Wall clock time and date at job start Tue Mar 31 2020 05:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50707 * 110.63809 * 2 1 4 4 O 1.20832 * 119.99960 * 236.85886 * 3 2 1 5 5 O 1.34226 * 119.99895 * 56.86320 * 3 2 1 6 6 C 1.55154 * 110.87744 * 123.24981 * 2 1 3 7 7 C 1.55123 * 101.48369 * 82.76702 * 6 2 1 8 8 N 1.47423 * 104.72450 * 37.29852 * 7 6 2 9 9 C 1.34777 * 125.64665 * 155.81937 * 8 7 6 10 10 O 1.21278 * 119.99854 * 179.69389 * 9 8 7 11 11 C 1.50703 * 120.00161 * 359.68696 * 9 8 7 12 12 C 1.53000 * 109.46912 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.46886 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.46912 * 179.97438 * 14 13 12 16 16 H 1.08009 * 120.00339 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00310 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99776 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00473 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47112 * 60.00220 * 19 17 15 21 21 H 1.48500 * 109.47454 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47261 * 300.00048 * 19 17 15 23 23 C 1.47018 * 108.69955 * 335.54881 * 8 7 6 24 24 H 1.08999 * 109.46552 * 183.14065 * 1 2 3 25 25 H 1.08999 * 109.46744 * 303.13966 * 1 2 3 26 26 H 1.08994 * 109.47312 * 63.14182 * 1 2 3 27 27 H 0.96704 * 116.99517 * 179.97438 * 5 3 2 28 28 H 1.09002 * 111.00352 * 201.00571 * 6 2 1 29 29 H 1.09006 * 111.00140 * 324.81892 * 6 2 1 30 30 H 1.09003 * 110.49564 * 278.45141 * 7 6 2 31 31 H 1.08999 * 110.34198 * 156.06541 * 7 6 2 32 32 H 1.09002 * 109.47152 * 60.00245 * 11 9 8 33 33 H 1.09001 * 109.46980 * 300.00345 * 11 9 8 34 34 H 1.09001 * 109.47194 * 299.99742 * 12 11 9 35 35 H 1.08992 * 109.47399 * 59.99914 * 12 11 9 36 36 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 37 37 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 38 38 H 1.08992 * 109.47098 * 299.99158 * 14 13 12 39 39 H 1.09001 * 109.47583 * 60.00267 * 14 13 12 40 40 H 0.96998 * 120.00187 * 179.97438 * 18 17 15 41 41 H 1.09008 * 109.87927 * 120.70633 * 23 8 7 42 42 H 1.08995 * 109.87990 * 241.86675 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0612 1.4103 0.0000 4 8 2.8095 1.7741 -0.8762 5 8 1.7031 2.2624 0.9734 6 6 2.0829 -0.7948 1.2123 7 6 2.0142 -2.2516 0.6838 8 7 2.3757 -2.1505 -0.7418 9 6 2.8903 -3.1435 -1.4940 10 8 3.1460 -2.9482 -2.6633 11 6 3.1480 -4.4963 -0.8820 12 6 3.7293 -5.4334 -1.9426 13 6 3.9903 -6.8071 -1.3215 14 6 4.5722 -7.7440 -2.3819 15 6 4.8299 -9.0968 -1.7699 16 1 4.6011 -9.2711 -0.7289 17 6 5.3568 -10.1125 -2.5393 18 7 5.6340 -9.9008 -3.8073 19 14 5.6756 -11.7896 -1.7809 20 1 4.4000 -12.3520 -1.2692 21 1 6.2404 -12.6990 -2.8101 22 1 6.6402 -11.6510 -0.6605 23 6 2.0760 -0.7890 -1.2087 24 1 -0.3632 -1.0261 0.0563 25 1 -0.3633 0.5618 0.8605 26 1 -0.3633 0.4643 -0.9167 27 1 2.0697 3.1562 0.9312 28 1 3.1098 -0.5043 1.4345 29 1 1.4450 -0.6672 2.0870 30 1 1.0052 -2.6497 0.7921 31 1 2.7298 -2.8809 1.2130 32 1 2.2120 -4.9091 -0.5056 33 1 3.8566 -4.3942 -0.0601 34 1 3.0209 -5.5355 -2.7648 35 1 4.6652 -5.0205 -2.3186 36 1 4.6985 -6.7053 -0.4992 37 1 3.0541 -7.2198 -0.9457 38 1 3.8644 -7.8459 -3.2044 39 1 5.5086 -7.3311 -2.7572 40 1 6.0050 -10.6151 -4.3485 41 1 2.9851 -0.3160 -1.5802 42 1 1.3251 -0.8248 -1.9979 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609811664.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:54 Heat of formation + Delta-G solvation = -150.858961 kcal Electronic energy + Delta-G solvation = -21945.344822 eV Core-core repulsion = 18503.417215 eV Total energy + Delta-G solvation = -3441.927607 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.35432 -39.84713 -37.89264 -36.58840 -34.87748 -33.43772 -32.55105 -30.03575 -29.78829 -27.36748 -25.84827 -24.66717 -23.16110 -22.10790 -20.27032 -19.97209 -19.33482 -18.31223 -17.52339 -16.71591 -16.18176 -16.08304 -15.82895 -15.56083 -14.82186 -14.45724 -14.32631 -14.23188 -13.72243 -13.19690 -13.04337 -12.75583 -12.64461 -12.53066 -12.31107 -12.05554 -12.02337 -11.65893 -11.60548 -11.51880 -11.39442 -10.95275 -10.81730 -10.52346 -10.50491 -10.38470 -9.82682 -9.58893 -9.20785 -8.97400 -8.83671 -8.28371 -5.93169 -3.95825 1.68725 2.31291 2.69598 2.93360 3.36480 3.40879 3.42995 3.68039 3.90051 4.22900 4.50102 4.55899 4.61418 4.74701 4.83645 5.06989 5.17989 5.21282 5.27968 5.31981 5.33540 5.40234 5.41943 5.50121 5.56527 5.66441 5.83289 5.97677 6.05618 6.15581 6.32772 6.56564 6.85941 7.03495 7.21722 7.34418 7.39326 7.75943 7.92467 8.08276 8.19152 8.49758 9.11720 9.67608 11.18141 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.046502 B = 0.002431 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.984329 B =11512.777594 C =11776.182807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.068 4.068 3 C 0.494 3.506 4 O -0.505 6.505 5 O -0.511 6.511 6 C -0.117 4.117 7 C 0.099 3.901 8 N -0.627 5.627 9 C 0.529 3.471 10 O -0.529 6.529 11 C -0.132 4.132 12 C -0.105 4.105 13 C -0.109 4.109 14 C 0.020 3.980 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.120 3.880 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.412 0.588 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.088 0.912 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.118 24.267 14.159 30.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.070 4.070 3 C 0.335 3.665 4 O -0.392 6.392 5 O -0.323 6.323 6 C -0.155 4.155 7 C -0.024 4.024 8 N -0.364 5.364 9 C 0.319 3.681 10 O -0.404 6.404 11 C -0.172 4.172 12 C -0.143 4.143 13 C -0.147 4.147 14 C -0.017 4.017 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.003 4.003 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.271 0.729 28 H 0.102 0.898 29 H 0.118 0.882 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.816 23.903 13.058 29.690 hybrid contribution 0.445 -0.223 0.374 0.622 sum -11.371 23.681 13.432 29.504 Atomic orbital electron populations 1.21847 0.90123 1.03994 1.03459 1.21446 0.98512 0.88230 0.98781 1.22962 0.77583 0.87694 0.78234 1.90770 1.33918 1.77722 1.36822 1.84502 1.70075 1.27264 1.50464 1.22936 1.02652 0.93726 0.96197 1.22419 1.01649 0.96776 0.81507 1.48567 1.65137 1.11347 1.11375 1.20869 0.75700 0.85481 0.86060 1.90730 1.50767 1.82445 1.16442 1.21785 1.03117 0.91275 1.01011 1.21478 1.01178 0.94905 0.96694 1.21642 0.99916 0.93369 0.99767 1.19094 0.96034 0.93029 0.93582 1.21245 1.41834 0.96343 0.96472 0.92817 1.25046 0.95807 0.98865 0.94874 1.69966 1.44198 1.33022 1.06286 0.86668 0.78493 0.84041 0.78825 1.20292 1.21335 1.20299 1.21843 1.02106 0.82252 0.94106 0.90407 0.90600 0.91500 0.72879 0.89826 0.88174 0.90473 0.89401 0.89096 0.89144 0.91744 0.91749 0.93486 0.93466 0.96579 0.96581 0.92987 0.89410 0.90403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.70 8.38 37.16 0.31 -0.39 16 2 C -0.07 -0.48 0.86 -153.82 -0.13 -0.62 16 3 C 0.49 4.00 7.01 36.01 0.25 4.25 16 4 O -0.51 -5.99 16.18 -18.75 -0.30 -6.29 16 5 O -0.51 -2.59 13.26 -39.25 -0.52 -3.11 16 6 C -0.12 -0.64 6.03 -24.47 -0.15 -0.79 16 7 C 0.10 0.67 6.38 -2.41 -0.02 0.66 16 8 N -0.63 -6.96 3.32 -170.39 -0.57 -7.52 16 9 C 0.53 7.83 7.85 -10.98 -0.09 7.74 16 10 O -0.53 -10.23 16.31 5.56 0.09 -10.14 16 11 C -0.13 -1.79 4.70 -27.88 -0.13 -1.92 16 12 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 13 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 14 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 15 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 16 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 17 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.73 13.29 55.43 0.74 -27.00 16 19 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C 0.12 1.27 5.88 -3.07 -0.02 1.25 16 24 H 0.08 0.36 7.41 -51.93 -0.38 -0.02 16 25 H 0.08 0.30 8.05 -51.93 -0.42 -0.12 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.41 0.53 9.10 45.56 0.41 0.95 16 28 H 0.08 0.50 8.04 -51.93 -0.42 0.08 16 29 H 0.10 0.33 8.04 -51.93 -0.42 -0.09 16 30 H 0.08 0.40 7.69 -51.93 -0.40 0.00 16 31 H 0.09 0.52 7.48 -51.93 -0.39 0.13 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.09 1.05 7.85 -51.93 -0.41 0.65 16 34 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 35 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.09 1.15 6.81 -51.92 -0.35 0.80 16 42 H 0.08 0.84 7.84 -51.93 -0.41 0.44 16 LS Contribution 348.92 15.07 5.26 5.26 Total: -1.00 -37.07 348.92 -7.20 -44.27 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -6.10 Total: -4.72 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -0.77 Total: -7.72 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.17 Total: -34.52 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.73 Total: -19.54 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -37.07 -7.20 -44.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609811664.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.587 kcal (2) G-P(sol) polarization free energy of solvation -37.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds