Mar 31 2020 05:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99672 * 2 1 4 4 H 1.48504 * 109.46692 * 267.75194 * 3 2 1 5 5 H 1.48496 * 109.47402 * 27.75063 * 3 2 1 6 6 H 1.48494 * 109.47041 * 147.75612 * 3 2 1 7 7 C 1.37870 * 120.00294 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99763 * 358.37208 * 7 2 1 9 9 C 1.50698 * 120.00445 * 178.36688 * 7 2 1 10 10 C 1.53008 * 115.54593 * 86.25960 * 9 7 2 11 11 N 1.46890 * 109.46909 * 65.29219 * 10 9 7 12 12 C 1.46906 * 111.00085 * 174.18857 * 11 10 9 13 13 C 1.53005 * 109.51934 * 294.95093 * 12 11 10 14 14 C 1.50701 * 109.47132 * 299.16433 * 13 12 11 15 15 O 1.20830 * 119.99768 * 6.44645 * 14 13 12 16 16 O 1.34226 * 120.00052 * 186.44634 * 14 13 12 17 17 C 1.53178 * 109.52075 * 55.07363 * 12 11 10 18 18 C 1.53178 * 109.03451 * 62.93260 * 17 12 11 19 19 C 1.53095 * 109.16713 * 56.97746 * 18 17 12 20 20 O 1.42902 * 109.40958 * 302.39394 * 19 18 17 21 21 C 1.43035 * 114.13764 * 61.16331 * 20 19 18 22 22 C 1.52995 * 117.50430 * 231.93148 * 9 7 2 23 23 C 1.52998 * 117.50058 * 300.59807 * 9 7 2 24 24 H 0.97002 * 120.00217 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46802 * 305.28877 * 10 9 7 26 26 H 1.08997 * 109.46713 * 185.29314 * 10 9 7 27 27 H 1.00907 * 110.99963 * 298.13838 * 11 10 9 28 28 H 1.09001 * 109.46839 * 59.16312 * 13 12 11 29 29 H 1.09000 * 109.47147 * 179.16399 * 13 12 11 30 30 H 0.96697 * 116.99948 * 180.02562 * 16 14 13 31 31 H 1.08999 * 109.53968 * 182.79788 * 17 12 11 32 32 H 1.08990 * 109.54571 * 302.97075 * 17 12 11 33 33 H 1.09002 * 109.51930 * 176.88605 * 18 17 12 34 34 H 1.08995 * 109.51922 * 297.00856 * 18 17 12 35 35 H 1.09003 * 109.47720 * 62.37364 * 19 18 17 36 36 H 1.08999 * 109.48088 * 182.40784 * 19 18 17 37 37 H 1.09000 * 109.56494 * 178.88896 * 21 20 19 38 38 H 1.08992 * 109.46876 * 58.80225 * 21 20 19 39 39 H 1.08996 * 117.50027 * 214.99980 * 22 9 7 40 40 H 1.08997 * 117.49862 * 0.02562 * 22 9 7 41 41 H 1.09003 * 117.49858 * 359.96557 * 23 9 7 42 42 H 1.08991 * 117.50461 * 144.96892 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5441 2.0190 -1.3991 5 1 1.4236 2.6660 0.6519 6 1 3.5221 1.4545 0.7469 7 6 2.0046 -1.1940 0.0005 8 1 1.4649 -2.1292 0.0275 9 6 3.5111 -1.1943 -0.0367 10 6 4.2047 -1.0841 1.3227 11 7 3.9129 -2.2829 2.1198 12 6 4.6727 -2.2770 3.3771 13 6 6.1687 -2.3734 3.0709 14 6 6.4500 -3.6613 2.3406 15 8 5.5355 -4.3679 1.9878 16 8 7.7163 -4.0235 2.0820 17 6 4.3891 -0.9796 4.1405 18 6 2.9028 -0.9309 4.5078 19 6 2.5458 -2.1755 5.3247 20 8 2.8629 -3.3464 4.5692 21 6 4.2486 -3.4706 4.2369 22 6 4.1912 -2.0468 -1.1097 23 6 4.1885 -0.5209 -1.2319 24 1 -0.4850 0.8400 0.0004 25 1 3.8388 -0.2013 1.8468 26 1 5.2813 -0.9989 1.1754 27 1 2.9230 -2.3679 2.2960 28 1 6.4671 -1.5300 2.4482 29 1 6.7325 -2.3540 4.0035 30 1 7.8468 -4.8577 1.6108 31 1 4.9904 -0.9524 5.0492 32 1 4.6390 -0.1248 3.5122 33 1 2.7029 -0.0373 5.0993 34 1 2.3033 -0.9070 3.5979 35 1 3.1163 -2.1766 6.2535 36 1 1.4799 -2.1675 5.5525 37 1 4.4093 -4.3943 3.6811 38 1 4.8413 -3.4885 5.1514 39 1 5.1328 -2.5292 -0.8473 40 1 3.5490 -2.6071 -1.7891 41 1 3.5444 -0.0781 -1.9917 42 1 5.1279 0.0008 -1.0499 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608179528.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:02 Heat of formation + Delta-G solvation = -103.538473 kcal Electronic energy + Delta-G solvation = -24561.520198 eV Core-core repulsion = 21121.644561 eV Total energy + Delta-G solvation = -3439.875637 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.59639 -39.19290 -37.10151 -35.97142 -35.11968 -32.11269 -32.00238 -30.81153 -28.04774 -25.90830 -25.24520 -23.99619 -22.94883 -21.45352 -20.97154 -18.97777 -18.63049 -17.74539 -16.56415 -16.35087 -16.14922 -15.86995 -15.27198 -15.07242 -14.89119 -14.47214 -13.95339 -13.89325 -13.41318 -12.81992 -12.67158 -12.52241 -12.33150 -12.21524 -12.04871 -11.60855 -11.51693 -11.24414 -11.06998 -10.91981 -10.77404 -10.58987 -10.36407 -10.23144 -10.00439 -9.87234 -9.51713 -9.25498 -8.89144 -8.55919 -8.36866 -7.48800 -6.05515 -4.06920 2.52603 3.19470 3.29240 3.38163 3.41399 4.06971 4.44743 4.54191 4.76088 4.83843 5.00216 5.08232 5.17429 5.21140 5.25154 5.39196 5.49274 5.56691 5.63885 5.72134 5.73890 5.87907 5.93346 5.99750 6.09785 6.19594 6.22586 6.35912 6.39120 6.51780 6.59385 6.61272 6.75439 6.88547 7.17042 7.27176 7.40844 7.82697 7.86475 8.17353 8.27347 8.60785 9.01926 9.58409 11.06370 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015520 B = 0.007832 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.718226 B = 3574.107570 C = 4579.225518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.076 3.924 3 Si 0.878 3.122 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.261 1.261 7 C -0.479 4.479 8 H 0.079 0.921 9 C 0.011 3.989 10 C 0.092 3.908 11 N -0.644 5.644 12 C 0.092 3.908 13 C -0.100 4.100 14 C 0.470 3.530 15 O -0.467 6.467 16 O -0.532 6.532 17 C -0.152 4.152 18 C -0.161 4.161 19 C 0.060 3.940 20 O -0.371 6.371 21 C 0.066 3.934 22 C -0.164 4.164 23 C -0.210 4.210 24 H 0.262 0.738 25 H 0.030 0.970 26 H 0.039 0.961 27 H 0.363 0.637 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.405 0.595 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.042 0.958 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.410 -3.018 10.337 17.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.126 4.126 3 Si 0.707 3.293 4 H -0.205 1.205 5 H -0.225 1.225 6 H -0.186 1.186 7 C -0.517 4.517 8 H 0.097 0.903 9 C 0.010 3.990 10 C -0.037 4.037 11 N -0.278 5.278 12 C -0.001 4.001 13 C -0.138 4.138 14 C 0.310 3.690 15 O -0.351 6.351 16 O -0.345 6.345 17 C -0.191 4.191 18 C -0.199 4.199 19 C -0.017 4.017 20 O -0.289 6.289 21 C -0.011 4.011 22 C -0.201 4.201 23 C -0.248 4.248 24 H 0.072 0.928 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.186 0.814 28 H 0.124 0.876 29 H 0.116 0.884 30 H 0.263 0.737 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.061 0.939 36 H 0.111 0.889 37 H 0.135 0.865 38 H 0.061 0.939 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 13.186 -3.271 10.063 16.907 hybrid contribution 0.323 1.595 0.107 1.631 sum 13.509 -1.676 10.171 16.992 Atomic orbital electron populations 1.69911 1.06256 1.26812 1.50725 1.24977 0.94506 0.98786 0.94336 0.86899 0.80246 0.83616 0.78571 1.20545 1.22461 1.18576 1.20329 0.86619 0.94327 1.50403 0.90300 1.19284 0.94769 0.99063 0.85861 1.21768 0.96598 0.90610 0.94751 1.60521 1.14110 1.39433 1.13727 1.21325 0.91854 0.94932 0.92002 1.21419 0.97500 0.93965 1.00940 1.23229 0.79789 0.88079 0.77879 1.90770 1.44860 1.52553 1.46934 1.84527 1.31749 1.45218 1.72958 1.22316 0.97004 0.99371 1.00425 1.22211 0.96673 0.98581 1.02401 1.22573 1.01030 0.85171 0.92892 1.88049 1.25031 1.42168 1.73616 1.22947 0.82420 0.99456 0.96229 1.22609 1.00983 0.91694 1.04813 1.23014 1.01245 0.95818 1.04713 0.92773 0.95200 0.94229 0.81366 0.87563 0.88379 0.73734 0.91980 0.90782 0.91045 0.89504 0.93852 0.88920 0.86500 0.93945 0.91338 0.90034 0.89691 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.96 55.43 0.77 -26.30 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.88 21.50 24.91 -169.99 -4.23 17.27 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.26 -5.99 5.73 56.52 0.32 -5.67 16 7 C -0.48 -13.18 8.93 -34.44 -0.31 -13.48 16 8 H 0.08 2.43 8.06 -52.48 -0.42 2.01 16 9 C 0.01 0.26 1.03 -155.66 -0.16 0.10 16 10 C 0.09 1.84 4.29 -3.83 -0.02 1.83 16 11 N -0.64 -12.12 4.64 -99.82 -0.46 -12.58 16 12 C 0.09 1.35 0.28 -131.46 -0.04 1.31 16 13 C -0.10 -1.24 4.68 -27.88 -0.13 -1.37 16 14 C 0.47 6.42 7.82 36.01 0.28 6.70 16 15 O -0.47 -7.99 13.78 -18.75 -0.26 -8.24 16 16 O -0.53 -5.76 13.42 -39.25 -0.53 -6.29 16 17 C -0.15 -2.05 4.38 -26.55 -0.12 -2.16 16 18 C -0.16 -2.33 5.80 -26.59 -0.15 -2.48 16 19 C 0.06 0.81 6.84 37.21 0.25 1.07 16 20 O -0.37 -6.03 10.11 -35.23 -0.36 -6.39 16 21 C 0.07 0.96 5.40 37.21 0.20 1.16 16 22 C -0.16 -3.55 9.96 -26.69 -0.27 -3.81 16 23 C -0.21 -4.58 7.67 -26.69 -0.20 -4.79 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.03 0.63 4.87 -51.93 -0.25 0.38 16 26 H 0.04 0.73 6.12 -51.93 -0.32 0.41 16 27 H 0.36 7.81 6.36 -39.29 -0.25 7.56 16 28 H 0.11 1.32 6.37 -51.93 -0.33 0.99 16 29 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.40 2.85 9.10 45.56 0.41 3.26 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.07 6.31 -51.93 -0.33 0.74 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.09 1.57 7.07 -51.93 -0.37 1.20 16 35 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.12 1.89 5.77 -51.93 -0.30 1.59 16 38 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 41 H 0.08 1.96 7.35 -51.93 -0.38 1.58 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 322.29 15.07 4.86 4.86 Total: -1.00 -31.86 322.29 -6.51 -38.37 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -5.55 Total: 13.20 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -0.75 Total: -13.89 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.31 Total: -38.88 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -1.14 Total: -20.92 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.23 Total: 17.27 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.86 -6.51 -38.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608179528.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.167 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds