Wall clock time and date at job start Tue Mar 31 2020 06:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47531 * 2 1 4 4 O 1.42898 * 109.47441 * 120.00353 * 2 1 3 5 5 C 1.42900 * 114.00084 * 270.00241 * 4 2 1 6 6 C 1.52999 * 109.47407 * 179.97438 * 5 4 2 7 7 H 1.09002 * 109.82151 * 305.70001 * 6 5 4 8 8 C 1.54377 * 109.83427 * 184.81226 * 6 5 4 9 9 C 1.55455 * 102.18527 * 219.18087 * 8 6 5 10 10 C 1.54950 * 100.99078 * 34.03647 * 9 8 6 11 11 O 1.43242 * 109.83277 * 66.58133 * 6 5 4 12 12 C 1.50698 * 109.47009 * 240.00119 * 2 1 3 13 13 O 1.21292 * 120.00598 * 249.82085 * 12 2 1 14 14 N 1.34778 * 119.99925 * 69.81859 * 12 2 1 15 15 C 1.37102 * 120.00167 * 185.14539 * 14 12 2 16 16 H 1.08002 * 119.99670 * 325.00753 * 15 14 12 17 17 C 1.38950 * 119.99880 * 145.00804 * 15 14 12 18 18 N 1.31402 * 120.00330 * 4.03198 * 17 15 14 19 19 Si 1.86808 * 119.99804 * 184.03038 * 17 15 14 20 20 H 1.48504 * 109.46751 * 359.97438 * 19 17 15 21 21 H 1.48491 * 109.47044 * 120.00055 * 19 17 15 22 22 H 1.48503 * 109.46964 * 240.00421 * 19 17 15 23 23 C 1.46499 * 120.00131 * 5.14281 * 14 12 2 24 24 C 1.53001 * 117.49868 * 133.42834 * 23 14 12 25 25 C 1.53008 * 117.49705 * 64.76970 * 23 14 12 26 26 H 1.09001 * 109.46895 * 294.90486 * 1 2 3 27 27 H 1.08993 * 109.47348 * 174.90327 * 1 2 3 28 28 H 1.08997 * 109.47435 * 54.89959 * 1 2 3 29 29 H 1.09001 * 109.46345 * 299.99445 * 5 4 2 30 30 H 1.08995 * 109.47319 * 59.99140 * 5 4 2 31 31 H 1.09006 * 110.84561 * 337.31378 * 8 6 5 32 32 H 1.08996 * 110.84983 * 100.93826 * 8 6 5 33 33 H 1.09001 * 111.05830 * 276.11940 * 9 8 6 34 34 H 1.09006 * 111.18215 * 152.00760 * 9 8 6 35 35 H 1.08995 * 110.30580 * 204.69135 * 10 9 8 36 36 H 1.09005 * 110.39132 * 82.56381 * 10 9 8 37 37 H 0.96998 * 120.00415 * 185.00325 * 18 17 15 38 38 H 1.08993 * 115.55466 * 279.10387 * 23 14 12 39 39 H 1.08999 * 117.50041 * 359.97438 * 24 23 14 40 40 H 1.09004 * 117.50218 * 145.02356 * 24 23 14 41 41 H 1.08997 * 117.50149 * 214.97950 * 25 23 14 42 42 H 1.09002 * 117.49530 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2001 0.1828 2.2941 6 6 2.7080 -0.6409 3.4791 7 1 2.0297 -1.4728 3.6688 8 6 2.8052 0.2522 4.7345 9 6 4.1189 -0.2522 5.3951 10 6 4.9613 -0.6072 4.1440 11 8 4.0211 -1.1393 3.1974 12 6 2.0323 -0.7104 -1.2305 13 8 2.5761 -1.7897 -1.1282 14 7 1.8772 -0.1463 -2.4447 15 6 2.2378 -0.8373 -3.5726 16 1 3.0924 -1.4973 -3.5515 17 6 1.5037 -0.6884 -4.7430 18 7 0.5130 0.1734 -4.7920 19 14 1.9253 -1.7134 -6.2467 20 1 3.0739 -2.6014 -5.9343 21 1 0.7510 -2.5381 -6.6287 22 1 2.2867 -0.8151 -7.3727 23 6 1.3234 1.2050 -2.5593 24 6 2.0446 2.1881 -3.4837 25 6 2.1386 2.3554 -1.9650 26 1 -0.3633 0.4328 0.9321 27 1 -0.3634 -1.0235 -0.0913 28 1 -0.3634 0.5909 -0.8407 29 1 2.9320 0.9511 2.0449 30 1 1.2539 0.6546 2.5588 31 1 2.8894 1.3031 4.4574 32 1 1.9516 0.0906 5.3927 33 1 3.9353 -1.1345 6.0084 34 1 4.5946 0.5364 5.9783 35 1 5.7121 -1.3568 4.3938 36 1 5.4388 0.2863 3.7416 37 1 -0.0453 0.2262 -5.5835 38 1 0.2373 1.2747 -2.4997 39 1 2.9314 1.8294 -4.0062 40 1 1.4329 2.9046 -4.0320 41 1 1.5888 3.1819 -1.5148 42 1 3.0868 2.1066 -1.4884 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068230636.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:47 Heat of formation + Delta-G solvation = -89.998624 kcal Electronic energy + Delta-G solvation = -23358.075632 eV Core-core repulsion = 19918.787127 eV Total energy + Delta-G solvation = -3439.288505 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.60933 -38.96778 -37.03965 -35.78613 -32.96539 -32.26561 -31.62911 -30.83179 -29.66285 -25.56511 -25.21856 -23.17956 -21.87844 -21.41736 -21.19892 -21.09893 -18.93634 -17.07922 -16.82287 -16.32079 -16.12501 -15.57305 -15.08647 -14.88834 -14.60667 -14.17460 -13.84407 -13.58867 -13.53294 -13.02648 -12.83925 -12.37894 -11.96497 -11.87720 -11.71129 -11.65334 -11.41495 -11.28460 -11.09105 -11.05031 -10.91220 -10.73424 -10.62804 -10.47755 -10.24042 -9.64749 -9.44799 -9.39715 -9.19178 -8.74623 -8.11941 -7.52998 -6.24230 -3.89445 3.21487 3.30915 3.37698 3.65984 3.92778 3.94795 4.26517 4.31982 4.65862 4.74707 4.76705 4.98139 5.06894 5.10900 5.22349 5.30347 5.45940 5.47909 5.51633 5.56004 5.59893 5.68134 5.69871 5.79460 5.81359 5.83888 5.97620 6.09101 6.17129 6.19942 6.25415 6.34272 6.65758 6.80653 6.97059 7.09435 7.20454 7.62126 7.63392 8.28684 8.60542 9.27100 9.45486 10.06344 10.82247 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.027543 B = 0.004154 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.358086 B = 6738.249833 C = 7105.599645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.075 3.925 3 H 0.074 0.926 4 O -0.349 6.349 5 C 0.050 3.950 6 C 0.084 3.916 7 H 0.088 0.912 8 C -0.148 4.148 9 C -0.155 4.155 10 C 0.045 3.955 11 O -0.361 6.361 12 C 0.470 3.530 13 O -0.558 6.558 14 N -0.427 5.427 15 C -0.306 4.306 16 H 0.092 0.908 17 C 0.043 3.957 18 N -0.875 5.875 19 Si 0.918 3.082 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.283 1.283 23 C 0.131 3.869 24 C -0.130 4.130 25 C -0.236 4.236 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.265 0.735 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.081 6.848 15.494 16.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.013 3.987 3 H 0.092 0.908 4 O -0.267 6.267 5 C -0.028 4.028 6 C 0.026 3.974 7 H 0.106 0.894 8 C -0.186 4.186 9 C -0.193 4.193 10 C -0.032 4.032 11 O -0.280 6.280 12 C 0.257 3.743 13 O -0.439 6.439 14 N -0.148 5.148 15 C -0.434 4.434 16 H 0.110 0.890 17 C -0.160 4.160 18 N -0.513 5.513 19 Si 0.745 3.255 20 H -0.193 1.193 21 H -0.207 1.207 22 H -0.209 1.209 23 C 0.025 3.975 24 C -0.168 4.168 25 C -0.274 4.274 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.123 0.877 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.351 6.054 15.196 16.413 hybrid contribution -0.131 0.198 -0.732 0.769 sum 1.220 6.252 14.464 15.805 Atomic orbital electron populations 1.22160 0.94717 1.03363 1.01912 1.22006 0.94429 0.96106 0.86125 0.90801 1.88098 1.86520 1.33320 1.18740 1.22935 0.98857 0.93253 0.87717 1.22747 0.86025 0.96365 0.92240 0.89432 1.23143 0.98799 1.00366 0.96304 1.23293 0.95753 1.01939 0.98324 1.23406 0.92834 0.98937 0.88016 1.88650 1.16415 1.69569 1.53330 1.19888 0.84068 0.86429 0.83911 1.90553 1.45294 1.22348 1.85704 1.42937 1.56422 1.11143 1.04343 1.19496 1.12845 1.23927 0.87124 0.89038 1.25348 0.95337 0.96194 0.99166 1.69869 1.18278 1.33263 1.29914 0.85995 0.78697 0.79827 0.81014 1.19277 1.20693 1.20904 1.21185 0.94707 0.79630 1.01939 1.22625 1.02566 1.01321 0.90256 1.23622 1.02769 1.02359 0.98647 0.92753 0.91711 0.90561 0.93311 0.92762 0.90256 0.89679 0.90309 0.89976 0.89821 0.92387 0.92464 0.87722 0.89192 0.89720 0.89607 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.36 37.16 0.35 -2.56 16 2 C 0.07 1.53 2.41 -27.89 -0.07 1.46 16 3 H 0.07 1.37 5.59 -51.93 -0.29 1.08 16 4 O -0.35 -7.24 9.53 -58.65 -0.56 -7.80 16 5 C 0.05 0.75 5.28 37.16 0.20 0.95 16 6 C 0.08 1.14 3.81 -26.01 -0.10 1.04 16 7 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 8 C -0.15 -1.34 6.56 -24.71 -0.16 -1.50 16 9 C -0.16 -1.29 7.16 -24.40 -0.17 -1.47 16 10 C 0.04 0.50 7.78 38.19 0.30 0.80 16 11 O -0.36 -5.87 11.00 -37.67 -0.41 -6.29 16 12 C 0.47 12.29 6.88 -10.99 -0.08 12.21 16 13 O -0.56 -17.01 16.35 -14.17 -0.23 -17.24 16 14 N -0.43 -11.09 2.91 -107.73 -0.31 -11.40 16 15 C -0.31 -8.66 8.59 -14.93 -0.13 -8.79 16 16 H 0.09 2.75 7.59 -52.49 -0.40 2.35 16 17 C 0.04 1.15 5.17 -17.47 -0.09 1.06 16 18 N -0.88 -22.85 10.58 55.50 0.59 -22.26 16 19 Si 0.92 21.14 29.56 -169.99 -5.02 16.11 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 C 0.13 2.88 2.65 -67.93 -0.18 2.70 16 24 C -0.13 -2.68 8.74 -26.69 -0.23 -2.92 16 25 C -0.24 -4.29 8.56 -26.69 -0.23 -4.52 16 26 H 0.05 0.77 7.78 -51.93 -0.40 0.37 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.08 1.34 5.85 -51.93 -0.30 1.04 16 29 H 0.05 0.72 8.08 -51.93 -0.42 0.30 16 30 H 0.05 0.67 7.78 -51.93 -0.40 0.26 16 31 H 0.08 0.65 7.85 -51.93 -0.41 0.24 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.27 6.61 8.32 -40.82 -0.34 6.27 16 38 H 0.11 2.33 6.67 -51.93 -0.35 1.98 16 39 H 0.09 2.02 7.96 -51.93 -0.41 1.61 16 40 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 41 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.08 1.54 7.94 -51.93 -0.41 1.13 16 LS Contribution 338.88 15.07 5.11 5.11 Total: -1.00 -33.60 338.88 -8.19 -41.79 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -6.74 Total: 3.51 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -0.60 Total: -1.52 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: 0.27 Total: -33.66 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -1.20 Total: -31.33 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.60 -8.19 -41.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068230636.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.214 kcal (2) G-P(sol) polarization free energy of solvation -33.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds