Wall clock time and date at job start Tue Mar 31 2020 05:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99845 * 2 1 4 4 H 1.48501 * 109.46767 * 269.99637 * 3 2 1 5 5 H 1.48497 * 109.47299 * 29.99616 * 3 2 1 6 6 H 1.48501 * 109.47144 * 150.00189 * 3 2 1 7 7 C 1.37875 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99820 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00345 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47385 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47600 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99906 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00535 * 179.97438 * 11 10 9 14 14 C 1.46506 * 120.00377 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.47068 * 325.00617 * 14 13 11 16 16 C 1.50698 * 109.47006 * 84.99953 * 14 13 11 17 17 O 1.20825 * 119.99963 * 0.02562 * 16 14 13 18 18 O 1.34225 * 119.99990 * 180.02562 * 16 14 13 19 19 C 1.52997 * 109.47277 * 205.00246 * 14 13 11 20 20 C 1.52996 * 109.46975 * 179.97438 * 19 14 13 21 21 C 1.53000 * 109.47328 * 180.02562 * 20 19 14 22 22 C 1.52997 * 109.47060 * 60.00126 * 21 20 19 23 23 C 1.53006 * 109.47127 * 300.00449 * 22 21 20 24 24 C 1.52997 * 109.47164 * 59.99836 * 23 22 21 25 25 H 0.97000 * 119.99825 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47364 * 59.99541 * 9 7 2 27 27 H 1.09001 * 109.46822 * 299.99771 * 9 7 2 28 28 H 1.09007 * 109.47184 * 59.99715 * 10 9 7 29 29 H 1.09001 * 109.47135 * 299.99802 * 10 9 7 30 30 H 0.96997 * 119.99946 * 0.02562 * 13 11 10 31 31 H 0.96708 * 116.99703 * 180.02562 * 18 16 14 32 32 H 1.08992 * 109.47280 * 300.00348 * 19 14 13 33 33 H 1.09004 * 109.47368 * 60.00217 * 20 19 14 34 34 H 1.09001 * 109.47372 * 300.00372 * 20 19 14 35 35 H 1.09002 * 109.47398 * 180.02562 * 21 20 19 36 36 H 1.09001 * 109.47194 * 300.00476 * 21 20 19 37 37 H 1.08998 * 109.47533 * 59.99948 * 22 21 20 38 38 H 1.08996 * 109.47853 * 180.02562 * 22 21 20 39 39 H 1.09001 * 109.47002 * 299.99574 * 23 22 21 40 40 H 1.09000 * 109.47050 * 179.97438 * 23 22 21 41 41 H 1.09002 * 109.47045 * 180.02562 * 24 23 22 42 42 H 1.09001 * 109.47375 * 59.99966 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4919 -4.9671 0.0012 12 8 0.2790 -4.9672 0.0011 13 7 2.1657 -6.1343 0.0008 14 6 1.4332 -7.4031 0.0008 15 1 0.5227 -7.2970 0.5905 16 6 1.0744 -7.7760 -1.4145 17 8 1.3977 -7.0561 -2.3294 18 8 0.3956 -8.9079 -1.6588 19 6 2.3106 -8.4985 0.6100 20 6 1.5454 -9.8234 0.6106 21 6 2.4225 -10.9187 1.2204 22 6 2.7867 -10.5395 2.6572 23 6 3.5519 -9.2146 2.6566 24 6 2.6748 -8.1193 2.0469 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 2.8720 -3.6043 0.8905 29 1 2.8719 -3.6043 -0.8895 30 1 3.1357 -6.1343 0.0004 31 1 0.1885 -9.1049 -2.5827 32 1 3.2211 -8.6046 0.0204 33 1 1.2855 -10.0934 -0.4130 34 1 0.6350 -9.7169 1.2005 35 1 1.8775 -11.8627 1.2204 36 1 3.3331 -11.0253 0.6308 37 1 1.8762 -10.4329 3.2468 38 1 3.4119 -11.3196 3.0916 39 1 4.4625 -9.3211 2.0671 40 1 3.8110 -8.9442 3.6803 41 1 3.2201 -7.1755 2.0461 42 1 1.7642 -8.0127 2.6364 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608181551.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:38 Heat of formation + Delta-G solvation = -189.295780 kcal Electronic energy + Delta-G solvation = -22826.941639 eV Core-core repulsion = 19383.347287 eV Total energy + Delta-G solvation = -3443.594353 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.97918 -40.39381 -39.34956 -37.24332 -35.94281 -35.54361 -33.25310 -32.19723 -31.52719 -28.58874 -27.25448 -24.32138 -23.37595 -23.14249 -21.80972 -21.44939 -20.52796 -19.16705 -18.87189 -18.05596 -17.59008 -17.06306 -16.81398 -16.42114 -16.23420 -15.83780 -15.11053 -14.95862 -14.89048 -14.49379 -14.27800 -14.20517 -13.72929 -13.27937 -13.19545 -13.09482 -13.01379 -12.82091 -12.54563 -12.47046 -12.00373 -11.93965 -11.93335 -11.77540 -11.65469 -11.32957 -11.31490 -11.12374 -10.87230 -10.77412 -10.57787 -10.33437 -8.18247 -6.32418 1.10367 1.41769 1.44963 1.45464 1.56023 1.91174 2.32670 2.44612 3.14745 3.42483 3.76075 3.85229 4.01208 4.12706 4.15935 4.31464 4.41984 4.48617 4.50854 4.54510 4.60996 4.65310 4.70126 4.87121 5.01746 5.07418 5.21005 5.26865 5.28424 5.33263 5.35307 5.45255 5.49200 5.53318 5.56732 5.61805 5.63977 5.84428 6.16865 6.45185 6.85496 6.91442 7.22290 7.37768 8.94580 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.025402 B = 0.003509 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.021979 B = 7976.617370 C = 8687.521547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.253 1.253 7 C -0.543 4.543 8 H 0.077 0.923 9 C 0.043 3.957 10 C -0.118 4.118 11 C 0.520 3.480 12 O -0.583 6.583 13 N -0.700 5.700 14 C 0.157 3.843 15 H 0.111 0.889 16 C 0.469 3.531 17 O -0.546 6.546 18 O -0.496 6.496 19 C -0.073 4.073 20 C -0.122 4.122 21 C -0.113 4.113 22 C -0.123 4.123 23 C -0.115 4.115 24 C -0.114 4.114 25 H 0.263 0.737 26 H -0.023 1.023 27 H -0.013 1.013 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.421 0.579 31 H 0.422 0.578 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.598 -25.748 3.648 27.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.799 3.201 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.177 1.177 7 C -0.581 4.581 8 H 0.095 0.905 9 C 0.005 3.995 10 C -0.158 4.158 11 C 0.309 3.691 12 O -0.462 6.462 13 N -0.354 5.354 14 C 0.049 3.951 15 H 0.128 0.872 16 C 0.310 3.690 17 O -0.436 6.436 18 O -0.309 6.309 19 C -0.092 4.092 20 C -0.160 4.160 21 C -0.150 4.150 22 C -0.160 4.160 23 C -0.152 4.152 24 C -0.152 4.152 25 H 0.071 0.929 26 H -0.005 1.005 27 H 0.005 0.995 28 H 0.131 0.869 29 H 0.118 0.882 30 H 0.260 0.740 31 H 0.284 0.716 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.774 -25.370 3.807 27.113 hybrid contribution -0.170 1.073 -0.929 1.429 sum 8.604 -24.297 2.878 25.935 Atomic orbital electron populations 1.70185 1.08345 1.27811 1.51475 1.26160 0.95747 1.04020 0.94612 0.85298 0.78741 0.77609 0.78451 1.19909 1.21089 1.17688 1.21710 0.94037 0.91541 1.50794 0.90509 1.18684 0.93690 0.92483 0.94654 1.21641 0.99404 0.89748 1.05006 1.21410 0.87856 0.86734 0.73090 1.90655 1.16644 1.88248 1.50687 1.45651 1.10972 1.03334 1.75424 1.20702 0.99338 0.85924 0.89090 0.87169 1.24349 0.73596 0.77914 0.93101 1.90736 1.52784 1.52144 1.47951 1.84575 1.68541 1.39730 1.38045 1.21346 0.97943 0.92511 0.97440 1.21797 0.98247 0.92728 1.03214 1.21493 0.99740 0.97808 0.95965 1.21587 1.00307 0.97179 0.96943 1.21508 0.98336 0.94289 1.01084 1.21598 1.00566 0.99371 0.93666 0.92860 1.00476 0.99492 0.86890 0.88194 0.74029 0.71596 0.88882 0.89356 0.91918 0.91071 0.91470 0.92357 0.91161 0.91103 0.91429 0.91331 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.47 13.29 21.45 0.28 -60.19 16 2 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 3 Si 0.98 44.91 29.54 68.60 2.03 46.93 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.25 -10.74 7.11 99.48 0.71 -10.04 16 7 C -0.54 -31.46 9.11 25.60 0.23 -31.23 16 8 H 0.08 4.03 7.74 -2.91 -0.02 4.01 16 9 C 0.04 2.43 4.26 29.84 0.13 2.56 16 10 C -0.12 -4.90 5.64 29.84 0.17 -4.73 16 11 C 0.52 20.74 7.66 87.66 0.67 21.41 16 12 O -0.58 -29.25 15.65 -3.05 -0.05 -29.30 16 13 N -0.70 -19.41 3.91 -446.09 -1.75 -21.16 16 14 C 0.16 3.83 2.09 44.24 0.09 3.92 16 15 H 0.11 3.07 7.58 -2.39 -0.02 3.06 16 16 C 0.47 12.53 7.59 71.24 0.54 13.07 16 17 O -0.55 -19.40 17.08 21.97 0.38 -19.03 16 18 O -0.50 -8.94 10.34 -51.37 -0.53 -9.47 16 19 C -0.07 -1.15 1.82 -10.80 -0.02 -1.17 16 20 C -0.12 -1.67 4.68 30.59 0.14 -1.53 16 21 C -0.11 -1.18 5.92 30.59 0.18 -1.00 16 22 C -0.12 -1.30 5.92 30.60 0.18 -1.12 16 23 C -0.11 -1.31 5.92 30.60 0.18 -1.13 16 24 C -0.11 -1.71 5.04 30.59 0.15 -1.55 16 25 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 26 H -0.02 -1.52 8.10 -2.39 -0.02 -1.54 16 27 H -0.01 -0.85 8.10 -2.39 -0.02 -0.87 16 28 H 0.11 3.94 8.14 -2.38 -0.02 3.92 16 29 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 30 H 0.42 8.67 8.39 -92.71 -0.78 7.89 16 31 H 0.42 4.36 9.10 -74.05 -0.67 3.68 16 32 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.09 1.22 5.33 -2.39 -0.01 1.21 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.07 1.05 7.44 -2.39 -0.02 1.03 16 42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -83.24 341.90 3.05 -80.18 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -0.42 Total: 14.54 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 3.12 Total: -2.51 kcal Atomic # 7 Polarization: -79.89 SS G_CDS: -1.46 Total: -81.35 kcal Atomic # 8 Polarization: -57.60 SS G_CDS: -0.20 Total: -57.80 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -83.24 3.05 -80.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181551.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.112 kcal (2) G-P(sol) polarization free energy of solvation -83.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds