Wall clock time and date at job start Tue Mar 31 2020 06:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46495 * 109.47211 * 2 1 4 4 C 1.46500 * 119.99985 * 270.00038 * 3 2 1 5 5 C 1.50704 * 109.46997 * 269.99815 * 4 3 2 6 6 H 1.08005 * 119.99895 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99885 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99657 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00290 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46928 * 89.99710 * 9 7 5 11 11 H 1.48492 * 109.47355 * 209.99801 * 9 7 5 12 12 H 1.48504 * 109.47080 * 329.99958 * 9 7 5 13 13 C 1.34775 * 120.00295 * 89.99523 * 3 2 1 14 14 O 1.21279 * 120.00107 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99775 * 0.02562 * 13 3 2 16 16 O 1.45198 * 109.47256 * 179.97438 * 15 13 3 17 17 C 1.34230 * 117.00173 * 179.97438 * 16 15 13 18 18 O 1.20818 * 119.99983 * 0.27497 * 17 16 15 19 19 C 1.50706 * 119.99763 * 179.97438 * 17 16 15 20 20 C 1.54261 * 110.03173 * 297.90675 * 19 17 16 21 21 C 1.54975 * 104.15832 * 217.13899 * 20 19 17 22 22 C 1.54887 * 102.77628 * 37.88686 * 21 20 19 23 23 C 1.53877 * 110.02859 * 180.68852 * 19 17 16 24 24 H 1.08997 * 109.46969 * 59.99824 * 1 2 3 25 25 H 1.08997 * 109.47053 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46960 * 300.00154 * 1 2 3 27 27 H 1.08994 * 109.47124 * 239.99363 * 2 1 3 28 28 H 1.09009 * 109.46708 * 119.99879 * 2 1 3 29 29 H 1.09003 * 109.46933 * 29.99584 * 4 3 2 30 30 H 1.08997 * 109.47402 * 150.00137 * 4 3 2 31 31 H 0.97000 * 119.99946 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.47158 * 59.99972 * 15 13 3 33 33 H 1.08998 * 109.46923 * 299.99608 * 15 13 3 34 34 H 1.09002 * 110.01319 * 59.29959 * 19 17 16 35 35 H 1.08996 * 110.48844 * 335.78041 * 20 19 17 36 36 H 1.09001 * 110.48660 * 98.42925 * 20 19 17 37 37 H 1.09005 * 110.71735 * 279.57737 * 21 20 19 38 38 H 1.08998 * 110.92349 * 156.29807 * 21 20 19 39 39 H 1.09000 * 110.48699 * 203.40648 * 22 21 20 40 40 H 1.09006 * 110.59455 * 80.81712 * 22 21 20 41 41 H 1.08998 * 110.03190 * 238.57206 * 23 19 17 42 42 H 1.08998 * 110.03276 * 0.02562 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3427 1.2301 -1.0961 7 6 4.1492 2.3895 -2.8779 8 7 5.3912 2.1824 -3.2578 9 14 3.0130 3.4350 -3.9292 10 1 3.1165 4.8553 -3.5081 11 1 3.4059 3.3118 -5.3559 12 1 1.6132 2.9691 -3.7593 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1599 1.1671 15 6 1.9922 1.3060 2.4723 16 8 2.3071 2.1954 3.5759 17 6 2.1360 1.7118 4.8163 18 8 1.7411 0.5810 4.9746 19 6 2.4430 2.5771 6.0114 20 6 3.9374 2.9596 6.0169 21 6 4.3292 2.9362 7.5161 22 6 3.5303 1.7259 8.0601 23 6 2.1840 1.7933 7.3100 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8901 29 1 1.5818 1.6876 -2.0284 30 1 2.0957 3.1410 -1.1384 31 1 5.7173 2.5729 -4.0837 32 1 2.6228 0.4188 2.5299 33 1 0.9444 1.0116 2.5302 34 1 1.8274 3.4763 5.9889 35 1 4.5208 2.2272 5.4590 36 1 4.0773 3.9573 5.6007 37 1 4.0192 3.8572 8.0101 38 1 5.4008 2.7772 7.6360 39 1 3.3739 1.8238 9.1343 40 1 4.0467 0.7929 7.8341 41 1 1.4433 2.3126 7.9181 42 1 1.8367 0.7870 7.0758 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060784649.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:59 Heat of formation + Delta-G solvation = -132.294971 kcal Electronic energy + Delta-G solvation = -22628.813388 eV Core-core repulsion = 19187.690776 eV Total energy + Delta-G solvation = -3441.122612 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.81204 -39.19785 -37.76675 -36.27625 -35.41738 -32.77696 -30.53790 -30.16701 -29.01155 -28.86174 -26.92284 -23.11131 -23.03682 -22.00182 -20.98121 -19.77924 -18.65142 -18.00090 -17.03501 -16.75171 -16.61253 -16.18800 -15.68672 -15.38866 -14.71630 -14.37021 -14.06947 -13.61733 -13.57097 -13.33722 -13.00665 -12.59890 -12.45070 -12.24001 -11.94249 -11.85666 -11.63718 -11.48171 -11.42395 -11.32345 -11.04097 -11.00302 -10.90498 -10.81118 -10.58704 -10.53827 -10.37361 -10.18760 -9.57645 -9.11957 -8.61289 -7.83590 -6.10992 -4.10395 2.14105 2.44236 3.15779 3.27737 3.33560 3.35556 3.75281 4.19502 4.32068 4.37411 4.55863 4.78080 4.89440 5.09798 5.11307 5.15541 5.17625 5.22164 5.23375 5.30314 5.31359 5.39851 5.48461 5.64554 5.66284 5.68910 5.81783 5.91916 5.92582 6.05458 6.06989 6.08846 6.33675 6.37995 6.64679 6.88369 7.23529 7.56761 7.69347 8.10037 8.42845 8.80809 8.92514 9.48520 11.02311 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.023688 B = 0.003715 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.727817 B = 7534.223913 C = 8243.501611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.588 5.588 4 C 0.218 3.782 5 C -0.531 4.531 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.509 3.491 14 O -0.518 6.518 15 C 0.049 3.951 16 O -0.326 6.326 17 C 0.466 3.534 18 O -0.512 6.512 19 C -0.085 4.085 20 C -0.114 4.114 21 C -0.125 4.125 22 C -0.125 4.125 23 C -0.122 4.122 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.033 0.967 30 H 0.038 0.962 31 H 0.265 0.735 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.371 -2.547 18.863 20.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.321 5.321 4 C 0.098 3.902 5 C -0.570 4.570 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.294 3.706 14 O -0.393 6.393 15 C -0.028 4.028 16 O -0.241 6.241 17 C 0.309 3.691 18 O -0.401 6.401 19 C -0.104 4.104 20 C -0.151 4.151 21 C -0.162 4.162 22 C -0.162 4.162 23 C -0.160 4.160 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.108 0.892 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.129 0.871 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.138 -2.227 18.694 20.510 hybrid contribution -0.543 0.259 -0.823 1.020 sum -8.681 -1.968 17.871 19.965 Atomic orbital electron populations 1.22246 0.96496 1.01882 1.02308 1.21540 0.93648 0.83580 1.03488 1.47872 1.64247 1.13540 1.06480 1.19699 0.97517 0.93432 0.79539 1.21321 0.95283 1.33137 1.07251 0.90693 1.24852 0.95025 0.95763 0.97320 1.69896 1.15125 1.44861 1.23556 0.86846 0.81416 0.81635 0.79773 1.19842 1.21029 1.19050 1.19731 0.79406 0.87121 0.84322 1.90714 1.44228 1.17599 1.86749 1.22923 1.02691 0.92746 0.84424 1.86579 1.78379 1.44802 1.14352 1.23782 0.73598 0.87030 0.84681 1.90615 1.42925 1.20069 1.86470 1.21720 1.00122 0.98582 0.89994 1.22363 0.92273 1.03083 0.97414 1.22541 1.00272 0.98516 0.94897 1.22378 0.95500 0.98764 0.99593 1.22264 0.98294 1.02038 0.93390 0.91966 0.91673 0.93056 0.89170 0.91398 0.94891 0.94420 0.92507 0.88556 0.88742 0.87098 0.90835 0.89831 0.91063 0.91002 0.91305 0.91376 0.90833 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 37.16 0.38 -1.75 16 2 C 0.10 1.55 5.93 -4.04 -0.02 1.53 16 3 N -0.59 -12.00 2.46 -175.06 -0.43 -12.43 16 4 C 0.22 5.28 4.23 -5.19 -0.02 5.26 16 5 C -0.53 -15.19 9.94 -34.44 -0.34 -15.53 16 6 H 0.07 2.35 8.06 -52.48 -0.42 1.92 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 9 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 13 C 0.51 10.61 7.75 -10.98 -0.09 10.52 16 14 O -0.52 -13.06 16.08 -14.10 -0.23 -13.28 16 15 C 0.05 0.80 4.50 36.01 0.16 0.97 16 16 O -0.33 -5.43 9.73 -45.90 -0.45 -5.87 16 17 C 0.47 6.57 7.10 36.01 0.26 6.83 16 18 O -0.51 -7.94 14.96 -18.74 -0.28 -8.22 16 19 C -0.08 -0.89 3.41 -90.65 -0.31 -1.20 16 20 C -0.11 -1.14 6.34 -25.03 -0.16 -1.30 16 21 C -0.12 -0.97 6.91 -24.69 -0.17 -1.14 16 22 C -0.12 -0.98 6.83 -25.07 -0.17 -1.15 16 23 C -0.12 -1.10 6.40 -25.61 -0.16 -1.26 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.61 7.22 -51.93 -0.38 0.24 16 27 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 28 H 0.07 0.89 6.44 -51.92 -0.33 0.56 16 29 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 30 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 31 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.10 1.44 7.39 -51.93 -0.38 1.06 16 33 H 0.09 1.31 7.18 -51.93 -0.37 0.94 16 34 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.83 7.85 -51.93 -0.41 0.42 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.96 6.40 -51.93 -0.33 0.63 16 LS Contribution 344.62 15.07 5.19 5.19 Total: -1.00 -34.64 344.62 -7.58 -42.21 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.75 Total: -1.37 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -0.75 Total: 3.79 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.34 Total: -39.19 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.95 Total: -27.38 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.64 -7.58 -42.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060784649.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.083 kcal (2) G-P(sol) polarization free energy of solvation -34.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds