Wall clock time and date at job start Tue Mar 31 2020 06:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46495 * 109.47211 * 2 1 4 4 C 1.46500 * 119.99985 * 270.00038 * 3 2 1 5 5 C 1.50704 * 109.46997 * 269.99815 * 4 3 2 6 6 H 1.08005 * 119.99895 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99885 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99657 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00290 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46928 * 89.99710 * 9 7 5 11 11 H 1.48492 * 109.47355 * 209.99801 * 9 7 5 12 12 H 1.48504 * 109.47080 * 329.99958 * 9 7 5 13 13 C 1.34775 * 120.00295 * 89.99523 * 3 2 1 14 14 O 1.21279 * 120.00107 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99775 * 0.02562 * 13 3 2 16 16 O 1.45198 * 109.47256 * 179.97438 * 15 13 3 17 17 C 1.34230 * 117.00173 * 179.97438 * 16 15 13 18 18 O 1.20818 * 119.99983 * 0.27497 * 17 16 15 19 19 C 1.50706 * 119.99763 * 179.97438 * 17 16 15 20 20 C 1.54261 * 110.03173 * 297.90675 * 19 17 16 21 21 C 1.54975 * 104.15832 * 217.13899 * 20 19 17 22 22 C 1.54887 * 102.77628 * 37.88686 * 21 20 19 23 23 C 1.53877 * 110.02859 * 180.68852 * 19 17 16 24 24 H 1.08997 * 109.46969 * 59.99824 * 1 2 3 25 25 H 1.08997 * 109.47053 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46960 * 300.00154 * 1 2 3 27 27 H 1.08994 * 109.47124 * 239.99363 * 2 1 3 28 28 H 1.09009 * 109.46708 * 119.99879 * 2 1 3 29 29 H 1.09003 * 109.46933 * 29.99584 * 4 3 2 30 30 H 1.08997 * 109.47402 * 150.00137 * 4 3 2 31 31 H 0.97000 * 119.99946 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.47158 * 59.99972 * 15 13 3 33 33 H 1.08998 * 109.46923 * 299.99608 * 15 13 3 34 34 H 1.09002 * 110.01319 * 59.29959 * 19 17 16 35 35 H 1.08996 * 110.48844 * 335.78041 * 20 19 17 36 36 H 1.09001 * 110.48660 * 98.42925 * 20 19 17 37 37 H 1.09005 * 110.71735 * 279.57737 * 21 20 19 38 38 H 1.08998 * 110.92349 * 156.29807 * 21 20 19 39 39 H 1.09000 * 110.48699 * 203.40648 * 22 21 20 40 40 H 1.09006 * 110.59455 * 80.81712 * 22 21 20 41 41 H 1.08998 * 110.03190 * 238.57206 * 23 19 17 42 42 H 1.08998 * 110.03276 * 0.02562 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3427 1.2301 -1.0961 7 6 4.1492 2.3895 -2.8779 8 7 5.3912 2.1824 -3.2578 9 14 3.0130 3.4350 -3.9292 10 1 3.1165 4.8553 -3.5081 11 1 3.4059 3.3118 -5.3559 12 1 1.6132 2.9691 -3.7593 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1599 1.1671 15 6 1.9922 1.3060 2.4723 16 8 2.3071 2.1954 3.5759 17 6 2.1360 1.7118 4.8163 18 8 1.7411 0.5810 4.9746 19 6 2.4430 2.5771 6.0114 20 6 3.9374 2.9596 6.0169 21 6 4.3292 2.9362 7.5161 22 6 3.5303 1.7259 8.0601 23 6 2.1840 1.7933 7.3100 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8901 29 1 1.5818 1.6876 -2.0284 30 1 2.0957 3.1410 -1.1384 31 1 5.7173 2.5729 -4.0837 32 1 2.6228 0.4188 2.5299 33 1 0.9444 1.0116 2.5302 34 1 1.8274 3.4763 5.9889 35 1 4.5208 2.2272 5.4590 36 1 4.0773 3.9573 5.6007 37 1 4.0192 3.8572 8.0101 38 1 5.4008 2.7772 7.6360 39 1 3.3739 1.8238 9.1343 40 1 4.0467 0.7929 7.8341 41 1 1.4433 2.3126 7.9181 42 1 1.8367 0.7870 7.0758 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060784649.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:59 Heat of formation + Delta-G solvation = -153.257108 kcal Electronic energy + Delta-G solvation = -22629.722374 eV Core-core repulsion = 19187.690776 eV Total energy + Delta-G solvation = -3442.031599 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.97705 -40.74083 -38.68029 -37.47388 -37.02557 -34.89854 -32.11706 -31.22022 -30.24270 -29.62647 -28.58291 -24.65924 -24.32025 -23.41805 -21.67152 -20.74496 -20.18568 -19.14539 -19.09532 -18.10003 -17.87760 -17.57665 -16.94736 -16.57857 -16.23777 -15.76011 -15.38798 -14.82228 -14.76030 -14.49404 -14.29333 -14.22082 -13.87794 -13.73888 -13.42899 -13.18727 -12.79614 -12.59272 -12.44370 -12.40939 -12.17981 -12.14572 -12.03581 -11.97479 -11.81430 -11.75774 -11.75126 -11.50887 -11.35068 -10.84768 -10.81448 -9.55641 -8.35281 -6.41250 1.03537 1.22840 1.33573 1.37179 1.45418 1.54554 2.30111 2.32379 2.98868 3.34949 3.41111 3.56992 3.67734 3.86801 3.92261 4.10698 4.15845 4.33881 4.41454 4.46861 4.48926 4.55793 4.57962 4.74089 4.75820 4.84013 4.93075 4.95716 4.96923 5.06238 5.15954 5.18683 5.28942 5.33583 5.36245 5.43115 5.45232 5.54283 6.19723 6.46547 6.59696 6.60245 7.12963 7.26578 8.81670 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.023688 B = 0.003715 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.727817 B = 7534.223913 C = 8243.501611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.092 3.908 3 N -0.592 5.592 4 C 0.227 3.773 5 C -0.540 4.540 6 H 0.029 0.971 7 C 0.012 3.988 8 N -0.944 5.944 9 Si 0.948 3.052 10 H -0.276 1.276 11 H -0.275 1.275 12 H -0.236 1.236 13 C 0.501 3.499 14 O -0.573 6.573 15 C 0.059 3.941 16 O -0.348 6.348 17 C 0.465 3.535 18 O -0.527 6.527 19 C -0.085 4.085 20 C -0.118 4.118 21 C -0.118 4.118 22 C -0.123 4.123 23 C -0.119 4.119 24 H 0.053 0.947 25 H 0.096 0.904 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.021 0.979 31 H 0.269 0.731 32 H 0.110 0.890 33 H 0.125 0.875 34 H 0.130 0.870 35 H 0.052 0.948 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.058 0.942 41 H 0.096 0.904 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.734 -2.660 20.080 22.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.030 4.030 3 N -0.325 5.325 4 C 0.105 3.895 5 C -0.579 4.579 6 H 0.047 0.953 7 C -0.187 4.187 8 N -0.584 5.584 9 Si 0.771 3.229 10 H -0.201 1.201 11 H -0.200 1.200 12 H -0.159 1.159 13 C 0.289 3.711 14 O -0.453 6.453 15 C -0.017 4.017 16 O -0.263 6.263 17 C 0.309 3.691 18 O -0.417 6.417 19 C -0.104 4.104 20 C -0.156 4.156 21 C -0.155 4.155 22 C -0.161 4.161 23 C -0.156 4.156 24 H 0.072 0.928 25 H 0.115 0.885 26 H 0.077 0.923 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.127 0.873 33 H 0.142 0.858 34 H 0.148 0.852 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.076 0.924 41 H 0.114 0.886 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.531 -2.403 19.933 22.672 hybrid contribution 0.278 0.215 -1.141 1.194 sum -10.253 -2.188 18.792 21.519 Atomic orbital electron populations 1.22179 0.93597 1.03954 1.02283 1.21892 0.95958 0.80762 1.04350 1.47973 1.63856 1.15320 1.05304 1.19381 0.95081 0.93164 0.81888 1.21553 0.97051 1.32407 1.06883 0.95308 1.25859 0.96760 0.97124 0.98910 1.70049 1.17454 1.46435 1.24492 0.85708 0.80504 0.78983 0.77736 1.20144 1.19971 1.15871 1.20521 0.78097 0.86682 0.85844 1.90674 1.46759 1.20125 1.87721 1.22807 1.04660 0.92015 0.82242 1.86593 1.78917 1.45501 1.15302 1.24514 0.72788 0.87331 0.84442 1.90601 1.43744 1.20847 1.86479 1.21958 1.00594 0.98914 0.88907 1.22399 0.91847 1.02303 0.99075 1.22538 1.00665 0.99342 0.92977 1.22390 0.94666 0.98304 1.00703 1.22285 0.99508 1.00981 0.92857 0.92761 0.88504 0.92322 0.89949 0.89046 0.92584 0.96063 0.92195 0.87259 0.85752 0.85248 0.92881 0.89979 0.89312 0.90508 0.89204 0.92358 0.88556 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 10.24 71.98 0.74 -2.81 16 2 C 0.09 2.68 5.93 86.38 0.51 3.19 16 3 N -0.59 -24.06 2.46 -826.14 -2.03 -26.09 16 4 C 0.23 10.98 4.23 85.63 0.36 11.34 16 5 C -0.54 -31.86 9.94 25.60 0.25 -31.61 16 6 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 7 C 0.01 0.69 5.47 84.65 0.46 1.15 16 8 N -0.94 -59.81 13.96 21.45 0.30 -59.51 16 9 Si 0.95 44.17 27.47 68.60 1.88 46.05 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 12 H -0.24 -9.75 6.54 99.48 0.65 -9.10 16 13 C 0.50 21.06 7.75 87.66 0.68 21.74 16 14 O -0.57 -29.87 16.08 15.77 0.25 -29.61 16 15 C 0.06 1.88 4.50 71.24 0.32 2.20 16 16 O -0.35 -11.49 9.73 -45.06 -0.44 -11.93 16 17 C 0.46 12.76 7.10 71.24 0.51 13.27 16 18 O -0.53 -15.80 14.96 21.99 0.33 -15.47 16 19 C -0.08 -1.67 3.41 -10.81 -0.04 -1.71 16 20 C -0.12 -2.30 6.34 31.70 0.20 -2.10 16 21 C -0.12 -1.60 6.91 31.91 0.22 -1.38 16 22 C -0.12 -1.67 6.83 31.67 0.22 -1.45 16 23 C -0.12 -1.90 6.40 31.32 0.20 -1.70 16 24 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.06 1.21 7.22 -2.38 -0.02 1.19 16 27 H 0.08 2.53 8.07 -2.39 -0.02 2.51 16 28 H 0.09 2.22 6.44 -2.38 -0.02 2.20 16 29 H 0.06 2.46 7.13 -2.39 -0.02 2.44 16 30 H 0.02 1.11 6.85 -2.39 -0.02 1.09 16 31 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 32 H 0.11 3.16 7.39 -2.39 -0.02 3.14 16 33 H 0.12 3.17 7.18 -2.39 -0.02 3.15 16 34 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.05 1.23 7.85 -2.39 -0.02 1.21 16 36 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.07 1.45 6.40 -2.39 -0.02 1.44 16 Total: -1.00 -78.82 344.62 5.88 -72.94 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.94 Total: 13.47 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 4.64 Total: 10.14 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -1.73 Total: -85.60 kcal Atomic # 8 Polarization: -57.15 SS G_CDS: 0.14 Total: -57.01 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.05 kcal Total: -78.82 5.88 -72.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060784649.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.315 kcal (2) G-P(sol) polarization free energy of solvation -78.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds