Wall clock time and date at job start Tue Mar 31 2020 05:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99443 * 2 1 4 4 H 1.48499 * 109.47154 * 239.99897 * 3 2 1 5 5 H 1.48507 * 109.47006 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47351 * 119.99781 * 3 2 1 7 7 C 1.37868 * 120.00529 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00058 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00187 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47321 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47321 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99621 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99989 * 179.97438 * 11 10 9 14 14 C 1.46922 * 120.63224 * 5.38901 * 13 11 10 15 15 C 1.53199 * 108.77311 * 233.58280 * 14 13 11 16 16 C 1.53042 * 109.31188 * 305.36648 * 15 14 13 17 17 C 1.53030 * 109.53871 * 61.36407 * 16 15 14 18 18 C 1.46924 * 120.62872 * 185.36007 * 13 11 10 19 19 H 1.08999 * 109.59068 * 246.34842 * 18 13 11 20 20 C 1.53009 * 109.58684 * 6.62757 * 18 13 11 21 21 C 1.52996 * 109.47149 * 178.28157 * 20 18 13 22 22 C 1.50695 * 109.47065 * 174.95607 * 21 20 18 23 23 O 1.20827 * 120.00371 * 0.02562 * 22 21 20 24 24 O 1.34231 * 120.00091 * 179.72707 * 22 21 20 25 25 H 0.96992 * 120.00364 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46957 * 59.99672 * 9 7 2 27 27 H 1.08999 * 109.46881 * 300.00421 * 9 7 2 28 28 H 1.09006 * 109.47268 * 59.99892 * 10 9 7 29 29 H 1.08999 * 109.47255 * 299.99908 * 10 9 7 30 30 H 1.08997 * 109.58674 * 353.36882 * 14 13 11 31 31 H 1.08996 * 109.58718 * 113.65366 * 14 13 11 32 32 H 1.09000 * 109.49326 * 65.32016 * 15 14 13 33 33 H 1.09002 * 109.49603 * 185.41192 * 15 14 13 34 34 H 1.09000 * 109.45436 * 181.38735 * 16 15 14 35 35 H 1.09000 * 109.45810 * 301.34111 * 16 15 14 36 36 H 1.08997 * 109.49951 * 178.68476 * 17 16 15 37 37 H 1.09004 * 109.49928 * 58.58696 * 17 16 15 38 38 H 1.09007 * 109.46779 * 58.28916 * 20 18 13 39 39 H 1.08997 * 109.47341 * 298.28731 * 20 18 13 40 40 H 1.08999 * 109.47006 * 54.95969 * 21 20 18 41 41 H 1.09003 * 109.47751 * 294.96378 * 21 20 18 42 42 H 0.96701 * 117.00364 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1028 1.6967 1.2125 7 6 2.0047 -1.1939 0.0005 8 1 3.0846 -1.1938 0.0010 9 6 1.2513 -2.4991 0.0017 10 6 2.2456 -3.6619 0.0027 11 6 1.4922 -4.9671 0.0045 12 8 0.2795 -4.9672 0.0054 13 7 2.1663 -6.1342 0.0052 14 6 3.6307 -6.1530 0.1229 15 6 4.2084 -6.9656 -1.0402 16 6 3.5615 -8.3525 -1.0592 17 6 2.0527 -8.2106 -1.2716 18 6 1.4505 -7.4121 -0.1112 19 1 1.5553 -7.9754 0.8160 20 6 -0.0313 -7.1469 -0.3854 21 6 -0.7661 -8.4789 -0.5486 22 6 -2.2438 -8.2227 -0.6951 23 8 -2.6660 -7.0908 -0.6718 24 8 -3.0905 -9.2515 -0.8574 25 1 -0.4850 0.8399 -0.0004 26 1 0.6243 -2.5575 -0.8880 27 1 0.6250 -2.5563 0.8919 28 1 2.8723 -3.6033 0.8927 29 1 2.8722 -3.6049 -0.8873 30 1 4.0136 -5.1333 0.0819 31 1 3.9153 -6.6124 1.0694 32 1 4.0003 -6.4542 -1.9800 33 1 5.2860 -7.0685 -0.9123 34 1 3.9888 -8.9413 -1.8708 35 1 3.7490 -8.8536 -0.1095 36 1 1.5958 -9.1995 -1.3083 37 1 1.8649 -7.6875 -2.2093 38 1 -0.1325 -6.5618 -1.2995 39 1 -0.4620 -6.5941 0.4495 40 1 -0.5904 -9.1006 0.3293 41 1 -0.3963 -8.9915 -1.4366 42 1 -4.0293 -9.0376 -0.9474 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611291048.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:34 Heat of formation + Delta-G solvation = -165.108764 kcal Electronic energy + Delta-G solvation = -22979.423824 eV Core-core repulsion = 19536.878299 eV Total energy + Delta-G solvation = -3442.545525 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.68626 -41.03465 -38.43198 -37.16424 -35.83395 -35.12707 -33.74840 -32.77132 -30.87145 -28.14071 -26.70166 -25.35061 -24.11466 -22.80006 -21.64034 -21.41173 -19.83445 -19.05164 -18.62496 -17.63878 -17.41869 -17.10585 -16.69917 -16.58026 -16.30204 -15.38952 -15.18804 -15.00542 -14.71000 -14.41364 -14.23591 -14.06103 -13.81950 -13.61902 -13.26239 -13.19379 -12.84115 -12.74365 -12.55565 -12.50464 -12.22177 -11.95857 -11.84185 -11.77915 -11.62647 -11.57414 -11.48500 -11.38157 -11.25813 -10.57322 -9.92557 -9.45818 -8.18422 -6.33692 1.24680 1.40249 1.45630 1.53399 1.75309 2.00727 2.25941 2.42933 3.13988 3.65519 3.83073 3.90805 4.01596 4.11679 4.15265 4.26399 4.31810 4.38085 4.46094 4.51304 4.57304 4.63741 4.77393 4.83163 4.89768 5.02685 5.04236 5.15547 5.17964 5.27148 5.32158 5.44314 5.48494 5.55556 5.61439 5.64581 5.82323 5.87430 6.16445 6.49460 6.85285 7.01785 7.36080 7.39712 8.94176 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015334 B = 0.004437 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.596476 B = 6309.265884 C = 7976.039942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.008 4.008 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.288 1.288 6 H -0.260 1.260 7 C -0.544 4.544 8 H 0.076 0.924 9 C 0.046 3.954 10 C -0.117 4.117 11 C 0.503 3.497 12 O -0.570 6.570 13 N -0.612 5.612 14 C 0.098 3.902 15 C -0.134 4.134 16 C -0.114 4.114 17 C -0.131 4.131 18 C 0.146 3.854 19 H 0.094 0.906 20 C -0.096 4.096 21 C -0.111 4.111 22 C 0.473 3.527 23 O -0.561 6.561 24 O -0.511 6.511 25 H 0.262 0.738 26 H -0.024 1.024 27 H -0.021 1.021 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.049 0.951 38 H 0.035 0.965 39 H 0.060 0.940 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.841 -24.782 -1.469 26.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.799 3.201 4 H -0.186 1.186 5 H -0.213 1.213 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.094 0.906 9 C 0.008 3.992 10 C -0.156 4.156 11 C 0.293 3.707 12 O -0.449 6.449 13 N -0.347 5.347 14 C -0.023 4.023 15 C -0.172 4.172 16 C -0.151 4.151 17 C -0.169 4.169 18 C 0.044 3.956 19 H 0.112 0.888 20 C -0.134 4.134 21 C -0.148 4.148 22 C 0.318 3.682 23 O -0.452 6.452 24 O -0.325 6.325 25 H 0.071 0.929 26 H -0.005 1.005 27 H -0.003 1.003 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.070 0.930 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.123 0.877 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.079 0.921 40 H 0.155 0.845 41 H 0.152 0.848 42 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 8.370 -24.480 -1.422 25.910 hybrid contribution -1.159 1.635 -0.149 2.010 sum 7.210 -22.845 -1.571 24.007 Atomic orbital electron populations 1.70196 1.08469 1.27875 1.51416 1.26182 0.95692 1.04092 0.94531 0.85346 0.78028 0.77120 0.79574 1.18590 1.21339 1.18469 1.21684 0.93953 0.91595 1.50959 0.90566 1.18651 0.93603 0.92660 0.94280 1.21636 0.99217 0.90837 1.03942 1.21321 0.87897 0.86640 0.74847 1.90771 1.16015 1.87454 1.50674 1.48293 1.08483 1.04879 1.73012 1.22044 0.77303 1.02726 1.00233 1.21939 1.01390 0.96307 0.97545 1.21514 0.93635 0.96441 1.03553 1.22097 0.97349 1.00794 0.96633 1.21408 0.89969 0.84074 1.00172 0.88786 1.21744 0.94619 0.94261 1.02735 1.21626 0.85009 1.00190 1.07975 1.24126 0.91572 0.81834 0.70687 1.90834 1.80053 1.26463 1.47864 1.84482 1.24457 1.39427 1.84093 0.92890 1.00526 1.00272 0.88265 0.88611 0.89549 0.89255 0.92986 0.88309 0.90074 0.90054 0.87658 0.93239 0.94600 0.92136 0.84486 0.84786 0.71548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.90 13.29 21.44 0.28 -61.61 16 2 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 3 Si 0.98 45.42 29.54 68.60 2.03 47.45 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 5 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 7 C -0.54 -32.10 9.11 25.60 0.23 -31.86 16 8 H 0.08 4.06 7.74 -2.91 -0.02 4.04 16 9 C 0.05 2.68 4.26 29.85 0.13 2.81 16 10 C -0.12 -4.99 3.99 29.85 0.12 -4.87 16 11 C 0.50 20.64 7.53 87.66 0.66 21.30 16 12 O -0.57 -29.12 11.53 -3.02 -0.03 -29.15 16 13 N -0.61 -17.38 2.97 -795.02 -2.36 -19.75 16 14 C 0.10 1.92 6.35 86.37 0.55 2.47 16 15 C -0.13 -1.94 6.08 30.67 0.19 -1.76 16 16 C -0.11 -1.30 5.88 30.62 0.18 -1.12 16 17 C -0.13 -2.01 4.82 30.67 0.15 -1.86 16 18 C 0.15 3.32 3.03 44.98 0.14 3.45 16 19 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 20 C -0.10 -2.91 2.52 30.60 0.08 -2.83 16 21 C -0.11 -2.18 5.28 29.85 0.16 -2.02 16 22 C 0.47 12.47 8.33 71.23 0.59 13.06 16 23 O -0.56 -22.00 16.68 21.96 0.37 -21.64 16 24 O -0.51 -9.25 13.42 -51.42 -0.69 -9.94 16 25 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 26 H -0.02 -1.59 8.10 -2.39 -0.02 -1.61 16 27 H -0.02 -1.41 8.10 -2.39 -0.02 -1.43 16 28 H 0.10 3.74 7.73 -2.38 -0.02 3.73 16 29 H 0.10 3.69 7.91 -2.39 -0.02 3.67 16 30 H 0.09 1.79 5.93 -2.39 -0.01 1.77 16 31 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 33 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.11 0.97 6.86 -2.39 -0.02 0.96 16 37 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.04 1.38 7.24 -2.38 -0.02 1.36 16 39 H 0.06 2.45 6.04 -2.39 -0.01 2.43 16 40 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.13 1.77 6.84 -2.39 -0.02 1.76 16 42 H 0.42 4.72 9.10 -74.06 -0.67 4.04 16 Total: -1.00 -90.26 336.44 3.56 -86.70 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.34 Total: 11.18 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 3.63 Total: -3.23 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -2.08 Total: -81.36 kcal Atomic # 8 Polarization: -60.37 SS G_CDS: -0.36 Total: -60.73 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -90.26 3.56 -86.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611291048.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.414 kcal (2) G-P(sol) polarization free energy of solvation -90.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds