Wall clock time and date at job start Tue Mar 31 2020 05:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46747 * 2 1 4 4 H 1.08995 * 109.47057 * 55.00019 * 3 2 1 5 5 C 1.50697 * 109.46826 * 175.00114 * 3 2 1 6 6 H 1.07995 * 120.00161 * 120.00020 * 5 3 2 7 7 C 1.37880 * 120.00017 * 299.99399 * 5 3 2 8 8 N 1.31523 * 119.99954 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00201 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46900 * 60.00625 * 9 7 5 11 11 H 1.48503 * 109.47298 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47224 * 300.00309 * 9 7 5 13 13 N 1.46503 * 109.46573 * 294.99697 * 3 2 1 14 14 C 1.34770 * 119.99804 * 85.00946 * 13 3 2 15 15 O 1.21275 * 120.00524 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99722 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.47060 * 59.99595 * 16 14 13 18 18 C 1.52999 * 109.47597 * 299.99836 * 16 14 13 19 19 C 1.53006 * 109.46626 * 300.00057 * 18 16 14 20 20 C 1.52997 * 109.47127 * 299.99539 * 19 18 16 21 21 C 1.53002 * 109.46817 * 60.00361 * 20 19 18 22 22 C 1.52996 * 109.46972 * 299.99733 * 21 20 19 23 23 H 1.09000 * 109.47380 * 299.99696 * 22 21 20 24 24 C 1.50712 * 109.47086 * 180.02562 * 22 21 20 25 25 O 1.20818 * 119.99830 * 240.00373 * 24 22 21 26 26 O 1.34227 * 119.99590 * 60.00082 * 24 22 21 27 27 H 1.09003 * 109.47388 * 300.00422 * 1 2 3 28 28 H 1.08995 * 109.47461 * 60.00279 * 1 2 3 29 29 H 1.09005 * 109.47210 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47160 * 240.00061 * 2 1 3 31 31 H 1.09002 * 109.46942 * 119.99323 * 2 1 3 32 32 H 0.96994 * 120.00169 * 179.97438 * 8 7 5 33 33 H 0.96998 * 119.99541 * 264.99381 * 13 3 2 34 34 H 1.08993 * 109.47839 * 180.02562 * 18 16 14 35 35 H 1.09000 * 109.47160 * 59.99688 * 18 16 14 36 36 H 1.09001 * 109.46801 * 59.99811 * 19 18 16 37 37 H 1.09001 * 109.46998 * 179.97438 * 19 18 16 38 38 H 1.09002 * 109.47153 * 180.02562 * 20 19 18 39 39 H 1.08996 * 109.46952 * 300.00302 * 20 19 18 40 40 H 1.08996 * 109.47407 * 60.00219 * 21 20 19 41 41 H 1.09000 * 109.46986 * 179.97438 * 21 20 19 42 42 H 0.96696 * 116.99694 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8786 1.2280 8 7 3.4061 0.3368 2.1730 9 14 6.0048 0.8815 1.3819 10 1 6.4993 2.2817 1.3823 11 1 6.3977 0.2181 2.6511 12 1 6.5975 0.1475 0.2350 13 7 1.6523 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3670 15 8 -0.3396 2.6320 -0.4345 16 6 0.0366 3.3384 -2.6546 17 1 0.0679 2.6142 -3.4687 18 6 1.0070 4.4831 -2.9527 19 6 0.9630 5.4996 -1.8100 20 6 -0.4561 6.0557 -1.6766 21 6 -1.4265 4.9110 -1.3785 22 6 -1.3825 3.8946 -2.5212 23 1 -1.6708 4.3821 -3.4525 24 6 -2.3388 2.7673 -2.2279 25 8 -1.9276 1.6351 -2.1349 26 8 -3.6474 3.0213 -2.0701 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.8292 -0.0615 2.9496 33 1 2.2719 2.1231 -1.9978 34 1 0.7186 4.9709 -3.8837 35 1 2.0180 4.0868 -3.0478 36 1 1.2512 5.0119 -0.8787 37 1 1.6546 6.3149 -2.0221 38 1 -0.4874 6.7802 -0.8628 39 1 -0.7443 6.5432 -2.6078 40 1 -1.1383 4.4235 -0.4472 41 1 -2.4374 5.3073 -1.2830 42 1 -4.2217 2.2662 -1.8830 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054162553.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:09 Heat of formation + Delta-G solvation = -152.997268 kcal Electronic energy + Delta-G solvation = -24425.615653 eV Core-core repulsion = 20983.595322 eV Total energy + Delta-G solvation = -3442.020331 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.85339 -39.00815 -36.98480 -35.79377 -34.79455 -32.48721 -31.34264 -31.13882 -30.10995 -26.88867 -24.60836 -23.25374 -22.68738 -21.13677 -20.90765 -19.41711 -18.91950 -17.69112 -16.86948 -16.49242 -15.90879 -15.21120 -15.16733 -14.89085 -14.36195 -14.10696 -13.73644 -13.47604 -13.22980 -12.67992 -12.43190 -12.33809 -12.20886 -11.98176 -11.65615 -11.41652 -11.16379 -11.13176 -11.03505 -10.94070 -10.76742 -10.65549 -10.45161 -10.21209 -10.13270 -9.97022 -9.91578 -9.43251 -8.96635 -8.66816 -8.41957 -7.65783 -6.06726 -4.16093 2.58369 3.25228 3.27607 3.33019 3.33921 3.59331 4.13841 4.41149 4.56041 4.86819 4.96147 5.16396 5.23781 5.24496 5.39075 5.44657 5.53433 5.58736 5.63750 5.82974 5.96836 6.01821 6.16365 6.24067 6.31471 6.40600 6.56120 6.62969 6.65830 6.78673 6.89028 7.25341 7.37479 7.53009 7.62705 7.70591 7.84431 7.99167 8.22466 8.29542 8.79007 8.85812 9.28456 9.51956 10.98282 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021809 B = 0.005704 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.585666 B = 4908.039895 C = 5722.803374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 C 0.274 3.726 4 H 0.047 0.953 5 C -0.533 4.533 6 H 0.059 0.941 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.708 5.708 14 C 0.521 3.479 15 O -0.543 6.543 16 C -0.102 4.102 17 H 0.095 0.905 18 C -0.107 4.107 19 C -0.127 4.127 20 C -0.113 4.113 21 C -0.126 4.126 22 C -0.051 4.051 23 H 0.103 0.897 24 C 0.484 3.516 25 O -0.493 6.493 26 O -0.524 6.524 27 H 0.042 0.958 28 H 0.062 0.938 29 H 0.015 0.985 30 H 0.027 0.973 31 H 0.095 0.905 32 H 0.264 0.736 33 H 0.385 0.615 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.105 0.895 41 H 0.067 0.933 42 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.423 9.203 -11.063 16.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C 0.173 3.827 4 H 0.065 0.935 5 C -0.571 4.571 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.355 5.355 14 C 0.306 3.694 15 O -0.422 6.422 16 C -0.124 4.124 17 H 0.114 0.886 18 C -0.145 4.145 19 C -0.165 4.165 20 C -0.151 4.151 21 C -0.164 4.164 22 C -0.070 4.070 23 H 0.121 0.879 24 C 0.325 3.675 25 O -0.379 6.379 26 O -0.336 6.336 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.034 0.966 30 H 0.046 0.954 31 H 0.113 0.887 32 H 0.074 0.926 33 H 0.217 0.783 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.123 0.877 41 H 0.086 0.914 42 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -8.554 9.072 -10.229 16.128 hybrid contribution 0.919 -0.707 -0.176 1.172 sum -7.636 8.365 -10.405 15.380 Atomic orbital electron populations 1.21916 0.97921 0.97887 1.02250 1.21911 0.92985 0.99788 1.01815 1.18704 0.93825 0.89171 0.81047 0.93531 1.21215 0.90912 1.38892 1.06107 0.92277 1.24885 0.98413 0.94908 0.95478 1.69901 1.35098 1.37618 1.09356 0.86550 0.85130 0.78234 0.77404 1.20245 1.21196 1.20224 1.46404 1.14651 1.56166 1.18326 1.19834 0.82472 0.78734 0.88366 1.90556 1.51048 1.59774 1.40800 1.21332 0.93843 0.98247 0.98989 0.88638 1.21504 0.98898 0.95170 0.98887 1.21613 0.96805 0.98503 0.99542 1.21501 0.94892 0.97323 1.01355 1.21827 0.99933 0.94992 0.99602 1.20708 0.91278 0.93475 1.01556 0.87943 1.23234 0.81165 0.90354 0.72698 1.90719 1.77658 1.24215 1.45279 1.84486 1.20437 1.44794 1.83898 0.93837 0.91939 0.96601 0.95377 0.88731 0.92614 0.78302 0.91216 0.90679 0.90890 0.91714 0.91658 0.92299 0.87725 0.91419 0.73783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 8.51 37.16 0.32 -3.14 16 2 C -0.13 -3.22 5.45 -26.73 -0.15 -3.37 16 3 C 0.27 6.97 2.24 -69.08 -0.15 6.82 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.53 -14.13 8.73 -34.44 -0.30 -14.43 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.79 5.29 -17.81 -0.09 1.70 16 8 N -0.88 -25.11 11.29 55.43 0.63 -24.48 16 9 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 N -0.71 -14.68 4.91 -54.93 -0.27 -14.95 16 14 C 0.52 10.02 3.29 -10.99 -0.04 9.99 16 15 O -0.54 -12.05 9.09 -15.87 -0.14 -12.20 16 16 C -0.10 -1.46 2.19 -91.77 -0.20 -1.66 16 17 H 0.10 1.30 8.10 -51.93 -0.42 0.88 16 18 C -0.11 -1.24 5.36 -26.73 -0.14 -1.38 16 19 C -0.13 -1.58 5.70 -26.73 -0.15 -1.73 16 20 C -0.11 -1.27 5.92 -26.73 -0.16 -1.43 16 21 C -0.13 -1.68 4.87 -26.73 -0.13 -1.81 16 22 C -0.05 -0.67 2.38 -91.77 -0.22 -0.88 16 23 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 24 C 0.48 7.39 6.65 36.01 0.24 7.63 16 25 O -0.49 -9.33 13.38 -25.90 -0.35 -9.68 16 26 O -0.52 -6.42 13.33 -39.25 -0.52 -6.95 16 27 H 0.04 1.11 7.85 -51.93 -0.41 0.70 16 28 H 0.06 1.50 4.02 -51.93 -0.21 1.29 16 29 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 2.65 5.95 -51.93 -0.31 2.34 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.39 7.06 7.96 -40.82 -0.32 6.74 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.86 7.56 -51.93 -0.39 0.47 16 36 H 0.07 1.16 7.22 -51.93 -0.37 0.78 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.10 1.79 5.51 -51.93 -0.29 1.51 16 41 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 42 H 0.40 3.47 9.10 45.56 0.41 3.88 16 LS Contribution 321.45 15.07 4.84 4.84 Total: -1.00 -32.18 321.45 -7.64 -39.82 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -5.62 Total: 11.55 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -1.18 Total: -3.70 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.36 Total: -39.43 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -1.01 Total: -28.82 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.18 -7.64 -39.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054162553.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.179 kcal (2) G-P(sol) polarization free energy of solvation -32.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds