Wall clock time and date at job start Tue Mar 31 2020 05:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00089 * 2 1 4 4 H 1.48493 * 109.47114 * 270.00241 * 3 2 1 5 5 H 1.48500 * 109.46767 * 30.00130 * 3 2 1 6 6 H 1.48497 * 109.47130 * 149.99808 * 3 2 1 7 7 C 1.37877 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99922 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00225 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47122 * 179.97438 * 10 9 7 12 12 C 1.50708 * 109.47084 * 179.97438 * 11 10 9 13 13 O 1.21280 * 119.99640 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99905 * 179.97438 * 12 11 10 15 15 C 1.46499 * 120.00013 * 179.97438 * 14 12 11 16 16 H 1.09007 * 110.01849 * 326.39627 * 15 14 12 17 17 C 1.53874 * 110.07109 * 87.80895 * 15 14 12 18 18 C 1.54272 * 106.59660 * 119.30770 * 17 15 14 19 19 C 1.54883 * 104.19402 * 23.61205 * 18 17 15 20 20 H 1.08996 * 110.91769 * 80.44756 * 19 18 17 21 21 C 1.53006 * 110.75425 * 203.74446 * 19 18 17 22 22 C 1.50699 * 109.46866 * 288.32762 * 21 19 18 23 23 O 1.20828 * 120.00000 * 359.97438 * 22 21 19 24 24 O 1.34231 * 120.00150 * 180.02562 * 22 21 19 25 25 C 1.54266 * 110.03498 * 205.00114 * 15 14 12 26 26 H 0.97005 * 119.99985 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47083 * 59.99687 * 9 7 2 28 28 H 1.09001 * 109.46679 * 299.99910 * 9 7 2 29 29 H 1.09003 * 109.47502 * 59.99974 * 10 9 7 30 30 H 1.09001 * 109.47322 * 299.99682 * 10 9 7 31 31 H 1.08995 * 109.47071 * 59.99962 * 11 10 9 32 32 H 1.08992 * 109.47112 * 299.99520 * 11 10 9 33 33 H 0.97001 * 120.00250 * 0.02562 * 14 12 11 34 34 H 1.09000 * 110.03585 * 238.59488 * 17 15 14 35 35 H 1.09001 * 110.03240 * 359.97438 * 17 15 14 36 36 H 1.08994 * 110.48503 * 264.93134 * 18 17 15 37 37 H 1.08996 * 110.48485 * 142.29089 * 18 17 15 38 38 H 1.08993 * 109.46955 * 48.32981 * 21 19 18 39 39 H 1.09000 * 109.47050 * 168.32810 * 21 19 18 40 40 H 0.96691 * 116.99938 * 180.02562 * 24 22 21 41 41 H 1.09004 * 110.48170 * 98.37802 * 25 15 14 42 42 H 1.09000 * 110.59668 * 335.79319 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4595 -6.1326 0.0005 13 8 3.6519 -5.9109 0.0001 14 7 2.0103 -7.4032 0.0015 15 6 2.9622 -8.5168 0.0003 16 1 3.8523 -8.2462 -0.5679 17 6 3.3495 -8.8819 1.4440 18 6 2.9155 -10.3465 1.6597 19 6 2.8700 -10.9434 0.2312 20 1 3.8690 -11.2174 -0.1080 21 6 1.9314 -12.1506 0.1776 22 6 2.5635 -13.3109 0.9023 23 8 3.6530 -13.1853 1.4093 24 8 1.9165 -14.4841 0.9839 25 6 2.3064 -9.7721 -0.6110 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5566 0.8903 29 1 2.8719 -3.6043 0.8905 30 1 2.8719 -3.6043 -0.8895 31 1 0.8532 -5.0451 -0.8885 32 1 0.8539 -5.0446 0.8914 33 1 1.0566 -7.5805 0.0022 34 1 4.4274 -8.7886 1.5765 35 1 2.8296 -8.2303 2.1463 36 1 1.9293 -10.3880 2.1220 37 1 3.6469 -10.8751 2.2709 38 1 0.9849 -11.8963 0.6545 39 1 1.7522 -12.4255 -0.8618 40 1 2.3617 -15.1989 1.4591 41 1 2.5934 -9.8815 -1.6569 42 1 1.2216 -9.7222 -0.5172 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608180577.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:53 Heat of formation + Delta-G solvation = -167.859917 kcal Electronic energy + Delta-G solvation = -21507.120034 eV Core-core repulsion = 18064.455210 eV Total energy + Delta-G solvation = -3442.664824 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.82494 -39.80374 -38.11499 -36.50871 -34.25235 -33.98453 -32.06226 -31.28164 -28.89307 -27.81593 -26.17230 -23.74870 -22.29761 -21.08019 -20.60000 -19.93750 -19.59449 -18.45661 -17.23021 -16.88380 -16.38074 -16.23870 -15.91177 -15.59405 -15.09630 -14.42298 -14.19535 -13.89003 -13.57274 -13.30221 -13.24090 -12.84661 -12.25753 -12.13542 -12.02908 -11.88103 -11.68808 -11.49752 -11.31887 -11.23195 -11.06056 -10.89339 -10.78588 -10.70444 -10.57657 -10.51398 -9.65181 -9.63582 -9.23472 -8.98955 -8.95965 -8.30217 -5.95955 -3.97130 1.78431 2.58107 2.96597 3.33887 3.36137 3.41833 3.47054 4.06032 4.20951 4.46895 4.51206 4.66739 4.84596 4.94411 5.03926 5.12792 5.21964 5.24718 5.32156 5.40089 5.40917 5.50422 5.55299 5.74378 5.75226 5.85471 5.96254 6.04868 6.07263 6.09928 6.30603 6.61767 6.75915 6.96510 7.19294 7.45595 7.65261 7.73501 7.86185 8.04998 8.48868 8.51734 9.09998 9.66675 11.15524 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.060448 B = 0.002188 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.097143 B =12792.451297 C =12978.278283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.139 4.139 12 C 0.512 3.488 13 O -0.537 6.537 14 N -0.735 5.735 15 C 0.141 3.859 16 H 0.091 0.909 17 C -0.135 4.135 18 C -0.119 4.119 19 C -0.083 4.083 20 H 0.091 0.909 21 C -0.106 4.106 22 C 0.476 3.524 23 O -0.511 6.511 24 O -0.521 6.521 25 C -0.124 4.124 26 H 0.259 0.741 27 H 0.015 0.985 28 H 0.015 0.985 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.398 0.602 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.410 0.590 41 H 0.076 0.924 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.033 -29.504 0.380 29.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.179 4.179 12 C 0.300 3.700 13 O -0.413 6.413 14 N -0.388 5.388 15 C 0.036 3.964 16 H 0.109 0.891 17 C -0.174 4.174 18 C -0.157 4.157 19 C -0.101 4.101 20 H 0.109 0.891 21 C -0.144 4.144 22 C 0.319 3.681 23 O -0.398 6.398 24 O -0.333 6.333 25 C -0.162 4.162 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.232 0.768 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.268 0.732 41 H 0.095 0.905 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.872 -28.839 0.307 28.854 hybrid contribution 0.175 0.294 0.347 0.487 sum 1.047 -28.546 0.654 28.572 Atomic orbital electron populations 1.69963 1.06022 1.26500 1.51279 1.25026 0.94871 0.99256 0.95436 0.86588 0.79900 0.83419 0.78083 1.20695 1.21281 1.19845 1.21279 0.93195 0.91027 1.50032 0.92586 1.19132 0.93983 0.91498 0.97092 1.21440 0.98617 0.91588 1.01657 1.21846 0.98167 0.94200 1.03661 1.21275 0.90388 0.83852 0.74494 1.90674 1.17363 1.84718 1.48547 1.46297 1.09699 1.05656 1.77178 1.21508 0.93222 0.85533 0.96163 0.89119 1.22586 1.02031 0.95969 0.96795 1.22463 1.01757 0.95492 0.95940 1.21973 0.99110 0.92164 0.96899 0.89097 1.21431 1.00612 0.90470 1.01873 1.23594 0.83611 0.83396 0.77524 1.90742 1.21408 1.83239 1.44441 1.84542 1.52971 1.23165 1.72651 1.22678 1.00744 0.93173 0.99568 0.93098 0.96634 0.96621 0.92748 0.92739 0.89436 0.89444 0.76788 0.91119 0.91034 0.91736 0.90695 0.87381 0.87418 0.73154 0.90519 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 10 C -0.09 -2.07 4.44 -26.73 -0.12 -2.19 16 11 C -0.14 -2.28 5.70 -27.88 -0.16 -2.44 16 12 C 0.51 8.11 7.83 -10.98 -0.09 8.02 16 13 O -0.54 -10.76 15.64 5.56 0.09 -10.67 16 14 N -0.74 -8.21 4.99 -52.72 -0.26 -8.48 16 15 C 0.14 1.43 3.24 -66.81 -0.22 1.22 16 16 H 0.09 1.12 7.57 -51.92 -0.39 0.73 16 17 C -0.13 -1.38 6.59 -25.61 -0.17 -1.55 16 18 C -0.12 -0.97 5.76 -25.07 -0.14 -1.11 16 19 C -0.08 -0.55 2.45 -88.63 -0.22 -0.77 16 20 H 0.09 0.71 7.88 -51.93 -0.41 0.30 16 21 C -0.11 -0.51 5.31 -27.88 -0.15 -0.66 16 22 C 0.48 3.27 8.16 36.01 0.29 3.57 16 23 O -0.51 -5.22 15.60 -18.75 -0.29 -5.52 16 24 O -0.52 -2.61 13.42 -39.26 -0.53 -3.13 16 25 C -0.12 -0.81 5.97 -25.07 -0.15 -0.96 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 30 H 0.05 1.24 8.10 -51.93 -0.42 0.81 16 31 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.40 3.27 8.36 -40.82 -0.34 2.92 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.80 7.92 -51.93 -0.41 0.39 16 36 H 0.06 0.46 7.93 -51.93 -0.41 0.05 16 37 H 0.07 0.71 7.39 -51.93 -0.38 0.32 16 38 H 0.11 0.38 7.99 -51.93 -0.41 -0.04 16 39 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.41 0.54 9.10 45.56 0.41 0.95 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.39 7.65 -51.93 -0.40 -0.01 16 LS Contribution 349.82 15.07 5.27 5.27 Total: -1.00 -36.24 349.82 -7.76 -44.00 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -6.09 Total: -1.77 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -1.66 Total: -10.38 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.47 Total: -34.95 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.73 Total: -19.32 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.24 -7.76 -44.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180577.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.860 kcal (2) G-P(sol) polarization free energy of solvation -36.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds