Wall clock time and date at job start Tue Mar 31 2020 05:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00007 * 2 1 4 4 H 1.48498 * 109.47039 * 239.99103 * 3 2 1 5 5 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47130 * 119.99821 * 3 2 1 7 7 C 1.37876 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27843 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 H 1.09007 * 109.47747 * 35.00142 * 14 13 11 16 16 C 1.50703 * 109.47430 * 274.99668 * 14 13 11 17 17 O 1.20824 * 119.99526 * 0.02562 * 16 14 13 18 18 O 1.34222 * 120.00006 * 180.02562 * 16 14 13 19 19 C 1.53006 * 109.47036 * 154.99621 * 14 13 11 20 20 C 1.53001 * 109.47065 * 300.00145 * 19 14 13 21 21 C 1.53002 * 109.46745 * 179.97438 * 20 19 14 22 22 C 1.53003 * 109.47107 * 60.00077 * 21 20 19 23 23 C 1.52997 * 109.46775 * 299.99473 * 22 21 20 24 24 C 1.52995 * 109.47067 * 60.00566 * 23 22 21 25 25 H 0.97008 * 119.99515 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47500 * 59.99948 * 9 7 2 27 27 H 1.08998 * 109.47585 * 299.99943 * 9 7 2 28 28 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 29 29 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 30 30 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 31 31 H 0.96702 * 116.99694 * 179.97438 * 18 16 14 32 32 H 1.09002 * 109.47134 * 59.99771 * 19 14 13 33 33 H 1.09001 * 109.46721 * 299.99266 * 20 19 14 34 34 H 1.08990 * 109.47355 * 59.99647 * 20 19 14 35 35 H 1.08994 * 109.47243 * 299.99848 * 21 20 19 36 36 H 1.09001 * 109.46762 * 179.97438 * 21 20 19 37 37 H 1.09002 * 109.46968 * 179.97438 * 22 21 20 38 38 H 1.08994 * 109.47257 * 59.99779 * 22 21 20 39 39 H 1.08994 * 109.47479 * 300.00170 * 23 22 21 40 40 H 1.09003 * 109.46891 * 180.02562 * 23 22 21 41 41 H 1.09001 * 109.46956 * 179.97438 * 24 23 22 42 42 H 1.09002 * 109.47452 * 59.99747 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1031 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9672 -0.0001 12 8 0.2788 -4.9671 0.0000 13 7 2.1655 -6.1344 0.0055 14 6 1.4330 -7.4030 0.0109 15 1 0.5224 -7.2995 -0.5794 16 6 1.0740 -7.7698 1.4279 17 8 1.3966 -7.0455 2.3395 18 8 0.3959 -8.9011 1.6770 19 6 2.3104 -8.5012 -0.5935 20 6 2.6748 -8.1288 -2.0321 21 6 3.5527 -9.2267 -2.6362 22 6 2.7881 -10.5520 -2.6304 23 6 2.4237 -10.9242 -1.1919 24 6 1.5459 -9.8265 -0.5878 25 1 -0.4850 0.8402 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8719 -3.6043 0.8906 29 1 2.8719 -3.6043 -0.8894 30 1 3.1355 -6.1343 0.0057 31 1 0.1888 -9.0941 2.6017 32 1 3.2209 -8.6048 -0.0033 33 1 1.7643 -8.0253 -2.6223 34 1 3.2197 -7.1850 -2.0361 35 1 4.4631 -9.3299 -2.0459 36 1 3.8119 -8.9616 -3.6612 37 1 3.4133 -11.3340 -3.0613 38 1 1.8777 -10.4488 -3.2208 39 1 3.3341 -11.0275 -0.6016 40 1 1.8794 -11.8686 -1.1877 41 1 1.2859 -10.0919 0.4370 42 1 0.6354 -9.7233 -1.1781 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608181552.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:42 Heat of formation + Delta-G solvation = -163.447854 kcal Electronic energy + Delta-G solvation = -22825.488180 eV Core-core repulsion = 19383.014677 eV Total energy + Delta-G solvation = -3442.473503 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.87162 -39.00989 -38.50186 -36.17954 -34.74308 -33.43570 -31.73471 -30.98993 -30.64017 -27.37741 -25.44629 -23.22126 -22.46933 -21.86962 -20.71523 -20.28348 -19.49443 -18.12592 -17.16173 -16.76499 -16.11536 -15.84711 -15.46501 -15.05563 -14.64820 -14.48017 -14.40821 -14.30190 -13.66315 -13.31735 -12.92640 -12.54944 -12.43631 -12.33672 -12.15913 -12.11742 -11.57814 -11.34860 -11.30016 -11.15000 -10.89513 -10.74328 -10.66350 -10.59871 -10.40192 -10.22483 -9.93202 -9.66897 -9.23426 -9.07559 -8.99115 -8.29519 -5.93631 -3.98034 2.20292 2.68893 3.28556 3.36396 3.40828 3.42607 3.51422 4.24484 4.44397 4.49172 4.55349 4.80226 4.90162 4.96340 5.10320 5.20520 5.26158 5.31450 5.32563 5.41209 5.45814 5.56269 5.69951 5.82341 5.86901 5.87105 5.92387 6.03113 6.16647 6.21228 6.23156 6.26918 6.44879 6.49244 6.89878 7.74596 7.77450 7.87495 7.88667 8.09471 8.40284 8.69939 9.10013 9.65245 11.17339 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.025449 B = 0.003508 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.978053 B = 7980.318686 C = 8689.198837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.128 4.128 11 C 0.518 3.482 12 O -0.530 6.530 13 N -0.723 5.723 14 C 0.161 3.839 15 H 0.124 0.876 16 C 0.464 3.536 17 O -0.500 6.500 18 O -0.513 6.513 19 C -0.086 4.086 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.116 4.116 24 C -0.124 4.124 25 H 0.261 0.739 26 H 0.024 0.976 27 H 0.023 0.977 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.404 0.596 31 H 0.403 0.597 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.089 0.911 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.930 -24.572 -3.181 25.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.168 4.168 11 C 0.307 3.693 12 O -0.405 6.405 13 N -0.377 5.377 14 C 0.053 3.947 15 H 0.142 0.858 16 C 0.303 3.697 17 O -0.386 6.386 18 O -0.325 6.325 19 C -0.105 4.105 20 C -0.151 4.151 21 C -0.156 4.156 22 C -0.160 4.160 23 C -0.154 4.154 24 C -0.162 4.162 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.239 0.761 31 H 0.262 0.738 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.048 -24.112 -3.333 25.081 hybrid contribution 0.738 0.832 0.780 1.358 sum 6.786 -23.279 -2.553 24.382 Atomic orbital electron populations 1.69994 1.06062 1.26674 1.50133 1.25025 0.94831 0.99222 0.95307 0.86642 0.79532 0.83148 0.78540 1.20242 1.21302 1.20248 1.21180 0.92906 0.90990 1.51481 0.92617 1.18902 0.93168 0.89323 0.98637 1.21870 1.00784 0.91427 1.02681 1.21678 0.88683 0.85538 0.73380 1.90671 1.14513 1.87436 1.47840 1.46019 1.10128 1.04001 1.77593 1.20457 0.99049 0.85935 0.89276 0.85849 1.24266 0.74255 0.77806 0.93368 1.90744 1.50626 1.50281 1.46917 1.84617 1.69889 1.41786 1.36180 1.21352 0.98216 0.93583 0.97334 1.21583 1.00660 0.98735 0.94135 1.21525 0.98388 0.94748 1.00905 1.21576 1.00346 0.97107 0.96954 1.21511 0.99701 0.98152 0.96043 1.21804 0.98233 0.92905 1.03210 0.92907 0.95791 0.95812 0.89945 0.90033 0.76130 0.73846 0.90277 0.91260 0.91122 0.91979 0.91754 0.92239 0.91872 0.92160 0.91886 0.89293 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.80 13.29 55.43 0.74 -27.07 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.53 -15.18 9.11 -34.44 -0.31 -15.50 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.13 -2.65 5.64 -27.88 -0.16 -2.81 16 11 C 0.52 10.17 7.66 -10.98 -0.08 10.08 16 12 O -0.53 -12.67 15.65 5.55 0.09 -12.59 16 13 N -0.72 -10.28 3.91 -54.93 -0.22 -10.50 16 14 C 0.16 2.01 2.09 -69.08 -0.14 1.86 16 15 H 0.12 1.69 7.58 -51.93 -0.39 1.30 16 16 C 0.46 6.34 7.59 36.01 0.27 6.61 16 17 O -0.50 -8.90 17.08 -18.75 -0.32 -9.22 16 18 O -0.51 -4.98 10.34 -39.24 -0.41 -5.39 16 19 C -0.09 -0.75 1.81 -90.62 -0.16 -0.91 16 20 C -0.11 -0.94 5.05 -26.73 -0.13 -1.08 16 21 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 22 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 23 C -0.12 -0.77 5.92 -26.74 -0.16 -0.93 16 24 C -0.12 -0.97 4.68 -26.73 -0.13 -1.09 16 25 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 26 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 27 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 28 H 0.08 1.61 8.14 -51.92 -0.42 1.19 16 29 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.40 4.55 8.39 -40.82 -0.34 4.21 16 31 H 0.40 2.42 9.10 45.56 0.41 2.84 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.61 7.44 -51.93 -0.39 0.22 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.72 5.32 -51.93 -0.28 0.44 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 341.90 15.07 5.15 5.15 Total: -1.00 -36.68 341.90 -7.54 -44.22 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.02 Total: 1.66 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -1.54 Total: -3.18 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.52 Total: -37.57 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.64 Total: -27.19 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.68 -7.54 -44.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181552.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.223 kcal (2) G-P(sol) polarization free energy of solvation -36.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds