Wall clock time and date at job start Tue Mar 31 2020 06:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.46878 * 2 1 4 4 N 1.46499 * 109.47080 * 239.99265 * 2 1 3 5 5 C 1.34775 * 119.99299 * 85.00358 * 4 2 1 6 6 O 1.21276 * 120.00699 * 359.97438 * 5 4 2 7 7 C 1.50709 * 119.99599 * 179.97438 * 5 4 2 8 8 C 1.55238 * 110.58096 * 294.87565 * 7 5 4 9 9 C 1.54894 * 102.58338 * 203.33573 * 8 7 5 10 10 C 1.54266 * 104.31305 * 37.93170 * 9 8 7 11 11 C 1.53869 * 106.60031 * 336.32486 * 10 9 8 12 12 C 1.50705 * 109.46744 * 119.99575 * 2 1 3 13 13 O 1.20830 * 119.99631 * 120.00422 * 12 2 1 14 14 O 1.34226 * 120.00247 * 299.99863 * 12 2 1 15 15 C 1.45192 * 117.00193 * 180.02562 * 14 12 2 16 16 C 1.53003 * 109.47342 * 179.97438 * 15 14 12 17 17 C 1.50699 * 109.47312 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99860 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99918 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00339 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99814 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46883 * 60.00219 * 21 19 17 23 23 H 1.48505 * 109.47005 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47319 * 300.00150 * 21 19 17 25 25 H 1.09006 * 109.47290 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47261 * 300.00416 * 1 2 3 27 27 H 1.08993 * 109.47204 * 60.00734 * 1 2 3 28 28 H 0.96998 * 120.00025 * 264.99975 * 4 2 1 29 29 H 1.09006 * 110.43428 * 57.45967 * 7 5 4 30 30 H 1.08996 * 110.89448 * 85.05138 * 8 7 5 31 31 H 1.08993 * 110.76342 * 321.56803 * 8 7 5 32 32 H 1.09002 * 110.48891 * 279.18596 * 9 8 7 33 33 H 1.08998 * 110.48494 * 156.67683 * 9 8 7 34 34 H 1.09001 * 110.03084 * 95.60669 * 10 9 8 35 35 H 1.08996 * 110.03108 * 216.98559 * 10 9 8 36 36 H 1.08999 * 110.04012 * 119.28327 * 11 10 9 37 37 H 1.09006 * 110.02998 * 240.67078 * 11 10 9 38 38 H 1.08997 * 109.47642 * 300.00402 * 15 14 12 39 39 H 1.09007 * 109.47289 * 60.00069 * 15 14 12 40 40 H 1.08994 * 109.47311 * 300.00082 * 16 15 14 41 41 H 1.08997 * 109.46884 * 60.00452 * 16 15 14 42 42 H 0.96997 * 120.00331 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6908 -1.1961 5 6 2.1470 -0.0184 -2.3570 6 8 1.8582 1.1582 -2.4117 7 6 2.6499 -0.7288 -3.5874 8 6 4.1205 -1.1856 -3.3910 9 6 4.6330 -1.3088 -4.8475 10 6 3.9719 -0.1265 -5.5856 11 6 2.7111 0.2423 -4.7844 12 6 2.0323 -0.7104 1.2306 13 8 2.7270 -1.6928 1.1198 14 8 1.7080 -0.2517 2.4497 15 6 2.2275 -0.9855 3.5897 16 6 1.7564 -0.3182 4.8835 17 6 2.2951 -1.0802 6.0668 18 1 2.9122 -1.9529 5.9116 19 6 2.0002 -0.6632 7.3475 20 7 1.2484 0.3992 7.5364 21 14 2.6686 -1.6073 8.8142 22 1 4.1529 -1.6057 8.7693 23 1 2.2112 -0.9597 10.0699 24 1 2.1735 -3.0067 8.7696 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 2.2490 -1.6319 -1.1524 29 1 2.0135 -1.5825 -3.8208 30 1 4.1637 -2.1493 -2.8835 31 1 4.6889 -0.4337 -2.8437 32 1 4.3169 -2.2561 -5.2843 33 1 5.7188 -1.2189 -4.8787 34 1 4.6551 0.7223 -5.6183 35 1 3.6983 -0.4243 -6.5978 36 1 2.7822 1.2700 -4.4282 37 1 1.8247 0.1239 -5.4078 38 1 1.8642 -2.0126 3.5571 39 1 3.3171 -0.9844 3.5567 40 1 2.1202 0.7087 4.9160 41 1 0.6670 -0.3190 4.9168 42 1 1.0413 0.6927 8.4374 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061496794.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:24 Heat of formation + Delta-G solvation = -154.761431 kcal Electronic energy + Delta-G solvation = -21976.442975 eV Core-core repulsion = 18534.346144 eV Total energy + Delta-G solvation = -3442.096831 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.73740 -39.83011 -37.52678 -36.41336 -35.11125 -33.40585 -31.54291 -30.23544 -29.13553 -28.88386 -25.61465 -24.47468 -22.46186 -21.12008 -20.80342 -20.37772 -19.99234 -18.12464 -17.09366 -16.68613 -16.28378 -16.08191 -15.87935 -15.50390 -14.98584 -14.57836 -14.31843 -13.98526 -13.68315 -13.50525 -13.04795 -12.59503 -12.40886 -12.31838 -12.26215 -11.74716 -11.59698 -11.48029 -11.42703 -11.29833 -11.10967 -11.10880 -10.79803 -10.74710 -10.73175 -10.31947 -9.98607 -9.73915 -9.69808 -9.40763 -9.32147 -8.47665 -6.13575 -4.18557 2.32676 2.39736 2.59258 3.27673 3.28404 3.32246 3.36619 4.14346 4.22407 4.35181 4.41674 4.76367 4.88537 4.96661 5.01284 5.05469 5.13855 5.17395 5.22888 5.22991 5.33102 5.51863 5.57650 5.61737 5.65567 5.77159 5.83993 5.97158 5.98304 6.00672 6.03306 6.05789 6.18864 6.55858 6.82747 7.26903 7.49634 7.57094 7.80353 7.96588 8.05288 8.19215 8.86599 9.46040 10.97793 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.038294 B = 0.002640 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.002273 B =10602.202553 C =11073.904926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.149 3.851 3 H 0.125 0.875 4 N -0.715 5.715 5 C 0.525 3.475 6 O -0.537 6.537 7 C -0.113 4.113 8 C -0.115 4.115 9 C -0.123 4.123 10 C -0.125 4.125 11 C -0.112 4.112 12 C 0.455 3.545 13 O -0.516 6.516 14 O -0.349 6.349 15 C 0.075 3.925 16 C 0.025 3.975 17 C -0.529 4.529 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.889 5.889 21 Si 0.900 3.100 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.410 0.590 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.029 0.971 41 H 0.029 0.971 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.085 -2.827 -24.570 24.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.043 3.957 3 H 0.142 0.858 4 N -0.370 5.370 5 C 0.312 3.688 6 O -0.414 6.414 7 C -0.134 4.134 8 C -0.153 4.153 9 C -0.161 4.161 10 C -0.163 4.163 11 C -0.150 4.150 12 C 0.297 3.703 13 O -0.405 6.405 14 O -0.264 6.264 15 C 0.003 3.997 16 C -0.012 4.012 17 C -0.567 4.567 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.527 5.527 21 Si 0.728 3.272 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.093 0.907 28 H 0.247 0.753 29 H 0.120 0.880 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.998 -2.148 -24.421 24.597 hybrid contribution 0.520 -1.110 1.031 1.601 sum 2.518 -3.258 -23.390 23.750 Atomic orbital electron populations 1.22102 0.91779 1.03278 1.04386 1.20362 0.96346 0.97872 0.81101 0.85784 1.45870 1.67657 1.14917 1.08520 1.20580 0.76810 0.87181 0.84229 1.90696 1.49813 1.15982 1.84898 1.22234 0.98434 0.99618 0.93102 1.22573 0.93208 1.01865 0.97685 1.22352 1.00362 0.98652 0.94742 1.22152 0.96873 0.98313 0.98934 1.22080 0.98039 1.00320 0.94573 1.23438 0.77727 0.82938 0.86208 1.90619 1.36079 1.26248 1.87597 1.86521 1.69029 1.56141 1.14677 1.23725 0.98196 0.95294 0.82500 1.19175 0.97932 0.96880 0.87251 1.20921 1.32668 1.12782 0.90297 0.92317 1.24981 0.94947 0.95097 0.99084 1.69957 1.36697 1.23917 1.22160 0.86524 0.79389 0.79961 0.81369 1.20060 1.21088 1.20054 0.91860 0.89521 0.90721 0.75333 0.88011 0.90530 0.90788 0.91340 0.91315 0.91635 0.91707 0.89671 0.91436 0.92135 0.92174 0.95262 0.95257 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.42 37.16 0.35 -1.47 16 2 C 0.15 1.97 3.09 -69.08 -0.21 1.75 16 3 H 0.12 1.68 7.58 -51.93 -0.39 1.29 16 4 N -0.72 -8.17 4.94 -54.93 -0.27 -8.44 16 5 C 0.53 6.04 7.10 -10.98 -0.08 5.96 16 6 O -0.54 -7.90 15.09 5.56 0.08 -7.82 16 7 C -0.11 -0.94 3.25 -89.92 -0.29 -1.23 16 8 C -0.12 -0.88 6.34 -24.55 -0.16 -1.03 16 9 C -0.12 -0.78 6.82 -25.07 -0.17 -0.95 16 10 C -0.13 -0.84 6.80 -25.62 -0.17 -1.01 16 11 C -0.11 -0.93 6.18 -25.62 -0.16 -1.09 16 12 C 0.45 7.53 7.32 36.01 0.26 7.79 16 13 O -0.52 -9.34 15.59 -18.75 -0.29 -9.63 16 14 O -0.35 -6.69 10.12 -39.25 -0.40 -7.09 16 15 C 0.08 1.63 5.40 37.16 0.20 1.83 16 16 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 17 C -0.53 -14.67 9.11 -34.44 -0.31 -14.99 16 18 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 21 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.09 1.02 8.11 -51.93 -0.42 0.60 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.41 4.26 7.79 -40.82 -0.32 3.94 16 29 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.66 8.06 -51.93 -0.42 0.24 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.88 6.85 -51.93 -0.36 0.53 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 39 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 351.81 15.07 5.30 5.30 Total: -1.00 -31.39 351.81 -7.79 -39.19 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -6.94 Total: 0.04 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -0.99 Total: -2.32 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 0.46 Total: -33.84 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.61 Total: -24.54 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.39 -7.79 -39.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061496794.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.574 kcal (2) G-P(sol) polarization free energy of solvation -31.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds