Wall clock time and date at job start Tue Mar 31 2020 06:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47450 * 2 1 4 4 O 1.42903 * 109.47210 * 239.99867 * 2 1 3 5 5 C 1.42900 * 114.00052 * 89.99992 * 4 2 1 6 6 C 1.53003 * 109.47020 * 179.97438 * 5 4 2 7 7 H 1.09004 * 110.35368 * 55.68748 * 6 5 4 8 8 C 1.54938 * 110.30770 * 177.83566 * 6 5 4 9 9 C 1.55303 * 100.94133 * 155.36124 * 8 6 5 10 10 C 1.54379 * 102.25503 * 325.86591 * 9 8 6 11 11 O 1.43240 * 107.58638 * 21.35694 * 10 9 8 12 12 C 1.50701 * 109.46705 * 120.00073 * 2 1 3 13 13 O 1.21290 * 120.00299 * 120.00570 * 12 2 1 14 14 N 1.34780 * 120.00064 * 299.99184 * 12 2 1 15 15 C 1.37092 * 120.00037 * 180.02562 * 14 12 2 16 16 H 1.08003 * 119.99795 * 131.67265 * 15 14 12 17 17 C 1.38952 * 120.00216 * 311.66947 * 15 14 12 18 18 N 1.31410 * 119.99756 * 167.39102 * 17 15 14 19 19 Si 1.86796 * 120.00140 * 347.39440 * 17 15 14 20 20 H 1.48510 * 109.47270 * 94.69429 * 19 17 15 21 21 H 1.48494 * 109.47337 * 214.69503 * 19 17 15 22 22 H 1.48499 * 109.47092 * 334.69838 * 19 17 15 23 23 C 1.46498 * 119.99808 * 0.02562 * 14 12 2 24 24 C 1.53001 * 117.49930 * 187.87359 * 23 14 12 25 25 C 1.52992 * 117.50493 * 119.24996 * 23 14 12 26 26 H 1.09004 * 109.46992 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46968 * 300.00355 * 1 2 3 28 28 H 1.09004 * 109.46716 * 60.00268 * 1 2 3 29 29 H 1.08994 * 109.46972 * 60.00439 * 5 4 2 30 30 H 1.08994 * 109.46929 * 299.99907 * 5 4 2 31 31 H 1.08996 * 111.12682 * 37.44117 * 8 6 5 32 32 H 1.09006 * 111.16219 * 273.29532 * 8 6 5 33 33 H 1.09009 * 110.84689 * 207.67233 * 9 8 6 34 34 H 1.09002 * 110.84702 * 84.05705 * 9 8 6 35 35 H 1.09006 * 109.83012 * 261.84619 * 10 9 8 36 36 H 1.08998 * 109.90776 * 140.91324 * 10 9 8 37 37 H 0.97008 * 119.99707 * 180.02562 * 18 17 15 38 38 H 1.09003 * 115.54533 * 333.57408 * 23 14 12 39 39 H 1.09007 * 117.49304 * 359.97438 * 24 23 14 40 40 H 1.09001 * 117.50064 * 145.01018 * 24 23 14 41 41 H 1.09003 * 117.50481 * 214.97683 * 25 23 14 42 42 H 1.08999 * 117.49503 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.2002 0.1829 -2.2941 6 6 2.7092 -0.6407 -3.4788 7 1 2.0245 -1.4617 -3.6919 8 6 2.8744 0.2601 -4.7285 9 6 3.9423 -0.5363 -5.5269 10 6 4.8123 -1.1366 -4.4017 11 8 4.0251 -1.1475 -3.2050 12 6 2.0323 -0.7104 1.2305 13 8 2.7297 -1.6966 1.1193 14 7 1.7068 -0.2499 2.4546 15 6 2.1641 -0.8959 3.5740 16 1 2.6214 -0.3322 4.3738 17 6 2.0392 -2.2757 3.6796 18 7 2.6880 -2.9240 4.6208 19 14 0.9494 -3.2092 2.4838 20 1 1.7729 -3.7191 1.3580 21 1 0.3090 -4.3507 3.1852 22 1 -0.1000 -2.3000 1.9572 23 6 0.8642 0.9410 2.5890 24 6 0.6812 1.5222 3.9924 25 6 -0.4734 0.7820 3.3143 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 2.9321 0.9512 -2.0451 30 1 1.2539 0.6545 -2.5589 31 1 3.2446 1.2480 -4.4546 32 1 1.9409 0.3340 -5.2866 33 1 4.5304 0.1293 -6.1588 34 1 3.4763 -1.3239 -6.1191 35 1 5.7011 -0.5230 -4.2542 36 1 5.1045 -2.1541 -4.6614 37 1 2.6011 -3.8874 4.6943 38 1 0.9044 1.6418 1.7550 39 1 1.1873 1.0181 4.8158 40 1 0.6010 2.6056 4.0820 41 1 -1.3133 1.3784 2.9578 42 1 -0.7268 -0.2088 3.6912 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068230638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:49 Heat of formation + Delta-G solvation = -77.999832 kcal Electronic energy + Delta-G solvation = -23559.564713 eV Core-core repulsion = 20120.796515 eV Total energy + Delta-G solvation = -3438.768198 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.69967 -39.27502 -37.27942 -36.16402 -32.86304 -32.32562 -31.98825 -31.07868 -29.87055 -25.60875 -25.21340 -23.18647 -21.92949 -21.78803 -21.30759 -21.08797 -19.37908 -17.17985 -16.89705 -16.60840 -16.26097 -15.81267 -15.15469 -15.01215 -14.66571 -14.36170 -13.90006 -13.44006 -13.35769 -13.20842 -13.02278 -12.58869 -12.18605 -12.14262 -11.99162 -11.87578 -11.57081 -11.37780 -11.25072 -11.12574 -10.97570 -10.79837 -10.60791 -10.14577 -10.04116 -9.95784 -9.61563 -9.47067 -9.41077 -8.56585 -8.28708 -7.37850 -6.13951 -3.99604 3.31482 3.51061 3.57250 3.72987 3.79054 3.82844 4.27882 4.45490 4.51198 4.66840 4.67898 4.82411 5.04061 5.06842 5.14362 5.19616 5.32379 5.37581 5.40792 5.42350 5.45405 5.46561 5.53572 5.60673 5.63606 5.70617 5.74501 5.80997 5.95334 6.00100 6.04843 6.17814 6.28575 6.49619 6.69901 6.89662 7.06063 7.44550 7.89101 8.09962 8.80547 8.97119 9.45213 9.85310 10.90884 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021337 B = 0.005111 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.949872 B = 5477.198637 C = 6166.489576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.073 3.927 3 H 0.074 0.926 4 O -0.347 6.347 5 C 0.061 3.939 6 C 0.084 3.916 7 H 0.078 0.922 8 C -0.149 4.149 9 C -0.154 4.154 10 C 0.046 3.954 11 O -0.362 6.362 12 C 0.463 3.537 13 O -0.516 6.516 14 N -0.440 5.440 15 C -0.341 4.341 16 H 0.096 0.904 17 C 0.091 3.909 18 N -0.871 5.871 19 Si 0.904 3.096 20 H -0.255 1.255 21 H -0.308 1.308 22 H -0.274 1.274 23 C 0.062 3.938 24 C -0.174 4.174 25 C -0.198 4.198 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.272 0.728 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.422 10.515 -16.948 20.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.012 3.988 3 H 0.092 0.908 4 O -0.265 6.265 5 C -0.016 4.016 6 C 0.027 3.973 7 H 0.096 0.904 8 C -0.187 4.187 9 C -0.192 4.192 10 C -0.031 4.031 11 O -0.281 6.281 12 C 0.252 3.748 13 O -0.395 6.395 14 N -0.164 5.164 15 C -0.467 4.467 16 H 0.113 0.887 17 C -0.118 4.118 18 N -0.506 5.506 19 Si 0.734 3.266 20 H -0.181 1.181 21 H -0.237 1.237 22 H -0.199 1.199 23 C -0.044 4.044 24 C -0.211 4.211 25 C -0.237 4.237 26 H 0.084 0.916 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.857 9.546 -16.721 19.637 hybrid contribution -0.707 -0.116 -0.738 1.029 sum -4.565 9.431 -17.459 20.361 Atomic orbital electron populations 1.22526 0.94788 1.03757 1.02858 1.21972 0.94271 0.96021 0.86546 0.90799 1.88127 1.86520 1.33205 1.18608 1.22682 0.98922 0.93063 0.86979 1.22970 0.86154 0.95508 0.92688 0.90412 1.23253 1.00039 0.99569 0.95853 1.23113 0.97603 1.00074 0.98406 1.23143 0.94637 1.00710 0.84602 1.88652 1.23073 1.85431 1.30954 1.20158 0.83245 0.87448 0.83975 1.90574 1.38061 1.25753 1.85118 1.43042 1.43631 1.25024 1.04652 1.18704 1.40352 0.90660 0.96939 0.88681 1.25356 0.94464 0.96958 0.95011 1.69699 1.38634 1.08992 1.33286 0.86432 0.79672 0.78859 0.81657 1.18083 1.23713 1.19902 1.21884 0.94572 0.92161 0.95775 1.23159 1.02332 0.98377 0.97264 1.23284 0.91868 1.02517 1.06063 0.91585 0.89565 0.92485 0.92743 0.92339 0.90076 0.89654 0.89997 0.90475 0.91428 0.91487 0.91819 0.87262 0.87087 0.89555 0.89586 0.88379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.99 9.15 37.16 0.34 -2.65 16 2 C 0.07 1.43 2.35 -27.88 -0.07 1.37 16 3 H 0.07 1.22 7.21 -51.93 -0.37 0.84 16 4 O -0.35 -7.06 9.51 -58.41 -0.56 -7.61 16 5 C 0.06 0.88 5.46 37.16 0.20 1.09 16 6 C 0.08 1.14 3.73 -25.71 -0.10 1.05 16 7 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 8 C -0.15 -1.34 6.57 -24.49 -0.16 -1.50 16 9 C -0.15 -1.29 7.02 -24.79 -0.17 -1.47 16 10 C 0.05 0.53 7.79 37.88 0.30 0.83 16 11 O -0.36 -6.02 11.03 -36.86 -0.41 -6.43 16 12 C 0.46 11.75 5.27 -10.98 -0.06 11.69 16 13 O -0.52 -15.67 12.43 -14.36 -0.18 -15.85 16 14 N -0.44 -10.80 2.43 -107.73 -0.26 -11.06 16 15 C -0.34 -9.73 8.45 -14.93 -0.13 -9.86 16 16 H 0.10 2.83 7.18 -52.48 -0.38 2.45 16 17 C 0.09 2.74 5.02 -17.47 -0.09 2.66 16 18 N -0.87 -27.26 13.96 55.50 0.77 -26.49 16 19 Si 0.90 25.21 24.67 -169.99 -4.19 21.01 16 20 H -0.26 -7.72 6.50 56.52 0.37 -7.35 16 21 H -0.31 -8.35 7.11 56.52 0.40 -7.95 16 22 H -0.27 -7.17 6.89 56.52 0.39 -6.78 16 23 C 0.06 1.15 4.31 -67.93 -0.29 0.86 16 24 C -0.17 -2.96 9.83 -26.73 -0.26 -3.23 16 25 C -0.20 -3.37 9.41 -26.74 -0.25 -3.62 16 26 H 0.07 1.23 7.95 -51.93 -0.41 0.82 16 27 H 0.09 1.34 4.38 -51.93 -0.23 1.11 16 28 H 0.06 0.73 7.87 -51.93 -0.41 0.32 16 29 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 30 H 0.06 0.66 7.87 -51.93 -0.41 0.25 16 31 H 0.08 0.67 8.06 -51.93 -0.42 0.25 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.27 8.06 8.31 -40.82 -0.34 7.72 16 38 H 0.11 1.68 6.22 -51.93 -0.32 1.36 16 39 H 0.11 2.19 6.60 -51.92 -0.34 1.85 16 40 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.10 1.93 8.14 -51.93 -0.42 1.50 16 LS Contribution 331.90 15.07 5.00 5.00 Total: -1.00 -37.06 331.90 -7.26 -44.32 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -6.70 Total: -0.12 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -0.74 Total: -2.78 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.51 Total: -37.55 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -1.14 Total: -29.89 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -4.19 Total: 21.01 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -37.06 -7.26 -44.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068230638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.679 kcal (2) G-P(sol) polarization free energy of solvation -37.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds