Wall clock time and date at job start Tue Mar 31 2020 05:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99845 * 2 1 4 4 H 1.48501 * 109.46767 * 269.99637 * 3 2 1 5 5 H 1.48497 * 109.47299 * 29.99616 * 3 2 1 6 6 H 1.48501 * 109.47144 * 150.00189 * 3 2 1 7 7 C 1.37875 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99820 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00345 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47385 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47600 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99906 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00535 * 179.97438 * 11 10 9 14 14 C 1.46506 * 120.00377 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.47068 * 325.00617 * 14 13 11 16 16 C 1.50698 * 109.47006 * 84.99953 * 14 13 11 17 17 O 1.20825 * 119.99963 * 0.02562 * 16 14 13 18 18 O 1.34225 * 119.99990 * 180.02562 * 16 14 13 19 19 C 1.52997 * 109.47277 * 205.00246 * 14 13 11 20 20 C 1.52996 * 109.46975 * 179.97438 * 19 14 13 21 21 C 1.53000 * 109.47328 * 180.02562 * 20 19 14 22 22 C 1.52997 * 109.47060 * 60.00126 * 21 20 19 23 23 C 1.53006 * 109.47127 * 300.00449 * 22 21 20 24 24 C 1.52997 * 109.47164 * 59.99836 * 23 22 21 25 25 H 0.97000 * 119.99825 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47364 * 59.99541 * 9 7 2 27 27 H 1.09001 * 109.46822 * 299.99771 * 9 7 2 28 28 H 1.09007 * 109.47184 * 59.99715 * 10 9 7 29 29 H 1.09001 * 109.47135 * 299.99802 * 10 9 7 30 30 H 0.96997 * 119.99946 * 0.02562 * 13 11 10 31 31 H 0.96708 * 116.99703 * 180.02562 * 18 16 14 32 32 H 1.08992 * 109.47280 * 300.00348 * 19 14 13 33 33 H 1.09004 * 109.47368 * 60.00217 * 20 19 14 34 34 H 1.09001 * 109.47372 * 300.00372 * 20 19 14 35 35 H 1.09002 * 109.47398 * 180.02562 * 21 20 19 36 36 H 1.09001 * 109.47194 * 300.00476 * 21 20 19 37 37 H 1.08998 * 109.47533 * 59.99948 * 22 21 20 38 38 H 1.08996 * 109.47853 * 180.02562 * 22 21 20 39 39 H 1.09001 * 109.47002 * 299.99574 * 23 22 21 40 40 H 1.09000 * 109.47050 * 179.97438 * 23 22 21 41 41 H 1.09002 * 109.47045 * 180.02562 * 24 23 22 42 42 H 1.09001 * 109.47375 * 59.99966 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4919 -4.9671 0.0012 12 8 0.2790 -4.9672 0.0011 13 7 2.1657 -6.1343 0.0008 14 6 1.4332 -7.4031 0.0008 15 1 0.5227 -7.2970 0.5905 16 6 1.0744 -7.7760 -1.4145 17 8 1.3977 -7.0561 -2.3294 18 8 0.3956 -8.9079 -1.6588 19 6 2.3106 -8.4985 0.6100 20 6 1.5454 -9.8234 0.6106 21 6 2.4225 -10.9187 1.2204 22 6 2.7867 -10.5395 2.6572 23 6 3.5519 -9.2146 2.6566 24 6 2.6748 -8.1193 2.0469 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 2.8720 -3.6043 0.8905 29 1 2.8719 -3.6043 -0.8895 30 1 3.1357 -6.1343 0.0004 31 1 0.1885 -9.1049 -2.5827 32 1 3.2211 -8.6046 0.0204 33 1 1.2855 -10.0934 -0.4130 34 1 0.6350 -9.7169 1.2005 35 1 1.8775 -11.8627 1.2204 36 1 3.3331 -11.0253 0.6308 37 1 1.8762 -10.4329 3.2468 38 1 3.4119 -11.3196 3.0916 39 1 4.4625 -9.3211 2.0671 40 1 3.8110 -8.9442 3.6803 41 1 3.2201 -7.1755 2.0461 42 1 1.7642 -8.0127 2.6364 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608181551.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:38 Heat of formation + Delta-G solvation = -163.498977 kcal Electronic energy + Delta-G solvation = -22825.823006 eV Core-core repulsion = 19383.347287 eV Total energy + Delta-G solvation = -3442.475719 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.87242 -39.01026 -38.50184 -36.17957 -34.74310 -33.43736 -31.73557 -30.98973 -30.64116 -27.37773 -25.44796 -23.22185 -22.46902 -21.87082 -20.71556 -20.28339 -19.49484 -18.12647 -17.16201 -16.76599 -16.11634 -15.84699 -15.46740 -15.05597 -14.64877 -14.48036 -14.40519 -14.30115 -13.66333 -13.31874 -12.92614 -12.54979 -12.43628 -12.33720 -12.15974 -12.12145 -11.57847 -11.34821 -11.30109 -11.14755 -10.91454 -10.74347 -10.66310 -10.57935 -10.40153 -10.22492 -9.93739 -9.66983 -9.23372 -9.06739 -8.99092 -8.29860 -5.93866 -3.98163 2.20202 2.69004 3.28107 3.35290 3.41037 3.43576 3.51650 4.24513 4.44423 4.49085 4.55338 4.80246 4.90139 4.96343 5.10294 5.20502 5.26175 5.31445 5.32555 5.41101 5.45807 5.56277 5.69941 5.82354 5.86899 5.87111 5.92387 6.03126 6.16608 6.21211 6.23064 6.26876 6.44804 6.49189 6.89829 7.74685 7.77553 7.87395 7.88544 8.09312 8.40190 8.69918 9.10086 9.65182 11.17151 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.025402 B = 0.003509 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.021979 B = 7976.617370 C = 8687.521547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.128 4.128 11 C 0.518 3.482 12 O -0.530 6.530 13 N -0.723 5.723 14 C 0.161 3.839 15 H 0.124 0.876 16 C 0.464 3.536 17 O -0.500 6.500 18 O -0.513 6.513 19 C -0.086 4.086 20 C -0.124 4.124 21 C -0.117 4.117 22 C -0.122 4.122 23 C -0.118 4.118 24 C -0.114 4.114 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.024 0.976 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.404 0.596 31 H 0.403 0.597 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.942 -24.570 3.243 25.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.168 4.168 11 C 0.307 3.693 12 O -0.405 6.405 13 N -0.377 5.377 14 C 0.053 3.947 15 H 0.142 0.858 16 C 0.303 3.697 17 O -0.386 6.386 18 O -0.325 6.325 19 C -0.105 4.105 20 C -0.162 4.162 21 C -0.154 4.154 22 C -0.160 4.160 23 C -0.156 4.156 24 C -0.151 4.151 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.239 0.761 31 H 0.262 0.738 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.066 -24.111 3.400 25.094 hybrid contribution 0.725 0.833 -0.794 1.361 sum 6.790 -23.278 2.605 24.388 Atomic orbital electron populations 1.70003 1.06058 1.26557 1.50234 1.25028 0.94832 0.99236 0.95323 0.86582 0.79754 0.83489 0.78063 1.20691 1.21237 1.19870 1.21214 0.92940 0.90975 1.51335 0.92570 1.18905 0.93178 0.89343 0.98645 1.21867 1.00781 0.91422 1.02684 1.21678 0.88684 0.85540 0.73380 1.90672 1.14512 1.87444 1.47842 1.46021 1.10129 1.03990 1.77598 1.20458 0.99052 0.85922 0.89288 0.85848 1.24267 0.74256 0.77794 0.93375 1.90744 1.50633 1.50553 1.46646 1.84619 1.69856 1.41742 1.36257 1.21350 0.98212 0.93605 0.97316 1.21805 0.98235 0.92930 1.03182 1.21513 0.99703 0.98152 0.96040 1.21576 1.00341 0.97099 0.96962 1.21526 0.98389 0.94764 1.00890 1.21585 1.00667 0.98731 0.94135 0.92969 0.95820 0.95771 0.90027 0.89950 0.76133 0.73845 0.90270 0.89294 0.91339 0.91884 0.92161 0.91867 0.92237 0.91980 0.91752 0.91119 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.78 13.29 55.43 0.74 -27.05 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.53 -15.14 9.11 -34.44 -0.31 -15.46 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.04 1.01 4.26 -27.89 -0.12 0.89 16 10 C -0.13 -2.65 5.64 -27.89 -0.16 -2.80 16 11 C 0.52 10.16 7.66 -10.99 -0.08 10.08 16 12 O -0.53 -12.67 15.65 5.55 0.09 -12.59 16 13 N -0.72 -10.28 3.91 -54.93 -0.21 -10.50 16 14 C 0.16 2.01 2.09 -69.08 -0.14 1.86 16 15 H 0.12 1.69 7.58 -51.93 -0.39 1.30 16 16 C 0.46 6.34 7.59 36.00 0.27 6.61 16 17 O -0.50 -8.89 17.08 -18.75 -0.32 -9.21 16 18 O -0.51 -4.98 10.34 -39.24 -0.41 -5.39 16 19 C -0.09 -0.75 1.82 -90.62 -0.16 -0.91 16 20 C -0.12 -0.97 4.68 -26.73 -0.13 -1.09 16 21 C -0.12 -0.77 5.92 -26.73 -0.16 -0.93 16 22 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 23 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 24 C -0.11 -0.94 5.04 -26.73 -0.13 -1.08 16 25 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 26 H 0.02 0.72 8.10 -51.93 -0.42 0.29 16 27 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 28 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 30 H 0.40 4.55 8.39 -40.82 -0.34 4.21 16 31 H 0.40 2.42 9.10 45.56 0.41 2.84 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.72 5.33 -51.93 -0.28 0.44 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.61 7.44 -51.93 -0.39 0.22 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 341.90 15.07 5.15 5.15 Total: -1.00 -36.69 341.90 -7.55 -44.23 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -6.02 Total: 1.62 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -1.54 Total: -3.17 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.52 Total: -37.54 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.64 Total: -27.19 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.69 -7.55 -44.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181551.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.266 kcal (2) G-P(sol) polarization free energy of solvation -36.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds