Wall clock time and date at job start Tue Mar 31 2020 05:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99443 * 2 1 4 4 H 1.48499 * 109.47154 * 239.99897 * 3 2 1 5 5 H 1.48507 * 109.47006 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47351 * 119.99781 * 3 2 1 7 7 C 1.37868 * 120.00529 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00058 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00187 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47321 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47321 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99621 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99989 * 179.97438 * 11 10 9 14 14 C 1.46922 * 120.63224 * 5.38901 * 13 11 10 15 15 C 1.53199 * 108.77311 * 233.58280 * 14 13 11 16 16 C 1.53042 * 109.31188 * 305.36648 * 15 14 13 17 17 C 1.53030 * 109.53871 * 61.36407 * 16 15 14 18 18 C 1.46924 * 120.62872 * 185.36007 * 13 11 10 19 19 H 1.08999 * 109.59068 * 246.34842 * 18 13 11 20 20 C 1.53009 * 109.58684 * 6.62757 * 18 13 11 21 21 C 1.52996 * 109.47149 * 178.28157 * 20 18 13 22 22 C 1.50695 * 109.47065 * 174.95607 * 21 20 18 23 23 O 1.20827 * 120.00371 * 0.02562 * 22 21 20 24 24 O 1.34231 * 120.00091 * 179.72707 * 22 21 20 25 25 H 0.96992 * 120.00364 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46957 * 59.99672 * 9 7 2 27 27 H 1.08999 * 109.46881 * 300.00421 * 9 7 2 28 28 H 1.09006 * 109.47268 * 59.99892 * 10 9 7 29 29 H 1.08999 * 109.47255 * 299.99908 * 10 9 7 30 30 H 1.08997 * 109.58674 * 353.36882 * 14 13 11 31 31 H 1.08996 * 109.58718 * 113.65366 * 14 13 11 32 32 H 1.09000 * 109.49326 * 65.32016 * 15 14 13 33 33 H 1.09002 * 109.49603 * 185.41192 * 15 14 13 34 34 H 1.09000 * 109.45436 * 181.38735 * 16 15 14 35 35 H 1.09000 * 109.45810 * 301.34111 * 16 15 14 36 36 H 1.08997 * 109.49951 * 178.68476 * 17 16 15 37 37 H 1.09004 * 109.49928 * 58.58696 * 17 16 15 38 38 H 1.09007 * 109.46779 * 58.28916 * 20 18 13 39 39 H 1.08997 * 109.47341 * 298.28731 * 20 18 13 40 40 H 1.08999 * 109.47006 * 54.95969 * 21 20 18 41 41 H 1.09003 * 109.47751 * 294.96378 * 21 20 18 42 42 H 0.96701 * 117.00364 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1028 1.6967 1.2125 7 6 2.0047 -1.1939 0.0005 8 1 3.0846 -1.1938 0.0010 9 6 1.2513 -2.4991 0.0017 10 6 2.2456 -3.6619 0.0027 11 6 1.4922 -4.9671 0.0045 12 8 0.2795 -4.9672 0.0054 13 7 2.1663 -6.1342 0.0052 14 6 3.6307 -6.1530 0.1229 15 6 4.2084 -6.9656 -1.0402 16 6 3.5615 -8.3525 -1.0592 17 6 2.0527 -8.2106 -1.2716 18 6 1.4505 -7.4121 -0.1112 19 1 1.5553 -7.9754 0.8160 20 6 -0.0313 -7.1469 -0.3854 21 6 -0.7661 -8.4789 -0.5486 22 6 -2.2438 -8.2227 -0.6951 23 8 -2.6660 -7.0908 -0.6718 24 8 -3.0905 -9.2515 -0.8574 25 1 -0.4850 0.8399 -0.0004 26 1 0.6243 -2.5575 -0.8880 27 1 0.6250 -2.5563 0.8919 28 1 2.8723 -3.6033 0.8927 29 1 2.8722 -3.6049 -0.8873 30 1 4.0136 -5.1333 0.0819 31 1 3.9153 -6.6124 1.0694 32 1 4.0003 -6.4542 -1.9800 33 1 5.2860 -7.0685 -0.9123 34 1 3.9888 -8.9413 -1.8708 35 1 3.7490 -8.8536 -0.1095 36 1 1.5958 -9.1995 -1.3083 37 1 1.8649 -7.6875 -2.2093 38 1 -0.1325 -6.5618 -1.2995 39 1 -0.4620 -6.5941 0.4495 40 1 -0.5904 -9.1006 0.3293 41 1 -0.3963 -8.9915 -1.4366 42 1 -4.0293 -9.0376 -0.9474 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611291048.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:35 Heat of formation + Delta-G solvation = -138.603780 kcal Electronic energy + Delta-G solvation = -22978.274481 eV Core-core repulsion = 19536.878299 eV Total energy + Delta-G solvation = -3441.396183 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.51142 -39.88937 -37.19475 -36.17112 -34.43793 -33.28537 -32.67804 -30.85574 -29.92650 -26.53953 -25.22257 -24.38194 -22.63886 -21.48459 -20.67273 -20.24426 -18.53906 -17.96475 -16.78974 -16.51994 -16.22492 -15.70429 -15.47002 -15.10007 -14.48347 -14.39251 -14.28797 -13.82540 -13.51190 -13.25927 -13.07268 -12.70045 -12.38317 -12.10020 -12.08411 -11.82797 -11.50183 -11.36235 -11.09544 -11.03884 -10.89156 -10.80193 -10.69469 -10.60876 -10.53658 -10.46827 -9.89486 -9.50553 -9.06991 -8.44212 -8.32695 -8.25219 -5.91529 -3.96246 2.27693 2.96874 3.26432 3.34316 3.36720 3.41623 3.43400 4.49802 4.61378 4.67499 4.75003 4.92486 4.95271 5.07400 5.11991 5.22958 5.34473 5.42200 5.42981 5.49176 5.58542 5.68116 5.69823 5.75185 5.87971 5.93377 5.93498 6.17418 6.24693 6.25521 6.39495 6.49460 6.62031 6.92435 6.99281 7.78512 7.81559 7.92172 7.93715 8.12482 8.43361 8.83363 9.12367 9.67035 11.19266 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015334 B = 0.004437 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.596476 B = 6309.265884 C = 7976.039942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.054 0.946 9 C 0.038 3.962 10 C -0.129 4.129 11 C 0.509 3.491 12 O -0.517 6.517 13 N -0.623 5.623 14 C 0.109 3.891 15 C -0.137 4.137 16 C -0.118 4.118 17 C -0.136 4.136 18 C 0.150 3.850 19 H 0.067 0.933 20 C -0.104 4.104 21 C -0.120 4.120 22 C 0.470 3.530 23 O -0.496 6.496 24 O -0.527 6.527 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.388 -22.254 -1.552 22.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.072 0.928 9 C 0.000 4.000 10 C -0.169 4.169 11 C 0.300 3.700 12 O -0.392 6.392 13 N -0.359 5.359 14 C -0.014 4.014 15 C -0.175 4.175 16 C -0.155 4.155 17 C -0.175 4.175 18 C 0.046 3.954 19 H 0.085 0.915 20 C -0.142 4.142 21 C -0.158 4.158 22 C 0.311 3.689 23 O -0.382 6.382 24 O -0.339 6.339 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.127 0.873 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 4.861 -21.863 -1.500 22.447 hybrid contribution -0.024 0.954 -0.123 0.962 sum 4.837 -20.909 -1.623 21.523 Atomic orbital electron populations 1.69992 1.06034 1.26647 1.50076 1.25017 0.94794 0.99149 0.95349 0.86673 0.79555 0.83310 0.78499 1.20288 1.21299 1.20272 1.21180 0.92820 0.91082 1.51504 0.92754 1.18892 0.93143 0.89319 0.98620 1.21902 1.00717 0.92227 1.02060 1.21576 0.88621 0.85376 0.74471 1.90738 1.13951 1.86512 1.47989 1.48316 1.06792 1.05539 1.75276 1.21684 0.79887 1.02015 0.97808 1.21938 0.99849 0.96151 0.99580 1.21494 0.95285 0.96956 1.01802 1.22102 0.95874 1.00202 0.99285 1.21134 0.91860 0.84930 0.97443 0.91539 1.22130 0.92171 0.92953 1.06920 1.21616 0.87234 1.02115 1.04827 1.23591 0.90251 0.82478 0.72539 1.90836 1.78877 1.23805 1.44636 1.84526 1.23250 1.41078 1.85085 0.92915 0.95838 0.95843 0.90507 0.90450 0.88962 0.91834 0.91303 0.90930 0.91909 0.91921 0.90951 0.91293 0.90121 0.87285 0.88178 0.88208 0.73485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.90 13.29 55.43 0.74 -27.17 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.53 -15.16 9.11 -34.44 -0.31 -15.47 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.04 1.03 4.26 -27.88 -0.12 0.92 16 10 C -0.13 -2.67 3.99 -27.88 -0.11 -2.78 16 11 C 0.51 9.88 7.53 -10.98 -0.08 9.80 16 12 O -0.52 -11.98 11.53 5.56 0.06 -11.91 16 13 N -0.62 -8.99 2.97 -165.22 -0.49 -9.48 16 14 C 0.11 1.21 6.35 -3.71 -0.02 1.19 16 15 C -0.14 -1.24 6.08 -26.61 -0.16 -1.40 16 16 C -0.12 -0.95 5.88 -26.69 -0.16 -1.11 16 17 C -0.14 -1.28 4.82 -26.62 -0.13 -1.41 16 18 C 0.15 1.82 3.03 -67.60 -0.20 1.61 16 19 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 20 C -0.10 -1.52 2.52 -26.73 -0.07 -1.59 16 21 C -0.12 -1.27 5.28 -27.89 -0.15 -1.42 16 22 C 0.47 6.14 8.33 36.00 0.30 6.44 16 23 O -0.50 -8.99 16.68 -18.75 -0.31 -9.30 16 24 O -0.53 -5.14 13.42 -39.26 -0.53 -5.66 16 25 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.08 1.45 7.73 -51.93 -0.40 1.05 16 29 H 0.08 1.47 7.91 -51.93 -0.41 1.06 16 30 H 0.09 1.05 5.93 -51.93 -0.31 0.74 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.53 6.86 -51.93 -0.36 0.17 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 1.43 7.24 -51.92 -0.38 1.05 16 39 H 0.11 2.01 6.04 -51.93 -0.31 1.70 16 40 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.10 0.83 6.84 -51.93 -0.36 0.48 16 42 H 0.41 2.44 9.10 45.56 0.41 2.86 16 LS Contribution 336.44 15.07 5.07 5.07 Total: -1.00 -36.80 336.44 -7.67 -44.47 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -5.87 Total: 0.68 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -1.31 Total: -3.59 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.25 Total: -36.65 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.78 Total: -26.88 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.80 -7.67 -44.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611291048.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.134 kcal (2) G-P(sol) polarization free energy of solvation -36.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds