Wall clock time and date at job start Tue Mar 31 2020 05:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86806 * 120.00257 * 2 1 4 4 H 1.48498 * 109.47055 * 269.66390 * 3 2 1 5 5 H 1.48498 * 109.46909 * 29.65915 * 3 2 1 6 6 H 1.48499 * 109.47128 * 149.66327 * 3 2 1 7 7 C 1.38954 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99916 * 26.12044 * 7 2 1 9 9 N 1.37098 * 120.00254 * 206.11719 * 7 2 1 10 10 C 1.34779 * 119.99827 * 52.01237 * 9 7 2 11 11 O 1.21293 * 120.00193 * 176.37143 * 10 9 7 12 12 C 1.50700 * 119.99766 * 356.36679 * 10 9 7 13 13 C 1.53003 * 109.47301 * 173.78031 * 12 10 9 14 14 C 1.52995 * 109.47484 * 175.83649 * 13 12 10 15 15 C 1.52998 * 109.47164 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47148 * 179.97438 * 15 14 13 17 17 O 1.20830 * 120.00262 * 359.97438 * 16 15 14 18 18 O 1.34233 * 120.00245 * 179.97438 * 16 15 14 19 19 C 1.46496 * 120.00414 * 232.28647 * 9 7 2 20 20 C 1.54266 * 110.03315 * 57.63125 * 19 9 7 21 21 C 1.54959 * 104.16339 * 217.13861 * 20 19 9 22 22 C 1.54891 * 102.77891 * 37.88668 * 21 20 19 23 23 C 1.53872 * 110.03266 * 300.41725 * 19 9 7 24 24 H 0.96996 * 120.00016 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.47501 * 293.77620 * 12 10 9 26 26 H 1.09001 * 109.47492 * 53.77725 * 12 10 9 27 27 H 1.08995 * 109.46838 * 295.83869 * 13 12 10 28 28 H 1.09004 * 109.46974 * 55.83607 * 13 12 10 29 29 H 1.09004 * 109.47240 * 299.99699 * 14 13 12 30 30 H 1.08997 * 109.47321 * 59.99725 * 14 13 12 31 31 H 1.08994 * 109.47180 * 299.99589 * 15 14 13 32 32 H 1.09004 * 109.47215 * 60.00006 * 15 14 13 33 33 H 0.96698 * 117.00042 * 180.02562 * 18 16 15 34 34 H 1.09000 * 110.02012 * 179.02329 * 19 9 7 35 35 H 1.09009 * 110.48562 * 335.79032 * 20 19 9 36 36 H 1.09002 * 110.48967 * 98.42687 * 20 19 9 37 37 H 1.08999 * 110.71919 * 279.57584 * 21 20 19 38 38 H 1.09005 * 110.92475 * 156.29535 * 21 20 19 39 39 H 1.08994 * 110.48885 * 203.40511 * 22 21 20 40 40 H 1.09004 * 110.59435 * 80.81589 * 22 21 20 41 41 H 1.08998 * 110.03135 * 238.56734 * 23 19 9 42 42 H 1.09003 * 110.03182 * 359.97438 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.5028 2.0423 -1.4000 5 1 1.4420 2.6547 0.6928 6 1 3.5421 1.4422 0.7071 7 6 2.0088 -1.2034 0.0005 8 1 1.5515 -2.0911 -0.4109 9 7 3.2748 -1.2638 0.5232 10 6 3.5146 -0.7955 1.7641 11 8 4.6193 -0.9085 2.2520 12 6 2.4102 -0.1314 2.5452 13 6 2.8970 0.1655 3.9650 14 6 1.8134 0.9321 4.7259 15 6 2.3005 1.2295 6.1455 16 6 1.2335 1.9852 6.8947 17 8 0.1905 2.2583 6.3492 18 8 1.4416 2.3549 8.1683 19 6 4.3682 -1.8319 -0.2692 20 6 4.5123 -1.0629 -1.5987 21 6 4.8753 -2.1582 -2.6329 22 6 4.0101 -3.3595 -2.1777 23 6 4.0494 -3.2916 -0.6370 24 1 -0.4850 0.8400 -0.0004 25 1 2.1284 0.8008 2.0555 26 1 1.5462 -0.7946 2.5886 27 1 3.1086 -0.7715 4.4799 28 1 3.8043 0.7680 3.9195 29 1 1.6018 1.8693 4.2110 30 1 0.9062 0.3297 4.7715 31 1 2.5124 0.2927 6.6606 32 1 3.2077 1.8322 6.0995 33 1 0.7279 2.8373 8.6076 34 1 5.3007 -1.7837 0.2930 35 1 3.5706 -0.5831 -1.8659 36 1 5.3109 -0.3244 -1.5277 37 1 5.9360 -2.4036 -2.5786 38 1 4.6036 -1.8467 -3.6416 39 1 4.4424 -4.2962 -2.5295 40 1 2.9869 -3.2535 -2.5382 41 1 4.8276 -3.9517 -0.2540 42 1 3.0813 -3.5775 -0.2255 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608183943.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:36 Heat of formation + Delta-G solvation = -145.573097 kcal Electronic energy + Delta-G solvation = -23054.460230 eV Core-core repulsion = 19612.761835 eV Total energy + Delta-G solvation = -3441.698395 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.26004 -39.29234 -37.04379 -36.28766 -34.78955 -34.14953 -31.82376 -30.58956 -28.08838 -27.45836 -25.43897 -24.44998 -22.01839 -20.51911 -20.11080 -19.53971 -19.20388 -18.06359 -16.90284 -16.42414 -16.33576 -15.79802 -15.63274 -14.89819 -14.60163 -14.02526 -13.83730 -13.69391 -13.34678 -13.07607 -12.62749 -12.51552 -12.20417 -11.95732 -11.58358 -11.52752 -11.29091 -11.08482 -10.90378 -10.84780 -10.76417 -10.58397 -10.55808 -10.48474 -10.36254 -10.20648 -10.07125 -9.86080 -9.70147 -8.94275 -8.56125 -7.50812 -6.51879 -4.19035 2.18561 3.00772 3.08208 3.21210 3.29463 3.80439 4.11731 4.44994 4.83320 4.88322 5.05711 5.19005 5.25218 5.27857 5.48452 5.55703 5.65769 5.71346 5.96817 5.99719 6.13304 6.15612 6.17423 6.21765 6.23104 6.27851 6.35884 6.41862 6.44795 6.45509 6.54705 6.60295 6.72807 6.83600 6.91718 6.95757 7.07194 7.69047 7.84480 7.85469 8.50456 8.98476 9.33678 9.78131 10.57803 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.024101 B = 0.004421 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.514144 B = 6332.177826 C = 6895.908543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.082 3.918 3 Si 0.849 3.151 4 H -0.279 1.279 5 H -0.280 1.280 6 H -0.259 1.259 7 C -0.346 4.346 8 H 0.098 0.902 9 N -0.466 5.466 10 C 0.496 3.504 11 O -0.600 6.600 12 C -0.121 4.121 13 C -0.103 4.103 14 C -0.112 4.112 15 C -0.112 4.112 16 C 0.475 3.525 17 O -0.513 6.513 18 O -0.522 6.522 19 C 0.129 3.871 20 C -0.132 4.132 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.125 4.125 24 H 0.276 0.724 25 H 0.071 0.929 26 H 0.101 0.899 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.406 0.594 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.328 0.668 6.322 7.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.127 4.127 3 Si 0.674 3.326 4 H -0.205 1.205 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.473 4.473 8 H 0.116 0.884 9 N -0.187 5.187 10 C 0.286 3.714 11 O -0.485 6.485 12 C -0.161 4.161 13 C -0.141 4.141 14 C -0.150 4.150 15 C -0.149 4.149 16 C 0.318 3.682 17 O -0.400 6.400 18 O -0.334 6.334 19 C 0.025 3.975 20 C -0.171 4.171 21 C -0.158 4.158 22 C -0.155 4.155 23 C -0.163 4.163 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.119 0.881 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.265 0.735 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.695 0.543 6.195 7.792 hybrid contribution -0.324 1.443 0.037 1.480 sum 4.371 1.986 6.232 7.867 Atomic orbital electron populations 1.69793 1.06275 1.28267 1.43869 1.25577 0.94881 0.98042 0.94152 0.87339 0.81892 0.84579 0.78765 1.20543 1.20555 1.18304 1.18741 0.88017 0.96583 1.43989 0.88448 1.43810 1.08113 1.55561 1.11211 1.20576 0.88817 0.80135 0.81855 1.90500 1.25740 1.62105 1.70167 1.21550 0.99118 1.01375 0.94048 1.21361 0.97455 1.00394 0.94902 1.21513 0.99657 1.01875 0.91932 1.21453 0.96409 1.00940 0.96116 1.23801 0.88302 0.76592 0.79539 1.90748 1.28269 1.52568 1.68454 1.84561 1.50263 1.70561 1.28056 1.21656 0.91817 0.92214 0.91807 1.22705 1.02002 0.97457 0.94899 1.22410 0.98927 0.96060 0.98362 1.22268 1.00170 0.97100 0.95949 1.22371 1.01953 0.96556 0.95461 0.91384 0.91120 0.88064 0.91421 0.91504 0.91222 0.90624 0.87489 0.87643 0.73549 0.90053 0.89688 0.92922 0.92312 0.92183 0.92790 0.91385 0.92824 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.53 13.96 55.50 0.77 -21.76 16 2 C 0.08 2.09 4.08 -17.47 -0.07 2.02 16 3 Si 0.85 20.16 24.09 -169.99 -4.10 16.07 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.26 -6.31 5.95 56.52 0.34 -5.97 16 7 C -0.35 -8.64 7.26 -14.93 -0.11 -8.75 16 8 H 0.10 2.59 7.39 -52.48 -0.39 2.20 16 9 N -0.47 -10.95 1.86 -106.54 -0.20 -11.15 16 10 C 0.50 11.86 5.80 -10.98 -0.06 11.79 16 11 O -0.60 -15.11 15.25 5.55 0.08 -15.03 16 12 C -0.12 -2.62 3.72 -27.88 -0.10 -2.72 16 13 C -0.10 -1.80 4.61 -26.73 -0.12 -1.93 16 14 C -0.11 -1.71 4.50 -26.73 -0.12 -1.83 16 15 C -0.11 -1.31 5.81 -27.88 -0.16 -1.47 16 16 C 0.48 5.99 8.33 36.00 0.30 6.29 16 17 O -0.51 -8.37 16.74 -18.75 -0.31 -8.69 16 18 O -0.52 -5.01 13.42 -39.27 -0.53 -5.54 16 19 C 0.13 2.68 3.29 -66.82 -0.22 2.46 16 20 C -0.13 -2.53 6.42 -25.03 -0.16 -2.69 16 21 C -0.12 -1.86 6.91 -24.70 -0.17 -2.03 16 22 C -0.12 -1.85 6.83 -25.07 -0.17 -2.02 16 23 C -0.12 -2.27 6.26 -25.61 -0.16 -2.43 16 24 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 25 H 0.07 1.60 3.40 -51.93 -0.18 1.42 16 26 H 0.10 2.24 7.77 -51.93 -0.40 1.84 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.07 1.19 7.89 -51.93 -0.41 0.78 16 29 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 30 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 31 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.41 2.21 9.10 45.56 0.41 2.62 16 34 H 0.08 1.76 6.95 -51.93 -0.36 1.40 16 35 H 0.08 1.82 6.41 -51.92 -0.33 1.48 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.07 1.49 6.95 -51.93 -0.36 1.13 16 LS Contribution 332.95 15.07 5.02 5.02 Total: -1.00 -30.48 332.95 -6.46 -36.93 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -5.86 Total: 7.45 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -1.34 Total: -3.30 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.58 Total: -32.91 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.76 Total: -29.26 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.10 Total: 16.07 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.48 -6.46 -36.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183943.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.640 kcal (2) G-P(sol) polarization free energy of solvation -30.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds