Wall clock time and date at job start Tue Mar 31 2020 05:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99969 * 2 1 4 4 H 1.48497 * 109.47122 * 270.00197 * 3 2 1 5 5 H 1.48499 * 109.46893 * 29.99764 * 3 2 1 6 6 H 1.48492 * 109.46992 * 149.99629 * 3 2 1 7 7 C 1.37879 * 120.00114 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99952 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00118 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47116 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47344 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99523 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00134 * 179.97438 * 11 10 9 14 14 C 1.46508 * 119.99901 * 180.02562 * 13 11 10 15 15 H 1.09002 * 108.68664 * 323.35515 * 14 13 11 16 16 C 1.54064 * 108.81370 * 81.71325 * 14 13 11 17 17 C 1.50473 * 112.49962 * 162.58177 * 16 14 13 18 18 C 1.54246 * 108.52394 * 265.85087 * 17 16 14 19 19 C 1.45547 * 112.40077 * 79.97806 * 18 17 16 20 20 C 1.54237 * 112.40794 * 298.05892 * 19 18 17 21 21 C 1.50476 * 108.51438 * 80.00066 * 20 19 18 22 22 H 1.09002 * 108.87623 * 26.62410 * 21 20 19 23 23 C 1.50698 * 108.87772 * 145.06347 * 21 20 19 24 24 O 1.20822 * 120.00052 * 120.00305 * 23 21 20 25 25 O 1.34229 * 120.00288 * 300.00095 * 23 21 20 26 26 H 0.96994 * 120.00294 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47461 * 59.99521 * 9 7 2 28 28 H 1.09011 * 109.46669 * 299.99610 * 9 7 2 29 29 H 1.09005 * 109.47471 * 59.99859 * 10 9 7 30 30 H 1.08998 * 109.46965 * 299.99360 * 10 9 7 31 31 H 0.96996 * 120.00564 * 0.02562 * 13 11 10 32 32 H 1.09003 * 108.87757 * 41.79773 * 16 14 13 33 33 H 1.09002 * 108.87323 * 283.35481 * 16 14 13 34 34 H 1.08994 * 109.62924 * 146.14287 * 17 16 14 35 35 H 1.09000 * 109.62614 * 25.55950 * 17 16 14 36 36 H 1.08997 * 108.89573 * 319.22626 * 18 17 16 37 37 H 1.08996 * 108.81921 * 200.67501 * 18 17 16 38 38 H 1.09001 * 108.89434 * 177.30529 * 19 18 17 39 39 H 1.09002 * 108.81397 * 58.76125 * 19 18 17 40 40 H 1.08999 * 109.63128 * 320.29287 * 20 19 18 41 41 H 1.09003 * 109.79008 * 199.80175 * 20 19 18 42 42 H 0.96701 * 117.00358 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4920 -4.9672 -0.0020 12 8 0.2792 -4.9672 -0.0020 13 7 2.1659 -6.1343 -0.0024 14 6 1.4334 -7.4031 -0.0035 15 1 0.5410 -7.2917 0.6125 16 6 1.0036 -7.7275 -1.4470 17 6 0.6251 -9.1730 -1.6240 18 6 1.8629 -9.9460 -2.1234 19 6 2.7853 -10.2719 -1.0458 20 6 3.3547 -9.0139 -0.3586 21 6 2.3294 -8.4945 0.6126 22 1 1.7015 -9.3234 0.9394 23 6 3.0399 -7.9224 1.8122 24 8 2.8921 -6.7594 2.1040 25 8 3.8370 -8.7050 2.5565 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5563 -0.8919 28 1 0.6241 -2.5575 0.8882 29 1 2.8714 -3.6047 0.8891 30 1 2.8726 -3.6039 -0.8910 31 1 3.1359 -6.1343 -0.0020 32 1 1.8274 -7.4934 -2.1213 33 1 0.1483 -7.1044 -1.7086 34 1 -0.1775 -9.2542 -2.3570 35 1 0.2965 -9.5849 -0.6699 36 1 2.3843 -9.3380 -2.8626 37 1 1.5326 -10.8706 -2.5969 38 1 3.6108 -10.8562 -1.4523 39 1 2.2602 -10.8727 -0.3031 40 1 3.5678 -8.2519 -1.1083 41 1 4.2700 -9.2677 0.1761 42 1 4.2717 -8.2931 3.3158 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610621630.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:28 Heat of formation + Delta-G solvation = -145.657439 kcal Electronic energy + Delta-G solvation = -23187.058938 eV Core-core repulsion = 19745.356886 eV Total energy + Delta-G solvation = -3441.702052 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.12791 -39.17664 -38.14534 -36.32812 -34.25529 -33.33574 -32.65330 -31.37505 -30.34508 -26.08459 -25.74080 -24.43789 -22.42885 -21.67295 -20.80968 -19.52691 -19.30695 -18.15436 -17.16944 -16.81686 -15.97144 -15.77816 -15.53338 -15.11244 -14.77691 -14.36765 -14.34468 -13.93447 -13.52353 -13.27280 -13.12290 -12.89645 -12.50455 -12.26650 -12.06262 -11.90261 -11.61126 -11.17208 -11.10581 -11.04942 -10.91293 -10.86662 -10.71301 -10.60673 -10.52687 -10.25692 -9.83497 -9.55016 -9.06079 -8.85814 -8.49639 -8.24215 -5.89004 -3.92723 2.06865 2.76861 3.37601 3.43176 3.46146 3.46822 3.66251 4.17145 4.35073 4.49227 4.53847 4.76817 4.80790 4.95641 5.01944 5.10246 5.25699 5.27244 5.45687 5.52993 5.58955 5.68554 5.71607 5.80329 5.84841 5.90757 6.03353 6.06481 6.18686 6.28979 6.34358 6.37611 6.43986 6.91457 7.03640 7.75030 7.82853 7.97790 8.07524 8.16523 8.48265 8.98446 9.16763 9.70116 11.22075 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.024811 B = 0.003757 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.238118 B = 7451.504665 C = 8083.597644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.128 4.128 11 C 0.519 3.481 12 O -0.542 6.542 13 N -0.724 5.724 14 C 0.163 3.837 15 H 0.087 0.913 16 C -0.129 4.129 17 C -0.117 4.117 18 C -0.123 4.123 19 C -0.113 4.113 20 C -0.115 4.115 21 C -0.082 4.082 22 H 0.116 0.884 23 C 0.469 3.531 24 O -0.486 6.486 25 O -0.521 6.521 26 H 0.260 0.740 27 H 0.022 0.978 28 H 0.023 0.977 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.393 0.607 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.304 -24.993 -0.871 26.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.563 4.563 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.168 4.168 11 C 0.307 3.693 12 O -0.418 6.418 13 N -0.377 5.377 14 C 0.057 3.943 15 H 0.105 0.895 16 C -0.167 4.167 17 C -0.155 4.155 18 C -0.160 4.160 19 C -0.150 4.150 20 C -0.153 4.153 21 C -0.102 4.102 22 H 0.134 0.866 23 C 0.309 3.691 24 O -0.371 6.371 25 O -0.334 6.334 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.228 0.772 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 7.017 -24.693 -1.113 25.695 hybrid contribution 1.222 1.181 0.638 1.815 sum 8.239 -23.513 -0.475 24.919 Atomic orbital electron populations 1.70002 1.06030 1.26444 1.50472 1.25023 0.94812 0.99147 0.95429 0.86602 0.79794 0.83616 0.78002 1.20714 1.21258 1.19925 1.21251 0.92914 0.91115 1.51009 0.92695 1.18879 0.93191 0.89381 0.98492 1.21815 1.00650 0.92157 1.02210 1.21359 0.88479 0.85568 0.73859 1.90637 1.14467 1.87638 1.49033 1.46124 1.09584 1.04867 1.77112 1.21132 0.94519 0.82273 0.96366 0.89530 1.21762 1.02560 0.96707 0.95705 1.21344 0.97522 0.95019 1.01599 1.20558 0.96418 1.00579 0.98457 1.20451 0.99206 0.96798 0.98565 1.21435 0.97278 0.98562 0.98021 1.21272 0.97552 1.00081 0.91291 0.86624 1.23523 0.76984 0.84717 0.83868 1.90864 1.59612 1.17795 1.68825 1.84500 1.58990 1.47105 1.42798 0.93040 0.95917 0.95888 0.90340 0.90687 0.77246 0.91381 0.90582 0.91407 0.91620 0.91857 0.92120 0.91693 0.91797 0.90386 0.90336 0.73179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.23 13.29 55.43 0.74 -27.50 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.52 -15.51 9.11 -34.44 -0.31 -15.82 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.04 1.08 4.26 -27.89 -0.12 0.96 16 10 C -0.13 -2.84 5.64 -27.88 -0.16 -3.00 16 11 C 0.52 10.75 7.74 -10.99 -0.08 10.67 16 12 O -0.54 -13.34 15.65 5.56 0.09 -13.26 16 13 N -0.72 -11.10 3.02 -52.72 -0.16 -11.26 16 14 C 0.16 2.06 1.92 -66.82 -0.13 1.93 16 15 H 0.09 1.32 7.59 -51.93 -0.39 0.93 16 16 C -0.13 -1.45 4.82 -27.44 -0.13 -1.58 16 17 C -0.12 -0.96 5.61 -27.34 -0.15 -1.11 16 18 C -0.12 -0.81 5.26 -29.59 -0.16 -0.97 16 19 C -0.11 -0.67 5.26 -29.60 -0.16 -0.83 16 20 C -0.12 -0.83 5.11 -27.34 -0.14 -0.97 16 21 C -0.08 -0.75 1.89 -92.48 -0.17 -0.93 16 22 H 0.12 0.87 6.63 -51.93 -0.34 0.52 16 23 C 0.47 5.04 7.08 36.00 0.25 5.29 16 24 O -0.49 -7.28 14.51 -18.75 -0.27 -7.56 16 25 O -0.52 -4.10 12.91 -39.26 -0.51 -4.61 16 26 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 27 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.02 0.71 8.10 -51.92 -0.42 0.29 16 29 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 30 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.39 5.29 7.55 -40.82 -0.31 4.98 16 32 H 0.07 0.74 6.62 -51.93 -0.34 0.40 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.50 6.98 -51.93 -0.36 0.14 16 36 H 0.06 0.45 7.47 -51.93 -0.39 0.06 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.35 7.47 -51.93 -0.39 -0.03 16 40 H 0.08 0.60 6.98 -51.93 -0.36 0.24 16 41 H 0.08 0.53 7.32 -51.93 -0.38 0.15 16 42 H 0.41 1.83 9.10 45.56 0.41 2.25 16 LS Contribution 334.17 15.07 5.04 5.04 Total: -1.00 -36.97 334.17 -7.43 -44.40 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.77 Total: 2.21 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -1.56 Total: -4.73 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.58 Total: -38.75 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.69 Total: -25.42 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.97 -7.43 -44.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610621630.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.262 kcal (2) G-P(sol) polarization free energy of solvation -36.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds