Wall clock time and date at job start Tue Mar 31 2020 05:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00368 * 2 1 4 4 H 1.48500 * 109.47376 * 270.00083 * 3 2 1 5 5 H 1.48503 * 109.47203 * 30.00094 * 3 2 1 6 6 H 1.48497 * 109.47212 * 149.99693 * 3 2 1 7 7 C 1.37877 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99622 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00085 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.47210 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47050 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46838 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.46998 * 179.97438 * 12 11 10 14 14 O 1.21280 * 120.00231 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00042 * 180.02562 * 13 12 11 16 16 C 1.47416 * 125.64889 * 354.93043 * 15 13 12 17 17 C 1.54909 * 104.83310 * 155.89448 * 16 15 13 18 18 C 1.55153 * 101.58146 * 37.01254 * 17 16 15 19 19 C 1.47024 * 125.64660 * 174.96009 * 15 13 12 20 20 H 1.08998 * 109.88081 * 300.60665 * 19 15 13 21 21 C 1.53005 * 109.88519 * 61.62087 * 19 15 13 22 22 C 1.50696 * 109.47131 * 185.68973 * 21 19 15 23 23 O 1.20830 * 119.99880 * 5.49406 * 22 21 19 24 24 O 1.34228 * 120.00013 * 185.49167 * 22 21 19 25 25 H 0.96997 * 119.99694 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.46977 * 60.00272 * 9 7 2 27 27 H 1.08995 * 109.47318 * 300.00155 * 9 7 2 28 28 H 1.08996 * 109.47183 * 60.00087 * 10 9 7 29 29 H 1.08995 * 109.46852 * 300.00128 * 10 9 7 30 30 H 1.08996 * 109.47199 * 59.99923 * 11 10 9 31 31 H 1.08995 * 109.47256 * 299.99707 * 11 10 9 32 32 H 1.08996 * 109.47151 * 60.00062 * 12 11 10 33 33 H 1.08995 * 109.47096 * 299.99974 * 12 11 10 34 34 H 1.09004 * 110.37274 * 274.73220 * 16 15 13 35 35 H 1.08998 * 110.36654 * 37.05660 * 16 15 13 36 36 H 1.08999 * 111.00391 * 155.08377 * 17 16 15 37 37 H 1.08996 * 111.00385 * 278.93466 * 17 16 15 38 38 H 1.08998 * 110.71911 * 206.13648 * 18 17 16 39 39 H 1.09001 * 110.87484 * 82.93275 * 18 17 16 40 40 H 1.08999 * 109.46796 * 305.68570 * 21 19 15 41 41 H 1.09003 * 109.47030 * 65.68812 * 21 19 15 42 42 H 0.96696 * 116.99677 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6367 0.0001 11 6 5.5514 -2.6368 0.0001 12 6 6.0613 -4.0793 0.0009 13 6 7.5683 -4.0794 0.0003 14 8 8.1748 -3.0291 -0.0002 15 7 8.2421 -5.2466 0.0003 16 6 7.6384 -6.5872 0.1067 17 6 8.6714 -7.5403 -0.5446 18 6 10.0117 -6.9053 -0.0888 19 6 9.7012 -5.3937 -0.1052 20 1 10.0519 -4.9509 -1.0374 21 6 10.3804 -4.7100 1.0833 22 6 11.8752 -4.7442 0.8953 23 8 12.3453 -5.1721 -0.1323 24 8 12.6845 -4.2993 1.8694 25 1 -0.4849 0.8400 -0.0004 26 1 3.8751 -0.6798 0.8894 27 1 3.8745 -0.6809 -0.8904 28 1 3.6578 -3.1507 -0.8896 29 1 3.6584 -3.1503 0.8903 30 1 5.9148 -2.1229 0.8900 31 1 5.9148 -2.1231 -0.8899 32 1 5.6980 -4.5935 -0.8888 33 1 5.6980 -4.5926 0.8911 34 1 7.4846 -6.8522 1.1528 35 1 6.6943 -6.6223 -0.4370 36 1 8.5672 -8.5535 -0.1565 37 1 8.5830 -7.5287 -1.6309 38 1 10.8098 -7.1427 -0.7921 39 1 10.2751 -7.2340 0.9166 40 1 10.0458 -3.6746 1.1466 41 1 10.1177 -5.2338 2.0024 42 1 13.6361 -4.3416 1.7030 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608179993.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:00 Heat of formation + Delta-G solvation = -151.585301 kcal Electronic energy + Delta-G solvation = -22053.009312 eV Core-core repulsion = 18611.050208 eV Total energy + Delta-G solvation = -3441.959104 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.99519 -40.00912 -37.81308 -36.44278 -35.04961 -32.86977 -32.25025 -31.81987 -29.96547 -27.28226 -26.08685 -23.71697 -22.15049 -22.04230 -20.78415 -20.02329 -19.06931 -18.34437 -17.50399 -16.98314 -16.54990 -16.25419 -15.98677 -15.61147 -14.93290 -14.21485 -14.15519 -14.10299 -13.73465 -13.38106 -13.12791 -12.95598 -12.65963 -12.45015 -12.15940 -12.11571 -11.90112 -11.73251 -11.55157 -11.30430 -11.20150 -11.09934 -10.94026 -10.72896 -10.53493 -9.96979 -9.81258 -9.64423 -9.42523 -9.11502 -8.94559 -8.48861 -6.00129 -3.97562 1.86157 2.40441 2.58414 3.02828 3.35880 3.42875 3.48851 4.06137 4.10630 4.35883 4.50610 4.62680 4.73404 4.82869 4.88982 5.00529 5.15869 5.19144 5.23664 5.30884 5.34955 5.43581 5.45857 5.51197 5.63119 5.74466 5.82284 6.02605 6.03979 6.14014 6.17755 6.41337 6.68136 6.81585 6.99323 7.29428 7.38688 7.51405 7.52950 7.85296 8.08028 8.58769 9.04876 9.63333 11.13413 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.026564 B = 0.002887 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.805716 B = 9697.398240 C =10545.002249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.102 4.102 11 C -0.107 4.107 12 C -0.134 4.134 13 C 0.530 3.470 14 O -0.534 6.534 15 N -0.623 5.623 16 C 0.098 3.902 17 C -0.134 4.134 18 C -0.127 4.127 19 C 0.149 3.851 20 H 0.088 0.912 21 C -0.131 4.131 22 C 0.487 3.513 23 O -0.516 6.516 24 O -0.517 6.517 25 H 0.262 0.738 26 H 0.016 0.984 27 H 0.011 0.989 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.124 0.876 41 H 0.106 0.894 42 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.660 -17.481 2.441 29.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.145 4.145 12 C -0.173 4.173 13 C 0.320 3.680 14 O -0.410 6.410 15 N -0.359 5.359 16 C -0.025 4.025 17 C -0.172 4.172 18 C -0.165 4.165 19 C 0.046 3.954 20 H 0.106 0.894 21 C -0.169 4.169 22 C 0.329 3.671 23 O -0.404 6.404 24 O -0.329 6.329 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.029 0.971 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.142 0.858 41 H 0.124 0.876 42 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 23.468 -16.799 2.232 28.947 hybrid contribution 0.984 0.840 -0.071 1.296 sum 24.452 -15.959 2.161 29.279 Atomic orbital electron populations 1.69922 1.06310 1.26822 1.51503 1.25043 0.94733 0.99228 0.94617 0.86772 0.80425 0.83547 0.78541 1.20321 1.21464 1.18902 1.21185 0.89672 0.94376 1.50489 0.91110 1.19574 0.96901 0.92488 0.96316 1.21472 0.91632 0.99937 1.00930 1.21503 0.97268 0.92775 1.02935 1.21772 0.89672 1.01726 1.04176 1.20876 0.90719 0.81632 0.74778 1.90689 1.70495 1.30607 1.49162 1.48702 1.06259 1.06523 1.74395 1.22383 0.97475 0.81513 1.01128 1.22800 0.94006 0.98836 1.01516 1.22737 0.98343 0.92623 1.02755 1.21288 0.80623 0.96120 0.97417 0.89444 1.21829 0.86852 1.06682 1.01558 1.23323 0.90545 0.72816 0.80416 1.90718 1.77651 1.43469 1.28601 1.84553 1.23580 1.78055 1.46669 0.92821 0.96615 0.97066 0.92863 0.92835 0.91757 0.91764 0.88925 0.88977 0.91007 0.89804 0.89568 0.90256 0.89239 0.90759 0.85785 0.87617 0.73123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.41 13.96 55.43 0.77 -27.64 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.38 27.47 -169.99 -4.67 17.71 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 6 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 7 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16 8 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 9 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 10 C -0.10 -1.99 5.15 -26.73 -0.14 -2.13 16 11 C -0.11 -1.77 4.50 -26.73 -0.12 -1.89 16 12 C -0.13 -1.67 4.63 -27.89 -0.13 -1.80 16 13 C 0.53 7.01 7.66 -10.99 -0.08 6.93 16 14 O -0.53 -9.02 14.77 5.56 0.08 -8.93 16 15 N -0.62 -6.25 3.06 -163.02 -0.50 -6.75 16 16 C 0.10 0.65 6.74 -2.53 -0.02 0.64 16 17 C -0.13 -0.73 7.08 -24.58 -0.17 -0.90 16 18 C -0.13 -0.86 5.59 -24.90 -0.14 -1.00 16 19 C 0.15 1.42 2.55 -66.95 -0.17 1.25 16 20 H 0.09 1.01 7.83 -51.93 -0.41 0.61 16 21 C -0.13 -1.21 5.29 -27.88 -0.15 -1.36 16 22 C 0.49 4.55 8.06 36.00 0.29 4.84 16 23 O -0.52 -5.95 15.81 -18.75 -0.30 -6.25 16 24 O -0.52 -3.78 13.42 -39.25 -0.53 -4.31 16 25 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 26 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 27 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16 31 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 32 H 0.09 1.01 7.95 -51.93 -0.41 0.60 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.50 7.47 -51.93 -0.39 0.11 16 36 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.66 7.85 -51.93 -0.41 0.25 16 39 H 0.07 0.43 7.75 -51.93 -0.40 0.03 16 40 H 0.12 1.42 6.54 -51.93 -0.34 1.08 16 41 H 0.11 0.78 8.01 -51.93 -0.42 0.37 16 42 H 0.41 1.22 9.10 45.56 0.41 1.64 16 LS Contribution 344.29 15.07 5.19 5.19 Total: -1.00 -35.85 344.29 -7.41 -43.26 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -6.09 Total: -2.78 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -1.37 Total: -9.51 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.27 Total: -34.39 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.74 Total: -19.49 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.67 Total: 17.71 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.85 -7.41 -43.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608179993.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.322 kcal (2) G-P(sol) polarization free energy of solvation -35.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds