Wall clock time and date at job start Tue Mar 31 2020 05:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99668 * 2 1 4 4 H 1.48497 * 109.47367 * 269.99644 * 3 2 1 5 5 H 1.48503 * 109.47265 * 29.99998 * 3 2 1 6 6 H 1.48500 * 109.47190 * 150.00229 * 3 2 1 7 7 C 1.37873 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99807 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99857 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46893 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47160 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47223 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47289 * 179.97438 * 12 11 10 14 14 O 1.21288 * 120.00015 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00580 * 180.02562 * 13 12 11 16 16 C 1.47434 * 125.64389 * 4.87548 * 15 13 12 17 17 C 1.54907 * 104.82859 * 204.16333 * 16 15 13 18 18 C 1.55155 * 101.58428 * 322.98997 * 17 16 15 19 19 C 1.47018 * 125.65455 * 184.91404 * 15 13 12 20 20 H 1.09000 * 109.88389 * 59.33270 * 19 15 13 21 21 C 1.53006 * 109.87988 * 298.32186 * 19 15 13 22 22 C 1.50704 * 109.46850 * 174.24689 * 21 19 15 23 23 O 1.20817 * 120.00136 * 354.16762 * 22 21 19 24 24 O 1.34230 * 119.99756 * 174.43961 * 22 21 19 25 25 H 0.97005 * 120.00096 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.46961 * 60.00495 * 9 7 2 27 27 H 1.08999 * 109.47650 * 300.00317 * 9 7 2 28 28 H 1.08995 * 109.47031 * 60.00393 * 10 9 7 29 29 H 1.08999 * 109.47112 * 300.00501 * 10 9 7 30 30 H 1.09003 * 109.46672 * 59.99603 * 11 10 9 31 31 H 1.09008 * 109.46802 * 300.00278 * 11 10 9 32 32 H 1.09009 * 109.46861 * 60.00315 * 12 11 10 33 33 H 1.08999 * 109.47178 * 300.00387 * 12 11 10 34 34 H 1.09003 * 110.36369 * 322.99783 * 16 15 13 35 35 H 1.08991 * 110.36744 * 85.32119 * 16 15 13 36 36 H 1.08998 * 111.00406 * 81.06329 * 17 16 15 37 37 H 1.09005 * 111.00178 * 204.87414 * 17 16 15 38 38 H 1.09006 * 110.71697 * 277.14293 * 18 17 16 39 39 H 1.08997 * 110.72142 * 153.86747 * 18 17 16 40 40 H 1.08997 * 109.46910 * 54.24906 * 21 19 15 41 41 H 1.09000 * 109.47093 * 294.24752 * 21 19 15 42 42 H 0.96695 * 116.99569 * 179.72326 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0000 10 6 4.0216 -2.6365 0.0001 11 6 5.5516 -2.6365 0.0001 12 6 6.0616 -4.0789 0.0009 13 6 7.5686 -4.0789 0.0003 14 8 8.1750 -3.0285 -0.0002 15 7 8.2426 -5.2460 0.0003 16 6 7.6384 -6.5871 -0.1010 17 6 8.6733 -7.5383 0.5499 18 6 10.0123 -6.9045 0.0887 19 6 9.7018 -5.3929 0.1021 20 1 10.0553 -4.9478 1.0322 21 6 10.3777 -4.7123 -1.0900 22 6 11.8730 -4.7447 -0.9054 23 8 12.3456 -5.1634 0.1247 24 8 12.6797 -4.3033 -1.8833 25 1 -0.4850 0.8401 -0.0004 26 1 3.8752 -0.6796 0.8895 27 1 3.8746 -0.6806 -0.8904 28 1 3.6580 -3.1505 -0.8897 29 1 3.6585 -3.1501 0.8903 30 1 5.9148 -2.1225 0.8901 31 1 5.9149 -2.1226 -0.8899 32 1 5.6983 -4.5932 -0.8889 33 1 5.6982 -4.5923 0.8911 34 1 6.6959 -6.6207 0.4456 35 1 7.4817 -6.8546 -1.1459 36 1 8.5880 -7.5239 1.6364 37 1 8.5675 -8.5528 0.1652 38 1 10.2698 -7.2364 -0.9171 39 1 10.8124 -7.1401 0.7904 40 1 10.0421 -3.6774 -1.1557 41 1 10.1133 -5.2390 -2.0069 42 1 13.6315 -4.3401 -1.7172 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608179994.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:03 Heat of formation + Delta-G solvation = -151.604397 kcal Electronic energy + Delta-G solvation = -22052.750407 eV Core-core repulsion = 18610.790475 eV Total energy + Delta-G solvation = -3441.959932 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.99561 -40.00944 -37.81247 -36.44373 -35.04900 -32.86945 -32.25018 -31.82074 -29.96519 -27.28229 -26.08639 -23.71749 -22.15096 -22.04193 -20.78244 -20.02289 -19.06971 -18.34436 -17.50456 -16.98208 -16.54989 -16.25615 -15.98714 -15.61389 -14.92858 -14.24120 -14.13840 -14.09325 -13.73588 -13.38223 -13.12908 -12.95751 -12.64292 -12.47475 -12.14997 -12.11263 -11.90128 -11.73369 -11.55272 -11.30663 -11.20360 -11.09738 -10.94057 -10.72724 -10.53642 -9.96888 -9.81377 -9.64355 -9.42529 -9.11511 -8.94600 -8.48860 -6.00114 -3.97573 1.86197 2.40458 2.58375 3.02855 3.35791 3.42871 3.48968 4.06049 4.10482 4.35947 4.50620 4.62569 4.73361 4.82859 4.89037 5.00481 5.15909 5.19137 5.23574 5.30817 5.34932 5.43507 5.45721 5.51036 5.63026 5.74427 5.82251 6.02604 6.03892 6.14046 6.17743 6.41320 6.68098 6.81584 6.99310 7.29404 7.38659 7.51429 7.52971 7.85265 8.08050 8.58745 9.04872 9.63342 11.13392 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.026544 B = 0.002887 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.583479 B = 9696.134429 C =10543.252469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.102 4.102 11 C -0.107 4.107 12 C -0.134 4.134 13 C 0.529 3.471 14 O -0.534 6.534 15 N -0.623 5.623 16 C 0.098 3.902 17 C -0.134 4.134 18 C -0.127 4.127 19 C 0.149 3.851 20 H 0.088 0.912 21 C -0.131 4.131 22 C 0.487 3.513 23 O -0.516 6.516 24 O -0.517 6.517 25 H 0.262 0.738 26 H 0.016 0.984 27 H 0.011 0.989 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.124 0.876 41 H 0.106 0.894 42 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.655 -17.493 -2.393 29.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.145 4.145 12 C -0.173 4.173 13 C 0.320 3.680 14 O -0.410 6.410 15 N -0.359 5.359 16 C -0.025 4.025 17 C -0.172 4.172 18 C -0.165 4.165 19 C 0.045 3.955 20 H 0.106 0.894 21 C -0.169 4.169 22 C 0.329 3.671 23 O -0.404 6.404 24 O -0.329 6.329 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.029 0.971 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.142 0.858 41 H 0.124 0.876 42 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 23.463 -16.810 -2.177 28.946 hybrid contribution 0.983 0.842 0.020 1.294 sum 24.446 -15.968 -2.157 29.278 Atomic orbital electron populations 1.69923 1.06310 1.26824 1.51503 1.25042 0.94731 0.99227 0.94616 0.86773 0.80437 0.83551 0.78534 1.20318 1.21464 1.18899 1.21184 0.89671 0.94377 1.50489 0.91108 1.19575 0.96900 0.92487 0.96314 1.21472 0.91631 0.99937 1.00930 1.21504 0.97268 0.92776 1.02935 1.21773 0.89668 1.01725 1.04175 1.20877 0.90720 0.81635 0.74780 1.90691 1.70501 1.30600 1.49169 1.48703 1.06231 1.06512 1.74429 1.22385 0.97461 0.81512 1.01142 1.22803 0.94012 0.98852 1.01509 1.22740 0.98366 0.92625 1.02726 1.21286 0.80635 0.96136 0.97396 0.89436 1.21829 0.86858 1.06682 1.01541 1.23321 0.90564 0.72770 0.80446 1.90714 1.77521 1.43650 1.28540 1.84553 1.23653 1.78231 1.46428 0.92820 0.96618 0.97065 0.92856 0.92843 0.91763 0.91759 0.88986 0.88916 0.89804 0.91001 0.90265 0.89565 0.90753 0.89224 0.85786 0.87628 0.73123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.41 13.96 55.43 0.77 -27.64 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.38 27.47 -169.99 -4.67 17.71 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 7 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 10 C -0.10 -1.99 5.15 -26.73 -0.14 -2.13 16 11 C -0.11 -1.77 4.50 -26.73 -0.12 -1.89 16 12 C -0.13 -1.67 4.63 -27.89 -0.13 -1.80 16 13 C 0.53 7.01 7.66 -10.99 -0.08 6.93 16 14 O -0.53 -9.02 14.77 5.55 0.08 -8.94 16 15 N -0.62 -6.25 3.06 -163.01 -0.50 -6.75 16 16 C 0.10 0.65 6.74 -2.52 -0.02 0.64 16 17 C -0.13 -0.73 7.08 -24.58 -0.17 -0.90 16 18 C -0.13 -0.86 5.59 -24.90 -0.14 -1.00 16 19 C 0.15 1.42 2.54 -66.95 -0.17 1.25 16 20 H 0.09 1.01 7.82 -51.93 -0.41 0.61 16 21 C -0.13 -1.21 5.30 -27.88 -0.15 -1.35 16 22 C 0.49 4.55 8.05 36.01 0.29 4.84 16 23 O -0.52 -5.96 15.82 -18.74 -0.30 -6.25 16 24 O -0.52 -3.78 13.42 -39.26 -0.53 -4.31 16 25 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 26 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 27 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 31 H 0.06 1.12 8.10 -51.92 -0.42 0.70 16 32 H 0.09 0.98 8.14 -51.92 -0.42 0.56 16 33 H 0.09 1.01 7.95 -51.93 -0.41 0.60 16 34 H 0.08 0.50 7.47 -51.93 -0.39 0.11 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.43 7.75 -51.93 -0.40 0.03 16 39 H 0.09 0.66 7.86 -51.93 -0.41 0.25 16 40 H 0.12 1.42 6.54 -51.93 -0.34 1.08 16 41 H 0.11 0.78 8.00 -51.93 -0.42 0.37 16 42 H 0.41 1.22 9.10 45.56 0.41 1.64 16 LS Contribution 344.33 15.07 5.19 5.19 Total: -1.00 -35.86 344.33 -7.41 -43.27 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -6.09 Total: -2.78 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -1.37 Total: -9.50 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.27 Total: -34.39 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.74 Total: -19.50 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.67 Total: 17.71 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.86 -7.41 -43.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608179994.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.331 kcal (2) G-P(sol) polarization free energy of solvation -35.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds