Wall clock time and date at job start Tue Mar 31 2020 05:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99903 * 2 1 4 4 H 1.48501 * 109.47071 * 90.00542 * 3 2 1 5 5 H 1.48502 * 109.46715 * 210.00220 * 3 2 1 6 6 H 1.48495 * 109.47155 * 330.00183 * 3 2 1 7 7 C 1.37870 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00347 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99966 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46984 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46849 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.46967 * 180.02562 * 11 10 9 13 13 O 1.21276 * 119.99759 * 0.02562 * 12 11 10 14 14 N 1.34781 * 119.99749 * 179.97438 * 12 11 10 15 15 C 1.47604 * 118.64390 * 356.05123 * 14 12 11 16 16 C 1.54295 * 111.94270 * 137.77659 * 15 14 12 17 17 C 1.50884 * 110.23267 * 319.69784 * 16 15 14 18 18 C 1.52569 * 109.36006 * 91.80095 * 17 16 15 19 19 C 1.47092 * 114.32369 * 274.98489 * 18 17 16 20 20 C 1.44575 * 118.63929 * 176.31503 * 14 12 11 21 21 H 1.09000 * 109.44624 * 150.67214 * 20 14 12 22 22 C 1.50698 * 109.45124 * 30.71823 * 20 14 12 23 23 O 1.20822 * 120.00223 * 223.00237 * 22 20 14 24 24 O 1.34229 * 119.99794 * 43.01393 * 22 20 14 25 25 H 0.97001 * 119.99999 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47201 * 299.99587 * 9 7 2 27 27 H 1.09003 * 109.46703 * 59.99979 * 9 7 2 28 28 H 1.08997 * 109.47767 * 300.00015 * 10 9 7 29 29 H 1.09003 * 109.46949 * 60.00703 * 10 9 7 30 30 H 1.08993 * 109.47483 * 300.00252 * 11 10 9 31 31 H 1.09003 * 109.46556 * 60.00726 * 11 10 9 32 32 H 1.08999 * 108.94608 * 258.57465 * 15 14 12 33 33 H 1.09001 * 108.94616 * 17.20155 * 15 14 12 34 34 H 1.09005 * 109.36597 * 199.42280 * 16 15 14 35 35 H 1.08994 * 109.12357 * 79.81866 * 16 15 14 36 36 H 1.08996 * 109.49378 * 331.83009 * 17 16 15 37 37 H 1.09006 * 109.48777 * 211.76774 * 17 16 15 38 38 H 1.08997 * 108.50904 * 153.73178 * 18 17 16 39 39 H 1.08996 * 108.51170 * 36.24116 * 18 17 16 40 40 H 1.08990 * 109.32959 * 302.54132 * 19 18 17 41 41 H 1.08999 * 109.32593 * 183.06107 * 19 18 17 42 42 H 0.96697 * 117.00032 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 1.4001 5 1 3.5467 1.4401 -0.7001 6 1 1.4466 2.6526 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6366 -0.0010 11 6 5.5515 -2.6366 -0.0022 12 6 6.0538 -4.0575 -0.0027 13 8 5.2656 -4.9792 -0.0026 14 7 7.3789 -4.3038 -0.0044 15 6 8.3106 -3.1625 -0.0948 16 6 9.5097 -3.3198 0.8634 17 6 9.0506 -3.8833 2.1856 18 6 9.1580 -5.4049 2.1515 19 6 7.9924 -6.0814 1.5623 20 6 7.8289 -5.6753 0.0767 21 1 8.7868 -5.7737 -0.4340 22 6 6.8149 -6.5759 -0.5804 23 8 6.5043 -7.6194 -0.0566 24 8 6.2568 -6.2187 -1.7477 25 1 -0.4850 0.8400 0.0004 26 1 3.8745 -0.6801 -0.8911 27 1 3.8752 -0.6804 0.8889 28 1 3.6585 -3.1503 0.8892 29 1 3.6578 -3.1506 -0.8908 30 1 5.9141 -2.1231 -0.8926 31 1 5.9154 -2.1225 0.8874 32 1 8.6784 -3.0861 -1.1180 33 1 7.7744 -2.2472 0.1561 34 1 9.9722 -2.3463 1.0264 35 1 10.2381 -3.9957 0.4158 36 1 8.0145 -3.5957 2.3635 37 1 9.6793 -3.4922 2.9856 38 1 9.2883 -5.7655 3.1718 39 1 10.0432 -5.6765 1.5765 40 1 7.0953 -5.8006 2.1139 41 1 8.1303 -7.1606 1.6282 42 1 5.6114 -6.8286 -2.1305 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608180347.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:35 Heat of formation + Delta-G solvation = -140.869434 kcal Electronic energy + Delta-G solvation = -23500.479710 eV Core-core repulsion = 20058.985281 eV Total energy + Delta-G solvation = -3441.494429 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.26653 -39.20750 -37.83773 -35.89881 -34.48122 -34.14129 -33.03519 -32.00073 -28.97933 -27.23624 -26.30477 -23.85240 -22.69147 -21.65786 -20.80008 -20.01343 -18.92292 -17.85645 -17.41657 -16.81687 -16.56891 -15.96058 -15.47811 -15.35905 -14.74876 -14.59673 -14.36066 -13.94945 -13.87436 -13.32291 -13.14206 -12.89198 -12.60095 -12.51914 -12.18365 -11.90099 -11.66648 -11.41911 -11.27346 -11.07467 -11.04643 -10.89125 -10.85683 -10.79888 -10.40060 -10.01824 -9.83991 -9.71407 -9.47181 -9.14372 -8.87333 -8.51420 -6.00899 -3.98816 2.23144 2.68902 2.88467 3.12772 3.30789 3.37955 3.40413 4.27699 4.38396 4.46517 4.51647 4.54208 4.72396 4.84182 4.96501 5.15699 5.24692 5.30859 5.32369 5.36494 5.45147 5.52984 5.56773 5.59377 5.77552 5.79842 5.85128 5.93469 6.04852 6.06425 6.33429 6.53705 6.66382 6.73041 6.90205 7.15211 7.36672 7.44214 7.81975 8.05892 8.18630 8.58846 9.05828 9.60976 11.12860 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021152 B = 0.004300 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.433610 B = 6509.686829 C = 7326.665922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.266 1.266 6 H -0.288 1.288 7 C -0.519 4.519 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.088 4.088 11 C -0.136 4.136 12 C 0.514 3.486 13 O -0.513 6.513 14 N -0.609 5.609 15 C 0.106 3.894 16 C -0.134 4.134 17 C -0.121 4.121 18 C -0.117 4.117 19 C -0.118 4.118 20 C 0.159 3.841 21 H 0.113 0.887 22 C 0.499 3.501 23 O -0.524 6.524 24 O -0.509 6.509 25 H 0.262 0.738 26 H 0.015 0.985 27 H 0.010 0.990 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.691 -7.840 0.502 25.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.190 1.190 6 H -0.214 1.214 7 C -0.557 4.557 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.126 4.126 11 C -0.176 4.176 12 C 0.305 3.695 13 O -0.389 6.389 14 N -0.345 5.345 15 C -0.016 4.016 16 C -0.172 4.172 17 C -0.158 4.158 18 C -0.154 4.154 19 C -0.157 4.157 20 C 0.054 3.946 21 H 0.130 0.870 22 C 0.342 3.658 23 O -0.414 6.414 24 O -0.320 6.320 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.029 0.971 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 24.321 -8.229 0.801 25.688 hybrid contribution 0.008 0.565 -0.260 0.622 sum 24.328 -7.664 0.541 25.513 Atomic orbital electron populations 1.69926 1.06320 1.26794 1.51314 1.25050 0.94733 0.99138 0.94697 0.86762 0.80317 0.83672 0.78401 1.20353 1.19045 1.21441 1.21153 0.89507 0.94537 1.50465 0.90974 1.19599 0.97358 0.92075 0.96065 1.21287 0.89072 0.99640 1.02568 1.21890 1.00738 0.91355 1.03614 1.21344 0.81008 0.93043 0.74135 1.90621 1.53887 1.45786 1.48605 1.47879 1.06606 1.04951 1.75064 1.22167 0.91108 0.88515 0.99785 1.21879 0.97200 1.02368 0.95720 1.21116 1.02491 0.95182 0.97045 1.20456 0.97964 0.95535 1.01484 1.21109 1.00100 1.01796 0.92676 1.20728 0.95875 0.81364 0.96656 0.86964 1.22753 0.79737 0.84672 0.78639 1.90676 1.61075 1.25977 1.63632 1.84470 1.56237 1.53858 1.37425 0.92788 0.96645 0.97142 0.92158 0.91988 0.89128 0.89203 0.91263 0.88842 0.90178 0.91456 0.91214 0.91509 0.91566 0.92072 0.90760 0.89434 0.73434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.33 13.96 55.43 0.77 -27.56 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 8 H 0.07 2.29 7.99 -52.48 -0.42 1.87 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 10 C -0.09 -1.79 4.44 -26.73 -0.12 -1.91 16 11 C -0.14 -2.04 4.00 -27.88 -0.11 -2.15 16 12 C 0.51 7.77 6.98 -10.98 -0.08 7.70 16 13 O -0.51 -9.71 12.29 -20.15 -0.25 -9.95 16 14 N -0.61 -6.80 2.15 -166.02 -0.36 -7.16 16 15 C 0.11 0.81 6.00 -2.76 -0.02 0.80 16 16 C -0.13 -0.78 5.71 -27.12 -0.15 -0.93 16 17 C -0.12 -0.86 5.51 -28.01 -0.15 -1.02 16 18 C -0.12 -0.87 5.15 -29.79 -0.15 -1.02 16 19 C -0.12 -1.23 4.71 -28.58 -0.13 -1.36 16 20 C 0.16 1.76 2.51 -69.12 -0.17 1.58 16 21 H 0.11 0.92 8.07 -51.93 -0.42 0.50 16 22 C 0.50 7.18 5.42 36.00 0.20 7.38 16 23 O -0.52 -8.97 16.52 -20.66 -0.34 -9.31 16 24 O -0.51 -6.94 11.37 -47.07 -0.54 -7.48 16 25 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 26 H 0.02 0.35 7.20 -51.93 -0.37 -0.02 16 27 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 28 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 29 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 30 H 0.09 1.20 7.88 -51.93 -0.41 0.79 16 31 H 0.09 1.17 7.59 -51.93 -0.39 0.78 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.70 5.79 -51.93 -0.30 0.40 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.34 7.32 -51.93 -0.38 -0.04 16 36 H 0.07 0.63 7.49 -51.93 -0.39 0.25 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.37 7.36 -51.93 -0.38 -0.01 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.09 0.93 7.50 -51.93 -0.39 0.54 16 42 H 0.41 4.34 9.10 45.56 0.41 4.76 16 LS Contribution 330.18 15.07 4.98 4.98 Total: -1.00 -36.07 330.18 -7.80 -43.87 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -5.96 Total: 0.70 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -1.44 Total: -4.98 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.42 Total: -34.72 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -1.12 Total: -26.75 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -36.07 -7.80 -43.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180347.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.000 kcal (2) G-P(sol) polarization free energy of solvation -36.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds